RNA–Protein interactions for RNA: ENST00000560959.5

TPM1-226, Transcript of tropomyosin 1, humanhuman

TSL 2 BASIC

Gene TPM1, Length 925 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-226ENST00000560959 TRAK1Q9UPV9 953 aa27.42■■□□□ 1.98
TPM1-226ENST00000560959 ALS2Q96Q42 1657 aa27.42■■□□□ 1.98
TPM1-226ENST00000560959 PRR36Q9H6K5 1346 aa27.41■■□□□ 1.98
TPM1-226ENST00000560959 ADGRB1O14514 1584 aa27.41■■□□□ 1.98
TPM1-226ENST00000560959 STAC3Q96MF2 364 aa27.41■■□□□ 1.98
TPM1-226ENST00000560959 HIRIP3Q9BW71 556 aaPredicted RBP27.41■■□□□ 1.98
TPM1-226ENST00000560959 NGDNQ8NEJ9 315 aaKnown RBP27.39■■□□□ 1.98
TPM1-226ENST00000560959 PRDM11Q9NQV5 511 aa27.39■■□□□ 1.98
TPM1-226ENST00000560959 TULP4Q9NRJ4 1543 aa27.39■■□□□ 1.98
TPM1-226ENST00000560959 RGPD1P0DJD0 1748 aa27.38■■□□□ 1.97
TPM1-226ENST00000560959 MINK1Q8N4C8 1332 aaPredicted RBP27.38■■□□□ 1.97
TPM1-226ENST00000560959 R3HDM1Q15032 1099 aaKnown RBP27.37■■□□□ 1.97
TPM1-226ENST00000560959 FAM182BQ5T319 152 aa27.37■■□□□ 1.97
TPM1-226ENST00000560959 FAM196AQ6ZSG2 479 aa27.37■■□□□ 1.97
TPM1-226ENST00000560959 SPATA31A1Q5TZJ5 1347 aa27.37■■□□□ 1.97
TPM1-226ENST00000560959 THSD7AQ9UPZ6 1657 aa27.36■■□□□ 1.97
TPM1-226ENST00000560959 PAK3O75914 559 aaPredicted RBP27.35■■□□□ 1.97
TPM1-226ENST00000560959 CAMKK2Q96RR4 588 aa27.35■■□□□ 1.97
TPM1-226ENST00000560959 EZH2Q15910 746 aaKnown RBP27.34■■□□□ 1.97
TPM1-226ENST00000560959 PARD3Q8TEW0 1356 aa27.33■■□□□ 1.97
TPM1-226ENST00000560959 KIAA0232Q92628 1395 aa27.3■■□□□ 1.96
TPM1-226ENST00000560959 CRYBG1Q9Y4K1 1723 aa27.3■■□□□ 1.96
TPM1-226ENST00000560959 TRIM37O94972 964 aa27.29■■□□□ 1.96
TPM1-226ENST00000560959 BARGINQ6ZT62 677 aa27.28■■□□□ 1.96
TPM1-226ENST00000560959 DCAF11Q8TEB1 546 aa27.28■■□□□ 1.96
TPM1-226ENST00000560959 NUDT16Q96DE0 195 aaKnown RBP27.28■■□□□ 1.96
TPM1-226ENST00000560959 KDM2AQ9Y2K7 1162 aa27.27■■□□□ 1.96
TPM1-226ENST00000560959 TNS1Q9HBL0 1735 aaKnown RBP27.27■■□□□ 1.96
TPM1-226ENST00000560959 APBA3O96018 575 aa27.26■■□□□ 1.95
TPM1-226ENST00000560959 ATP7BP35670 1465 aa27.25■■□□□ 1.95
TPM1-226ENST00000560959 CHRNA2Q15822 529 aa27.25■■□□□ 1.95
TPM1-226ENST00000560959 STRN4Q9NRL3 753 aa27.25■■□□□ 1.95
TPM1-226ENST00000560959 ZC3H6P61129 1189 aaKnown RBP27.23■■□□□ 1.95
TPM1-226ENST00000560959 EVA1CP58658 441 aa27.22■■□□□ 1.95
TPM1-226ENST00000560959 PDE3BQ13370 1112 aa27.22■■□□□ 1.95
TPM1-226ENST00000560959 POLR3AO14802 1390 aaPredicted RBP27.22■■□□□ 1.95
TPM1-226ENST00000560959 NBPF8Q3BBV2 869 aa27.2■■□□□ 1.94
TPM1-226ENST00000560959 CCDC61Q9Y6R9 512 aa27.2■■□□□ 1.94
TPM1-226ENST00000560959 RAB3GAP2Q9H2M9 1393 aa27.2■■□□□ 1.94
TPM1-226ENST00000560959 PLEKHG3A1L390 1219 aa27.19■■□□□ 1.94
TPM1-226ENST00000560959 NBPF14Q5TI25 921 aa27.19■■□□□ 1.94
TPM1-226ENST00000560959 CDK19Q9BWU1 502 aa27.19■■□□□ 1.94
TPM1-226ENST00000560959 THRAP3Q9Y2W1 955 aaKnown RBP27.19■■□□□ 1.94
TPM1-226ENST00000560959 SSH2Q76I76 1423 aa27.18■■□□□ 1.94
TPM1-226ENST00000560959 C11orf95C9JLR9 678 aaPredicted RBP27.18■■□□□ 1.94
TPM1-226ENST00000560959 TCP11L2Q8N4U5 519 aa27.18■■□□□ 1.94
TPM1-226ENST00000560959 ITSN1Q15811 1721 aa27.17■■□□□ 1.94
TPM1-226ENST00000560959 USP35Q9P2H5 1018 aa27.17■■□□□ 1.94
TPM1-226ENST00000560959 CPDO75976 1380 aa27.17■■□□□ 1.94
TPM1-226ENST00000560959 ACEP12821 1306 aa27.16■■□□□ 1.94
TPM1-226ENST00000560959 NUTM2GQ5VZR2 741 aa27.15■■□□□ 1.94
TPM1-226ENST00000560959 PHRF1Q9P1Y6 1649 aaKnown RBP27.15■■□□□ 1.94
TPM1-226ENST00000560959 LARP1Q6PKG0 1096 aaKnown RBP27.14■■□□□ 1.94
TPM1-226ENST00000560959 ABTB2Q8N961 1025 aa27.13■■□□□ 1.93
TPM1-226ENST00000560959 USP19O94966 1318 aa27.12■■□□□ 1.93
TPM1-226ENST00000560959 CAMTA1Q9Y6Y1 1673 aa27.11■■□□□ 1.93
TPM1-226ENST00000560959 ARHGEF28Q8N1W1 1705 aaKnown RBP27.1■■□□□ 1.93
TPM1-226ENST00000560959 NLRP13Q86W25 1043 aa27.1■■□□□ 1.93
TPM1-226ENST00000560959 RREB1Q92766 1687 aa27.08■■□□□ 1.93
TPM1-226ENST00000560959 GCP02774 474 aa27.08■■□□□ 1.93
TPM1-226ENST00000560959 SPON1Q9HCB6 807 aa27.08■■□□□ 1.93
TPM1-226ENST00000560959 YY1P25490 414 aa27.07■■□□□ 1.92
TPM1-226ENST00000560959 BRD4O60885 1362 aaPredicted RBP27.07■■□□□ 1.92
TPM1-226ENST00000560959 NRKQ7Z2Y5 1582 aa27.05■■□□□ 1.92
TPM1-226ENST00000560959 LMO7Q8WWI1 1683 aa27.05■■□□□ 1.92
TPM1-226ENST00000560959 KCNQ2O43526 872 aa27.05■■□□□ 1.92
TPM1-226ENST00000560959 PLSCR1O15162 318 aa27.04■■□□□ 1.92
TPM1-226ENST00000560959 TOPAZ1Q8N9V7 1692 aa27.04■■□□□ 1.92
TPM1-226ENST00000560959 NUP188Q5SRE5 1749 aa27.03■■□□□ 1.92
TPM1-226ENST00000560959 NINLQ9Y2I6 1382 aa27.01■■□□□ 1.91
TPM1-226ENST00000560959 DCAF8L1A6NGE4 600 aa27.01■■□□□ 1.91
TPM1-226ENST00000560959 PPP1R1BQ9UD71 204 aaPredicted RBP27.01■■□□□ 1.91
TPM1-226ENST00000560959 COL5A2P05997 1499 aaPredicted RBP27■■□□□ 1.91
TPM1-226ENST00000560959 CRB1P82279 1406 aa27■■□□□ 1.91
TPM1-226ENST00000560959 OVOS2A0A0G2JMS6 1433 aa26.99■■□□□ 1.91
TPM1-226ENST00000560959 OVOS2A0A0J9YW53 1432 aa26.99■■□□□ 1.91
TPM1-226ENST00000560959 OVOS2Q6IE36 1432 aa26.99■■□□□ 1.91
TPM1-226ENST00000560959 PARP4Q9UKK3 1724 aaKnown RBP26.98■■□□□ 1.91
TPM1-226ENST00000560959 AATKQ6ZMQ8 1374 aa26.97■■□□□ 1.91
TPM1-226ENST00000560959 SRPK2P78362 688 aaKnown RBP26.96■■□□□ 1.91
TPM1-226ENST00000560959 PPIP5K1Q6PFW1 1433 aa26.96■■□□□ 1.91
TPM1-226ENST00000560959 KIAA1210Q9ULL0 1709 aa26.95■■□□□ 1.9
TPM1-226ENST00000560959 DDB1Q16531 1140 aa26.94■■□□□ 1.9
TPM1-226ENST00000560959 BCL11BQ9C0K0 894 aaPredicted RBP26.94■■□□□ 1.9
TPM1-226ENST00000560959 NBPF1Q3BBV0 1214 aa26.93■■□□□ 1.9
TPM1-226ENST00000560959 NLRP6P59044 892 aa26.92■■□□□ 1.9
TPM1-226ENST00000560959 CDCA7Q9BWT1 371 aaPredicted RBP26.92■■□□□ 1.9
TPM1-226ENST00000560959 CENPJQ9HC77 1338 aaPredicted RBP26.91■■□□□ 1.9
TPM1-226ENST00000560959 BCL9O00512 1426 aa26.91■■□□□ 1.9
TPM1-226ENST00000560959 RGPD3A6NKT7 1758 aaPredicted RBP26.91■■□□□ 1.9
TPM1-226ENST00000560959 RGPD4Q7Z3J3 1758 aa26.91■■□□□ 1.9
TPM1-226ENST00000560959 PEAK1Q9H792 1746 aa26.9■■□□□ 1.9
TPM1-226ENST00000560959 CABP2Q9NPB3 220 aa26.9■■□□□ 1.9
TPM1-226ENST00000560959 TOM1L2Q6ZVM7 507 aa26.89■■□□□ 1.9
TPM1-226ENST00000560959 CABP1Q9NZU7 370 aa26.89■■□□□ 1.9
TPM1-226ENST00000560959 USP6P35125 1406 aa26.89■■□□□ 1.89
TPM1-226ENST00000560959 SLIT3O75094 1523 aa26.87■■□□□ 1.89
TPM1-226ENST00000560959 PROM2Q8N271 834 aa26.86■■□□□ 1.89
TPM1-226ENST00000560959 ANO8Q9HCE9 1232 aaPredicted RBP26.86■■□□□ 1.89
TPM1-226ENST00000560959 WDR17Q8IZU2 1322 aa26.86■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms