RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 TARBP1Q13395 1621 aaKnown RBP10.18□□□□□ -0.78
LRRC28-220ENST00000561253 BIVM-ERCC5R4GMW8 1640 aa10.18□□□□□ -0.78
LRRC28-220ENST00000561253 IFT140Q96RY7 1462 aa10.18□□□□□ -0.78
LRRC28-220ENST00000561253 IL21Q9HBE4 155 aa10.18□□□□□ -0.78
LRRC28-220ENST00000561253 ZPR1O75312 459 aa10.17□□□□□ -0.78
LRRC28-220ENST00000561253 PROSER2Q86WR7 435 aaPredicted RBP10.17□□□□□ -0.78
LRRC28-220ENST00000561253 RNF166Q96A37 237 aaPredicted RBP10.17□□□□□ -0.78
LRRC28-220ENST00000561253 GDPD2Q9HCC8 539 aa10.17□□□□□ -0.78
LRRC28-220ENST00000561253 HMX1Q9NP08 348 aaPredicted RBP10.17□□□□□ -0.78
LRRC28-220ENST00000561253 RAD54L2Q9Y4B4 1467 aa10.17□□□□□ -0.78
LRRC28-220ENST00000561253 PER1O15534 1290 aaPredicted RBP10.16□□□□□ -0.78
LRRC28-220ENST00000561253 JUNDP17535 347 aa10.16□□□□□ -0.78
LRRC28-220ENST00000561253 NDUFB9Q9Y6M9 179 aa10.16□□□□□ -0.78
LRRC28-220ENST00000561253 ZNF608Q9ULD9 1512 aaPredicted RBP10.16□□□□□ -0.78
LRRC28-220ENST00000561253 TLL1O43897 1013 aa10.15□□□□□ -0.78
LRRC28-220ENST00000561253 TRAK2O60296 914 aa10.15□□□□□ -0.78
LRRC28-220ENST00000561253 MSS51Q4VC12 460 aa10.15□□□□□ -0.78
LRRC28-220ENST00000561253 TJAP1Q5JTD0 557 aa10.15□□□□□ -0.78
LRRC28-220ENST00000561253 LYPD8Q6UX82 237 aa10.15□□□□□ -0.78
LRRC28-220ENST00000561253 SPNS2Q8IVW8 549 aa10.15□□□□□ -0.78
LRRC28-220ENST00000561253 WWC1Q8IX03 1113 aa10.15□□□□□ -0.78
LRRC28-220ENST00000561253 GJD4Q96KN9 370 aaPredicted RBP10.15□□□□□ -0.78
LRRC28-220ENST00000561253 HCSTQ9UBK5 93 aa10.15□□□□□ -0.78
LRRC28-220ENST00000561253 TBC1D2BQ9UPU7 963 aa10.15□□□□□ -0.78
LRRC28-220ENST00000561253 SOGA1O94964 1423 aa10.15□□□□□ -0.79
LRRC28-220ENST00000561253 ADH1BP00325 375 aa10.14□□□□□ -0.79
LRRC28-220ENST00000561253 ABL2P42684 1182 aa10.14□□□□□ -0.79
LRRC28-220ENST00000561253 ABCA10Q8WWZ4 1543 aa10.13□□□□□ -0.79
LRRC28-220ENST00000561253 FAM160A2Q8N612 972 aaPredicted RBP10.13□□□□□ -0.79
LRRC28-220ENST00000561253 PTPRNQ16849 979 aa10.12□□□□□ -0.79
LRRC28-220ENST00000561253 ZNF516Q92618 1163 aa10.12□□□□□ -0.79
LRRC28-220ENST00000561253 TRIM34Q9BYJ4 488 aa10.12□□□□□ -0.79
LRRC28-220ENST00000561253 NR6A1Q15406 480 aa10.11□□□□□ -0.79
LRRC28-220ENST00000561253 PRDM9Q9NQV7 894 aa10.11□□□□□ -0.79
LRRC28-220ENST00000561253 WDR97A6NE52 1622 aa10.11□□□□□ -0.79
LRRC28-220ENST00000561253 DXOO77932 396 aaKnown RBP10.1□□□□□ -0.79
LRRC28-220ENST00000561253 FNBP4Q8N3X1 1017 aaPredicted RBP10.1□□□□□ -0.79
LRRC28-220ENST00000561253 PNMA1Q8ND90 353 aa10.1□□□□□ -0.79
LRRC28-220ENST00000561253 EPS8L1Q8TE68 723 aa10.1□□□□□ -0.79
LRRC28-220ENST00000561253 ZNF330Q9Y3S2 320 aaPredicted RBP10.1□□□□□ -0.79
LRRC28-220ENST00000561253 CTHP32929 405 aa10.09□□□□□ -0.79
LRRC28-220ENST00000561253 MMP16P51512 607 aa10.09□□□□□ -0.79
LRRC28-220ENST00000561253 SLC6A16Q9GZN6 736 aa10.09□□□□□ -0.79
LRRC28-220ENST00000561253 TDRD9Q8NDG6 1382 aaKnown RBP10.09□□□□□ -0.79
LRRC28-220ENST00000561253 AQRO60306 1485 aaKnown RBP eCLIP10.09□□□□□ -0.79
LRRC28-220ENST00000561253 ARID3CA6NKF2 412 aa10.08□□□□□ -0.8
LRRC28-220ENST00000561253 CCNYL3P0C7X3 344 aa10.08□□□□□ -0.8
LRRC28-220ENST00000561253 NUDT12Q9BQG2 462 aa10.08□□□□□ -0.8
LRRC28-220ENST00000561253 EIF4G3O43432 1585 aaKnown RBP10.08□□□□□ -0.8
LRRC28-220ENST00000561253 ZNF777Q9ULD5 760 aaPredicted RBP10.07□□□□□ -0.8
LRRC28-220ENST00000561253 ABCA5Q8WWZ7 1642 aa10.07□□□□□ -0.8
LRRC28-220ENST00000561253 F12P00748 615 aaPredicted RBP10.06□□□□□ -0.8
LRRC28-220ENST00000561253 KCNC4Q03721 635 aa10.06□□□□□ -0.8
LRRC28-220ENST00000561253 NKX2-3Q8TAU0 364 aa10.06□□□□□ -0.8
LRRC28-220ENST00000561253 MAP10Q9P2G4 905 aa10.06□□□□□ -0.8
LRRC28-220ENST00000561253 WASHC4Q2M389 1173 aa10.05□□□□□ -0.8
LRRC28-220ENST00000561253 EVA1BQ9NVM1 165 aa10.05□□□□□ -0.8
LRRC28-220ENST00000561253 CCDC24Q8N4L8 307 aa10.04□□□□□ -0.8
LRRC28-220ENST00000561253 GAPVD1Q14C86 1478 aa10.04□□□□□ -0.8
LRRC28-220ENST00000561253 S1PR4O95977 384 aa10.03□□□□□ -0.8
LRRC28-220ENST00000561253 KCNH2Q12809 1159 aa10.03□□□□□ -0.8
LRRC28-220ENST00000561253 IRF5Q13568 498 aa10.03□□□□□ -0.8
LRRC28-220ENST00000561253 FKBPLQ9UIM3 349 aa10.03□□□□□ -0.8
LRRC28-220ENST00000561253 GPR37L1O60883 481 aa10.02□□□□□ -0.81
LRRC28-220ENST00000561253 ITGBL1O95965 494 aaPredicted RBP10.02□□□□□ -0.81
LRRC28-220ENST00000561253 C1orf115Q9H7X2 142 aa10.02□□□□□ -0.81
LRRC28-220ENST00000561253 GRIN2BQ13224 1484 aa10.02□□□□□ -0.81
LRRC28-220ENST00000561253 ARMC2Q8NEN0 867 aa10.01□□□□□ -0.81
LRRC28-220ENST00000561253 MMRN1Q13201 1228 aa10□□□□□ -0.81
LRRC28-220ENST00000561253 ARID3AQ99856 593 aa10□□□□□ -0.81
LRRC28-220ENST00000561253 IGF1RP08069 1367 aa10□□□□□ -0.81
LRRC28-220ENST00000561253 SNAPC4Q5SXM2 1469 aa9.99□□□□□ -0.81
LRRC28-220ENST00000561253 MAGI1Q96QZ7 1491 aaPredicted RBP9.99□□□□□ -0.81
LRRC28-220ENST00000561253 ERICH3Q5RHP9 1530 aa9.99□□□□□ -0.81
LRRC28-220ENST00000561253 VAC14Q08AM6 782 aa9.99□□□□□ -0.81
LRRC28-220ENST00000561253 FCF1Q9Y324 198 aaKnown RBP9.99□□□□□ -0.81
LRRC28-220ENST00000561253 ZC3H4Q9UPT8 1303 aaKnown RBP9.99□□□□□ -0.81
LRRC28-220ENST00000561253 KIF27Q86VH2 1401 aa9.99□□□□□ -0.81
LRRC28-220ENST00000561253 RUSC2Q8N2Y8 1516 aa9.98□□□□□ -0.81
LRRC28-220ENST00000561253 POM121CA8CG34 1229 aa9.98□□□□□ -0.81
LRRC28-220ENST00000561253 GGCXP38435 758 aa9.98□□□□□ -0.81
LRRC28-220ENST00000561253 UNC93B1Q9H1C4 597 aa9.98□□□□□ -0.81
LRRC28-220ENST00000561253 NBPF14Q5TI25 921 aa9.97□□□□□ -0.81
LRRC28-220ENST00000561253 PLSCR2Q9NRY7 297 aa9.97□□□□□ -0.81
LRRC28-220ENST00000561253 CCDC82Q8N4S0 544 aa9.96□□□□□ -0.82
LRRC28-220ENST00000561253 GPKOWQ92917 476 aaPredicted RBP eCLIP9.96□□□□□ -0.82
LRRC28-220ENST00000561253 CALR3Q96L12 384 aaKnown RBP9.96□□□□□ -0.82
LRRC28-220ENST00000561253 ZBBXA8MT70 800 aa9.95□□□□□ -0.82
LRRC28-220ENST00000561253 PPEF1O14829 653 aaPredicted RBP9.95□□□□□ -0.82
LRRC28-220ENST00000561253 NR1H3Q13133 447 aa9.95□□□□□ -0.82
LRRC28-220ENST00000561253 PTCRAQ6ISU1 281 aaPredicted RBP9.95□□□□□ -0.82
LRRC28-220ENST00000561253 GLMNQ92990 594 aa9.95□□□□□ -0.82
LRRC28-220ENST00000561253 CCDC97Q96F63 343 aaPredicted RBP9.95□□□□□ -0.82
LRRC28-220ENST00000561253 SYNJ2O15056 1496 aa9.95□□□□□ -0.82
LRRC28-220ENST00000561253 ADAMTS12P58397 1594 aa9.95□□□□□ -0.82
LRRC28-220ENST00000561253 PBRM1Q86U86 1689 aa9.95□□□□□ -0.82
LRRC28-220ENST00000561253 FHAD1B1AJZ9 1412 aa9.94□□□□□ -0.82
LRRC28-220ENST00000561253 PDXDC2PQ6P474 469 aa9.94□□□□□ -0.82
LRRC28-220ENST00000561253 SERPINA10Q9UK55 444 aa9.94□□□□□ -0.82
LRRC28-220ENST00000561253 FBXO45P0C2W1 286 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms