RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 HIRIP3Q9BW71 556 aaPredicted RBP19.39■□□□□ 0.69
VPS29-211ENST00000553128 DHX57Q6P158 1386 aaKnown RBP19.39■□□□□ 0.69
VPS29-211ENST00000553128 ANKARQ7Z5J8 1434 aa19.39■□□□□ 0.69
VPS29-211ENST00000553128 PRR36Q9H6K5 1346 aa19.38■□□□□ 0.69
VPS29-211ENST00000553128 CRYBG1Q9Y4K1 1723 aa19.38■□□□□ 0.69
VPS29-211ENST00000553128 ADGRB2O60241 1585 aa19.37■□□□□ 0.69
VPS29-211ENST00000553128 ACIN1Q9UKV3 1341 aaKnown RBP19.37■□□□□ 0.69
VPS29-211ENST00000553128 SPATA31A1Q5TZJ5 1347 aa19.36■□□□□ 0.69
VPS29-211ENST00000553128 APBA3O96018 575 aa19.36■□□□□ 0.69
VPS29-211ENST00000553128 MPHOSPH9Q99550 1183 aa19.36■□□□□ 0.69
VPS29-211ENST00000553128 PRDM11Q9NQV5 511 aa19.36■□□□□ 0.69
VPS29-211ENST00000553128 POGKQ9P215 609 aa19.36■□□□□ 0.69
VPS29-211ENST00000553128 FAM196AQ6ZSG2 479 aa19.35■□□□□ 0.69
VPS29-211ENST00000553128 GPRASP1Q5JY77 1395 aa19.34■□□□□ 0.69
VPS29-211ENST00000553128 CHRNA2Q15822 529 aa19.34■□□□□ 0.69
VPS29-211ENST00000553128 STRN4Q9NRL3 753 aa19.33■□□□□ 0.68
VPS29-211ENST00000553128 DLC1Q96QB1 1528 aa19.33■□□□□ 0.68
VPS29-211ENST00000553128 RREB1Q92766 1687 aa19.33■□□□□ 0.68
VPS29-211ENST00000553128 KIAA0232Q92628 1395 aa19.32■□□□□ 0.68
VPS29-211ENST00000553128 MINK1Q8N4C8 1332 aaPredicted RBP19.32■□□□□ 0.68
VPS29-211ENST00000553128 PAK3O75914 559 aaPredicted RBP19.32■□□□□ 0.68
VPS29-211ENST00000553128 NUP188Q5SRE5 1749 aa19.31■□□□□ 0.68
VPS29-211ENST00000553128 USP35Q9P2H5 1018 aa19.31■□□□□ 0.68
VPS29-211ENST00000553128 PARD3Q8TEW0 1356 aa19.31■□□□□ 0.68
VPS29-211ENST00000553128 TRAK1Q9UPV9 953 aa19.3■□□□□ 0.68
VPS29-211ENST00000553128 TULP4Q9NRJ4 1543 aa19.3■□□□□ 0.68
VPS29-211ENST00000553128 ADGRB1O14514 1584 aa19.29■□□□□ 0.68
VPS29-211ENST00000553128 NGDNQ8NEJ9 315 aaKnown RBP19.29■□□□□ 0.68
VPS29-211ENST00000553128 UTRNP46939 3433 aa19.28■□□□□ 0.68
VPS29-211ENST00000553128 ZC3H6P61129 1189 aaKnown RBP19.27■□□□□ 0.68
VPS29-211ENST00000553128 NUTM2GQ5VZR2 741 aa19.27■□□□□ 0.68
VPS29-211ENST00000553128 WASLO00401 505 aaPredicted RBP19.26■□□□□ 0.67
VPS29-211ENST00000553128 PHRF1Q9P1Y6 1649 aaKnown RBP19.25■□□□□ 0.67
VPS29-211ENST00000553128 NBPF8Q3BBV2 869 aa19.25■□□□□ 0.67
VPS29-211ENST00000553128 NBPF14Q5TI25 921 aa19.25■□□□□ 0.67
VPS29-211ENST00000553128 KCNQ2O43526 872 aa19.24■□□□□ 0.67
VPS29-211ENST00000553128 PDE3BQ13370 1112 aa19.24■□□□□ 0.67
VPS29-211ENST00000553128 BARGINQ6ZT62 677 aa19.24■□□□□ 0.67
VPS29-211ENST00000553128 SPON1Q9HCB6 807 aa19.24■□□□□ 0.67
VPS29-211ENST00000553128 PPP1R1BQ9UD71 204 aaPredicted RBP19.24■□□□□ 0.67
VPS29-211ENST00000553128 SSH2Q76I76 1423 aa19.24■□□□□ 0.67
VPS29-211ENST00000553128 LARP1Q6PKG0 1096 aaKnown RBP19.23■□□□□ 0.67
VPS29-211ENST00000553128 CAMTA1Q9Y6Y1 1673 aa19.23■□□□□ 0.67
VPS29-211ENST00000553128 EIF3AQ14152 1382 aaKnown RBP19.22■□□□□ 0.67
VPS29-211ENST00000553128 EVA1CP58658 441 aa19.21■□□□□ 0.67
VPS29-211ENST00000553128 ATP7BP35670 1465 aa19.21■□□□□ 0.67
VPS29-211ENST00000553128 NINLQ9Y2I6 1382 aa19.2■□□□□ 0.66
VPS29-211ENST00000553128 NUDT16Q96DE0 195 aaKnown RBP19.19■□□□□ 0.66
VPS29-211ENST00000553128 TCP11L2Q8N4U5 519 aa19.18■□□□□ 0.66
VPS29-211ENST00000553128 PDGFDQ9GZP0 370 aaPredicted RBP19.18■□□□□ 0.66
VPS29-211ENST00000553128 ANO8Q9HCE9 1232 aaPredicted RBP19.17■□□□□ 0.66
VPS29-211ENST00000553128 NRKQ7Z2Y5 1582 aa19.17■□□□□ 0.66
VPS29-211ENST00000553128 KDM2AQ9Y2K7 1162 aa19.16■□□□□ 0.66
VPS29-211ENST00000553128 LMO7Q8WWI1 1683 aa19.16■□□□□ 0.66
VPS29-211ENST00000553128 PTF1AQ7RTS3 328 aa19.15■□□□□ 0.66
VPS29-211ENST00000553128 DCAF8L1A6NGE4 600 aa19.14■□□□□ 0.65
VPS29-211ENST00000553128 ACEP12821 1306 aa19.14■□□□□ 0.65
VPS29-211ENST00000553128 ITSN1Q15811 1721 aa19.14■□□□□ 0.65
VPS29-211ENST00000553128 POLR3AO14802 1390 aaPredicted RBP19.13■□□□□ 0.65
VPS29-211ENST00000553128 CASZ1Q86V15 1759 aa19.13■□□□□ 0.65
VPS29-211ENST00000553128 PEAK1Q9H792 1746 aa19.12■□□□□ 0.65
VPS29-211ENST00000553128 PARP4Q9UKK3 1724 aaKnown RBP19.12■□□□□ 0.65
VPS29-211ENST00000553128 CPDO75976 1380 aa19.12■□□□□ 0.65
VPS29-211ENST00000553128 ZNF784Q8NCA9 323 aaPredicted RBP19.12■□□□□ 0.65
VPS29-211ENST00000553128 CDK19Q9BWU1 502 aa19.12■□□□□ 0.65
VPS29-211ENST00000553128 USP19O94966 1318 aa19.11■□□□□ 0.65
VPS29-211ENST00000553128 THRAP3Q9Y2W1 955 aaKnown RBP19.11■□□□□ 0.65
VPS29-211ENST00000553128 ARHGEF28Q8N1W1 1705 aaKnown RBP19.11■□□□□ 0.65
VPS29-211ENST00000553128 COL5A2P05997 1499 aaPredicted RBP19.1■□□□□ 0.65
VPS29-211ENST00000553128 ZBTB7AO95365 584 aa19.1■□□□□ 0.65
VPS29-211ENST00000553128 PROM2Q8N271 834 aa19.1■□□□□ 0.65
VPS29-211ENST00000553128 ABTB2Q8N961 1025 aa19.1■□□□□ 0.65
VPS29-211ENST00000553128 DCAF11Q8TEB1 546 aa19.1■□□□□ 0.65
VPS29-211ENST00000553128 OVOS2A0A0G2JMS6 1433 aa19.09■□□□□ 0.65
VPS29-211ENST00000553128 OVOS2A0A0J9YW53 1432 aa19.09■□□□□ 0.65
VPS29-211ENST00000553128 OVOS2Q6IE36 1432 aa19.09■□□□□ 0.65
VPS29-211ENST00000553128 TOPAZ1Q8N9V7 1692 aa19.09■□□□□ 0.65
VPS29-211ENST00000553128 PLSCR1O15162 318 aa19.09■□□□□ 0.65
VPS29-211ENST00000553128 PTGER2P43116 358 aa19.09■□□□□ 0.65
VPS29-211ENST00000553128 MYOM1P52179 1685 aa19.08■□□□□ 0.65
VPS29-211ENST00000553128 RGPD3A6NKT7 1758 aaPredicted RBP19.07■□□□□ 0.64
VPS29-211ENST00000553128 RGPD4Q7Z3J3 1758 aa19.07■□□□□ 0.64
VPS29-211ENST00000553128 GCP02774 474 aa19.07■□□□□ 0.64
VPS29-211ENST00000553128 ATF5Q9Y2D1 282 aaPredicted RBP19.07■□□□□ 0.64
VPS29-211ENST00000553128 SBF2Q86WG5 1849 aa19.07■□□□□ 0.64
VPS29-211ENST00000553128 PLEKHG3A1L390 1219 aa19.06■□□□□ 0.64
VPS29-211ENST00000553128 LRRC37A3O60309 1634 aa19.06■□□□□ 0.64
VPS29-211ENST00000553128 CRB1P82279 1406 aa19.06■□□□□ 0.64
VPS29-211ENST00000553128 BCL11BQ9C0K0 894 aaPredicted RBP19.05■□□□□ 0.64
VPS29-211ENST00000553128 CCDC61Q9Y6R9 512 aa19.05■□□□□ 0.64
VPS29-211ENST00000553128 ZBTB7CA1YPR0 619 aa19.04■□□□□ 0.64
VPS29-211ENST00000553128 DDB1Q16531 1140 aa19.03■□□□□ 0.64
VPS29-211ENST00000553128 FHDC1Q9C0D6 1143 aaPredicted RBP19.03■□□□□ 0.64
VPS29-211ENST00000553128 SENP3-EIF4A1A0A087X0R7 540 aa19.02■□□□□ 0.64
VPS29-211ENST00000553128 C11orf95C9JLR9 678 aaPredicted RBP19.02■□□□□ 0.64
VPS29-211ENST00000553128 NLRP13Q86W25 1043 aa19.02■□□□□ 0.64
VPS29-211ENST00000553128 MARCH10Q8NA82 808 aaPredicted RBP19.02■□□□□ 0.64
VPS29-211ENST00000553128 SYT17Q9BSW7 474 aa19.01■□□□□ 0.63
VPS29-211ENST00000553128 TOM1L2Q6ZVM7 507 aa18.99■□□□□ 0.63
VPS29-211ENST00000553128 AXIN2Q9Y2T1 843 aa18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms