RNA–Protein interactions for RNA: ENST00000553998.5

ABCD4-220, Transcript of ATP binding cassette subfamily D member 4, humanhuman

TSL 3

Gene ABCD4, Length 478 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD4-220ENST00000553998 THSD7AQ9UPZ6 1657 aa11.43□□□□□ -0.58
ABCD4-220ENST00000553998 COL14A1Q05707 1796 aaKnown RBP11.42□□□□□ -0.58
ABCD4-220ENST00000553998 TRIM37O94972 964 aa11.42□□□□□ -0.58
ABCD4-220ENST00000553998 SAFB2Q14151 953 aaKnown RBP eCLIP11.42□□□□□ -0.58
ABCD4-220ENST00000553998 POGKQ9P215 609 aa11.42□□□□□ -0.58
ABCD4-220ENST00000553998 EIF3AQ14152 1382 aaKnown RBP11.41□□□□□ -0.58
ABCD4-220ENST00000553998 ADGRB2O60241 1585 aa11.41□□□□□ -0.58
ABCD4-220ENST00000553998 RGPD1P0DJD0 1748 aa11.41□□□□□ -0.58
ABCD4-220ENST00000553998 TRPM3Q9HCF6 1732 aaPredicted RBP11.41□□□□□ -0.58
ABCD4-220ENST00000553998 WASLO00401 505 aaPredicted RBP11.41□□□□□ -0.58
ABCD4-220ENST00000553998 APBA3O96018 575 aa11.41□□□□□ -0.58
ABCD4-220ENST00000553998 BARGINQ6ZT62 677 aa11.41□□□□□ -0.58
ABCD4-220ENST00000553998 PRDM11Q9NQV5 511 aa11.41□□□□□ -0.58
ABCD4-220ENST00000553998 YY1P25490 414 aa11.4□□□□□ -0.58
ABCD4-220ENST00000553998 ALS2Q96Q42 1657 aa11.4□□□□□ -0.59
ABCD4-220ENST00000553998 NGDNQ8NEJ9 315 aaKnown RBP11.39□□□□□ -0.59
ABCD4-220ENST00000553998 KIAA0232Q92628 1395 aa11.39□□□□□ -0.59
ABCD4-220ENST00000553998 RGPD8O14715 1765 aaPredicted RBP11.39□□□□□ -0.59
ABCD4-220ENST00000553998 ADGRB1O14514 1584 aa11.38□□□□□ -0.59
ABCD4-220ENST00000553998 NBPF8Q3BBV2 869 aa11.38□□□□□ -0.59
ABCD4-220ENST00000553998 NBPF14Q5TI25 921 aa11.38□□□□□ -0.59
ABCD4-220ENST00000553998 HIRIP3Q9BW71 556 aaPredicted RBP11.38□□□□□ -0.59
ABCD4-220ENST00000553998 TULP4Q9NRJ4 1543 aa11.38□□□□□ -0.59
ABCD4-220ENST00000553998 TNS1Q9HBL0 1735 aaKnown RBP11.38□□□□□ -0.59
ABCD4-220ENST00000553998 TRIM26Q12899 539 aaPredicted RBP11.37□□□□□ -0.59
ABCD4-220ENST00000553998 STAC3Q96MF2 364 aa11.37□□□□□ -0.59
ABCD4-220ENST00000553998 TRAK1Q9UPV9 953 aa11.37□□□□□ -0.59
ABCD4-220ENST00000553998 UTRNP46939 3433 aa11.36□□□□□ -0.59
ABCD4-220ENST00000553998 C11orf95C9JLR9 678 aaPredicted RBP11.36□□□□□ -0.59
ABCD4-220ENST00000553998 KCNQ2O43526 872 aa11.36□□□□□ -0.59
ABCD4-220ENST00000553998 PAK3O75914 559 aaPredicted RBP11.36□□□□□ -0.59
ABCD4-220ENST00000553998 PDE3BQ13370 1112 aa11.36□□□□□ -0.59
ABCD4-220ENST00000553998 CHRNA2Q15822 529 aa11.36□□□□□ -0.59
ABCD4-220ENST00000553998 SPON1Q9HCB6 807 aa11.36□□□□□ -0.59
ABCD4-220ENST00000553998 THRAP3Q9Y2W1 955 aaKnown RBP11.36□□□□□ -0.59
ABCD4-220ENST00000553998 MINK1Q8N4C8 1332 aaPredicted RBP11.35□□□□□ -0.59
ABCD4-220ENST00000553998 CRYBG1Q9Y4K1 1723 aa11.35□□□□□ -0.59
ABCD4-220ENST00000553998 NUDT16Q96DE0 195 aaKnown RBP11.35□□□□□ -0.59
ABCD4-220ENST00000553998 STRN4Q9NRL3 753 aa11.35□□□□□ -0.59
ABCD4-220ENST00000553998 NINLQ9Y2I6 1382 aa11.35□□□□□ -0.59
ABCD4-220ENST00000553998 SSH2Q76I76 1423 aa11.35□□□□□ -0.59
ABCD4-220ENST00000553998 POLR3AO14802 1390 aaPredicted RBP11.34□□□□□ -0.59
ABCD4-220ENST00000553998 CPDO75976 1380 aa11.34□□□□□ -0.59
ABCD4-220ENST00000553998 PLSCR1O15162 318 aa11.34□□□□□ -0.59
ABCD4-220ENST00000553998 ZC3H6P61129 1189 aaKnown RBP11.34□□□□□ -0.59
ABCD4-220ENST00000553998 TCP11L2Q8N4U5 519 aa11.34□□□□□ -0.59
ABCD4-220ENST00000553998 ATP7BP35670 1465 aa11.33□□□□□ -0.6
ABCD4-220ENST00000553998 PLEKHG3A1L390 1219 aa11.33□□□□□ -0.6
ABCD4-220ENST00000553998 EVA1CP58658 441 aa11.33□□□□□ -0.6
ABCD4-220ENST00000553998 LARP1Q6PKG0 1096 aaKnown RBP11.33□□□□□ -0.6
ABCD4-220ENST00000553998 USP35Q9P2H5 1018 aa11.32□□□□□ -0.6
ABCD4-220ENST00000553998 RREB1Q92766 1687 aa11.32□□□□□ -0.6
ABCD4-220ENST00000553998 USP19O94966 1318 aa11.32□□□□□ -0.6
ABCD4-220ENST00000553998 CAMTA1Q9Y6Y1 1673 aa11.31□□□□□ -0.6
ABCD4-220ENST00000553998 DCAF8L1A6NGE4 600 aa11.31□□□□□ -0.6
ABCD4-220ENST00000553998 CCDC61Q9Y6R9 512 aa11.31□□□□□ -0.6
ABCD4-220ENST00000553998 ACEP12821 1306 aa11.31□□□□□ -0.6
ABCD4-220ENST00000553998 CDK19Q9BWU1 502 aa11.3□□□□□ -0.6
ABCD4-220ENST00000553998 PPP1R1BQ9UD71 204 aaPredicted RBP11.3□□□□□ -0.6
ABCD4-220ENST00000553998 GCP02774 474 aa11.29□□□□□ -0.6
ABCD4-220ENST00000553998 NUTM2GQ5VZR2 741 aa11.29□□□□□ -0.6
ABCD4-220ENST00000553998 NUP188Q5SRE5 1749 aa11.29□□□□□ -0.6
ABCD4-220ENST00000553998 PROM2Q8N271 834 aa11.28□□□□□ -0.6
ABCD4-220ENST00000553998 ABTB2Q8N961 1025 aa11.28□□□□□ -0.6
ABCD4-220ENST00000553998 DCAF11Q8TEB1 546 aa11.28□□□□□ -0.6
ABCD4-220ENST00000553998 BCL11BQ9C0K0 894 aaPredicted RBP11.28□□□□□ -0.6
ABCD4-220ENST00000553998 BCL9O00512 1426 aa11.27□□□□□ -0.6
ABCD4-220ENST00000553998 NLRP13Q86W25 1043 aa11.27□□□□□ -0.61
ABCD4-220ENST00000553998 KDM2AQ9Y2K7 1162 aa11.27□□□□□ -0.61
ABCD4-220ENST00000553998 PHRF1Q9P1Y6 1649 aaKnown RBP11.27□□□□□ -0.61
ABCD4-220ENST00000553998 BRD4O60885 1362 aaPredicted RBP11.27□□□□□ -0.61
ABCD4-220ENST00000553998 LMO7Q8WWI1 1683 aa11.27□□□□□ -0.61
ABCD4-220ENST00000553998 OVOS2A0A0G2JMS6 1433 aa11.26□□□□□ -0.61
ABCD4-220ENST00000553998 OVOS2A0A0J9YW53 1432 aa11.26□□□□□ -0.61
ABCD4-220ENST00000553998 OVOS2Q6IE36 1432 aa11.26□□□□□ -0.61
ABCD4-220ENST00000553998 COL5A2P05997 1499 aaPredicted RBP11.26□□□□□ -0.61
ABCD4-220ENST00000553998 PTGER2P43116 358 aa11.26□□□□□ -0.61
ABCD4-220ENST00000553998 ANO8Q9HCE9 1232 aaPredicted RBP11.26□□□□□ -0.61
ABCD4-220ENST00000553998 RAB3GAP2Q9H2M9 1393 aa11.26□□□□□ -0.61
ABCD4-220ENST00000553998 CRB1P82279 1406 aa11.26□□□□□ -0.61
ABCD4-220ENST00000553998 ZNF784Q8NCA9 323 aaPredicted RBP11.25□□□□□ -0.61
ABCD4-220ENST00000553998 AATKQ6ZMQ8 1374 aa11.25□□□□□ -0.61
ABCD4-220ENST00000553998 NRKQ7Z2Y5 1582 aa11.24□□□□□ -0.61
ABCD4-220ENST00000553998 DDB1Q16531 1140 aa11.24□□□□□ -0.61
ABCD4-220ENST00000553998 PDGFDQ9GZP0 370 aaPredicted RBP11.24□□□□□ -0.61
ABCD4-220ENST00000553998 PTF1AQ7RTS3 328 aa11.23□□□□□ -0.61
ABCD4-220ENST00000553998 SGIP1Q9BQI5 828 aa11.23□□□□□ -0.61
ABCD4-220ENST00000553998 CDCA7Q9BWT1 371 aaPredicted RBP11.23□□□□□ -0.61
ABCD4-220ENST00000553998 PEAK1Q9H792 1746 aa11.23□□□□□ -0.61
ABCD4-220ENST00000553998 PARP4Q9UKK3 1724 aaKnown RBP11.23□□□□□ -0.61
ABCD4-220ENST00000553998 MARCH10Q8NA82 808 aaPredicted RBP11.22□□□□□ -0.61
ABCD4-220ENST00000553998 SYT17Q9BSW7 474 aa11.22□□□□□ -0.61
ABCD4-220ENST00000553998 RGPD3A6NKT7 1758 aaPredicted RBP11.21□□□□□ -0.61
ABCD4-220ENST00000553998 RGPD4Q7Z3J3 1758 aa11.21□□□□□ -0.61
ABCD4-220ENST00000553998 ITSN1Q15811 1721 aa11.21□□□□□ -0.61
ABCD4-220ENST00000553998 ZBTB7AO95365 584 aa11.21□□□□□ -0.61
ABCD4-220ENST00000553998 SLC15A2Q16348 729 aa11.21□□□□□ -0.61
ABCD4-220ENST00000553998 TXNRD1Q16881 649 aa11.21□□□□□ -0.61
ABCD4-220ENST00000553998 WDR17Q8IZU2 1322 aa11.2□□□□□ -0.62
ABCD4-220ENST00000553998 PCGF6Q9BYE7 350 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms