RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 ARHGEF15O94989 841 aa3.76□□□□□ -1.81
USP3-209ENST00000558925 LINC01559Q495D7 138 aa3.76□□□□□ -1.81
USP3-209ENST00000558925 C6orf118Q5T5N4 469 aa3.76□□□□□ -1.81
USP3-209ENST00000558925 DNMT3LQ9UJW3 386 aa3.76□□□□□ -1.81
USP3-209ENST00000558925 RNF225M0QZC1 329 aaPredicted RBP3.75□□□□□ -1.81
USP3-209ENST00000558925 HOXA2O43364 376 aa3.75□□□□□ -1.81
USP3-209ENST00000558925 MAN1A2O60476 641 aa3.75□□□□□ -1.81
USP3-209ENST00000558925 ADH1CP00326 375 aa3.75□□□□□ -1.81
USP3-209ENST00000558925 IGHA1P01876 353 aa3.75□□□□□ -1.81
USP3-209ENST00000558925 SCARF1Q14162 830 aa3.75□□□□□ -1.81
USP3-209ENST00000558925 BAP1Q92560 729 aa3.75□□□□□ -1.81
USP3-209ENST00000558925 COL25A1Q9BXS0 654 aaPredicted RBP3.75□□□□□ -1.81
USP3-209ENST00000558925 NR3C2P08235 984 aa3.74□□□□□ -1.81
USP3-209ENST00000558925 KRTAP1-3Q8IUG1 177 aa3.74□□□□□ -1.81
USP3-209ENST00000558925 SVOPQ8N4V2 548 aa3.74□□□□□ -1.81
USP3-209ENST00000558925 ITPKCQ96DU7 683 aa3.74□□□□□ -1.81
USP3-209ENST00000558925 UNC93B1Q9H1C4 597 aa3.74□□□□□ -1.81
USP3-209ENST00000558925 SOS2Q07890 1332 aaPredicted RBP3.73□□□□□ -1.81
USP3-209ENST00000558925 ZIC2O95409 532 aaPredicted RBP3.73□□□□□ -1.81
USP3-209ENST00000558925 SLURP2P0DP57 97 aa3.73□□□□□ -1.81
USP3-209ENST00000558925 MPNDQ8N594 471 aa3.73□□□□□ -1.81
USP3-209ENST00000558925 ZNF511Q8NB15 262 aa3.73□□□□□ -1.81
USP3-209ENST00000558925 PSMG3-AS1Q96PY0 264 aa3.73□□□□□ -1.81
USP3-209ENST00000558925 CCNYL3P0C7X3 344 aa3.72□□□□□ -1.81
USP3-209ENST00000558925 TPRNQ4KMQ1 711 aa3.72□□□□□ -1.81
USP3-209ENST00000558925 PCDHGC3Q9UN70 934 aa3.72□□□□□ -1.81
USP3-209ENST00000558925 PROCP04070 461 aa3.71□□□□□ -1.82
USP3-209ENST00000558925 BMP2P12643 396 aa3.71□□□□□ -1.82
USP3-209ENST00000558925 VARSP26640 1264 aaKnown RBP3.71□□□□□ -1.82
USP3-209ENST00000558925 PLA2G4EQ3MJ16 856 aa3.71□□□□□ -1.82
USP3-209ENST00000558925 RETREG3Q86VR2 466 aa3.71□□□□□ -1.82
USP3-209ENST00000558925 LINC00528Q8N1L1 170 aa3.71□□□□□ -1.82
USP3-209ENST00000558925 SPOCK3Q9BQ16 436 aa3.71□□□□□ -1.82
USP3-209ENST00000558925 EVA1BQ9NVM1 165 aa3.71□□□□□ -1.82
USP3-209ENST00000558925 PLEKHG3A1L390 1219 aa3.7□□□□□ -1.82
USP3-209ENST00000558925 TESPA1A2RU30 521 aaPredicted RBP3.7□□□□□ -1.82
USP3-209ENST00000558925 GRM5P41594 1212 aa3.7□□□□□ -1.82
USP3-209ENST00000558925 USP46P62068 366 aa3.7□□□□□ -1.82
USP3-209ENST00000558925 FOXK2Q01167 660 aa3.7□□□□□ -1.82
USP3-209ENST00000558925 PTSQ03393 145 aa3.7□□□□□ -1.82
USP3-209ENST00000558925 KANK3Q6NY19 840 aa3.7□□□□□ -1.82
USP3-209ENST00000558925 LYPD4Q6UWN0 246 aa3.7□□□□□ -1.82
USP3-209ENST00000558925 MEIOBQ8N635 442 aa3.7□□□□□ -1.82
USP3-209ENST00000558925 NANOS1Q8WY41 292 aaKnown RBP3.7□□□□□ -1.82
USP3-209ENST00000558925 CDK15Q96Q40 435 aa3.7□□□□□ -1.82
USP3-209ENST00000558925 MS4A1P11836 297 aa3.69□□□□□ -1.82
USP3-209ENST00000558925 KCNH2Q12809 1159 aa3.69□□□□□ -1.82
USP3-209ENST00000558925 PTPRNQ16849 979 aa3.69□□□□□ -1.82
USP3-209ENST00000558925 C4orf48Q5BLP8 95 aa3.69□□□□□ -1.82
USP3-209ENST00000558925 Q8N3U1 123 aa3.69□□□□□ -1.82
USP3-209ENST00000558925 FOXJ1Q92949 421 aa3.69□□□□□ -1.82
USP3-209ENST00000558925 MSTNO14793 375 aa3.68□□□□□ -1.82
USP3-209ENST00000558925 MDM2Q00987 491 aaPredicted RBP3.68□□□□□ -1.82
USP3-209ENST00000558925 ARID5BQ14865 1188 aa3.68□□□□□ -1.82
USP3-209ENST00000558925 CCDC155Q8N6L0 562 aa3.68□□□□□ -1.82
USP3-209ENST00000558925 DCAF5Q96JK2 942 aa3.68□□□□□ -1.82
USP3-209ENST00000558925 SLC35F4A4IF30 521 aa3.67□□□□□ -1.82
USP3-209ENST00000558925 FIGNL2A6NMB9 653 aa3.67□□□□□ -1.82
USP3-209ENST00000558925 MARSP56192 900 aaKnown RBP3.67□□□□□ -1.82
USP3-209ENST00000558925 VWA5B2Q8N398 1253 aa3.67□□□□□ -1.82
USP3-209ENST00000558925 CNTNAP5Q8WYK1 1306 aa3.67□□□□□ -1.82
USP3-209ENST00000558925 C6orf229H3BNL8 230 aa3.66□□□□□ -1.82
USP3-209ENST00000558925 ADAMTS2O95450 1211 aa3.66□□□□□ -1.82
USP3-209ENST00000558925 FDX1P10109 184 aa3.66□□□□□ -1.82
USP3-209ENST00000558925 ZNF800Q2TB10 664 aaPredicted RBP eCLIP3.66□□□□□ -1.82
USP3-209ENST00000558925 FAM174AQ8TBP5 190 aa3.66□□□□□ -1.82
USP3-209ENST00000558925 SCARF2Q96GP6 870 aaPredicted RBP3.66□□□□□ -1.82
USP3-209ENST00000558925 KRTAP4-12Q9BQ66 201 aa3.66□□□□□ -1.82
USP3-209ENST00000558925 TTLL8A6PVC2 850 aa3.65□□□□□ -1.83
USP3-209ENST00000558925 CELA2BP08218 269 aaPredicted RBP3.65□□□□□ -1.83
USP3-209ENST00000558925 ITGA6P23229 1130 aa3.65□□□□□ -1.83
USP3-209ENST00000558925 NR5A1Q13285 461 aa3.65□□□□□ -1.83
USP3-209ENST00000558925 GAS6Q14393 721 aa3.65□□□□□ -1.83
USP3-209ENST00000558925 LCE3BQ5TA77 95 aa3.65□□□□□ -1.83
USP3-209ENST00000558925 SENP3-EIF4A1A0A087X0R7 540 aa3.64□□□□□ -1.83
USP3-209ENST00000558925 CDC14CA4D256 554 aa3.64□□□□□ -1.83
USP3-209ENST00000558925 K7ELQ4 463 aaPredicted RBP3.64□□□□□ -1.83
USP3-209ENST00000558925 NDUFV2P19404 249 aa3.64□□□□□ -1.83
USP3-209ENST00000558925 PRR7Q8TB68 274 aa3.64□□□□□ -1.83
USP3-209ENST00000558925 KRTAP9-9Q9BYP9 154 aa3.64□□□□□ -1.83
USP3-209ENST00000558925 KRTAP9-4Q9BYQ2 154 aa3.64□□□□□ -1.83
USP3-209ENST00000558925 FAM217BQ9NTX9 383 aaPredicted RBP3.64□□□□□ -1.83
USP3-209ENST00000558925 MAP10Q9P2G4 905 aa3.64□□□□□ -1.83
USP3-209ENST00000558925 UPP2O95045 317 aa3.63□□□□□ -1.83
USP3-209ENST00000558925 FSHRP23945 695 aa3.63□□□□□ -1.83
USP3-209ENST00000558925 MAP2K5Q13163 448 aa3.63□□□□□ -1.83
USP3-209ENST00000558925 CBLBQ13191 982 aa3.63□□□□□ -1.83
USP3-209ENST00000558925 SH3RF1Q7Z6J0 888 aa3.63□□□□□ -1.83
USP3-209ENST00000558925 TSEN34Q9BSV6 310 aaKnown RBP3.63□□□□□ -1.83
USP3-209ENST00000558925 CUEDC1Q9NWM3 386 aaPredicted RBP3.63□□□□□ -1.83
USP3-209ENST00000558925 MOXD2PA6NHM9 499 aa3.62□□□□□ -1.83
USP3-209ENST00000558925 IRF6O14896 467 aa3.62□□□□□ -1.83
USP3-209ENST00000558925 SPTLC1O15269 473 aa3.62□□□□□ -1.83
USP3-209ENST00000558925 SPINT1O43278 529 aa3.62□□□□□ -1.83
USP3-209ENST00000558925 F12P00748 615 aaPredicted RBP3.62□□□□□ -1.83
USP3-209ENST00000558925 ITGB7P26010 798 aa3.62□□□□□ -1.83
USP3-209ENST00000558925 SV2AQ7L0J3 742 aa3.62□□□□□ -1.83
USP3-209ENST00000558925 GPIHBP1Q8IV16 184 aa3.62□□□□□ -1.83
USP3-209ENST00000558925 SPIRE2Q8WWL2 714 aa3.62□□□□□ -1.83
USP3-209ENST00000558925 CFAP99D6REC4 459 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms