RNA–Protein interactions for RNA: ENST00000549400.1

PTPRB-207, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

TSL 4

Gene PTPRB, Length 552 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-207ENST00000549400 PKDCCQ504Y2 493 aa5.32□□□□□ -1.56
PTPRB-207ENST00000549400 DIEXFQ68CQ4 756 aaKnown RBP5.32□□□□□ -1.56
PTPRB-207ENST00000549400 CERS3Q8IU89 383 aa5.32□□□□□ -1.56
PTPRB-207ENST00000549400 NKX2-3Q8TAU0 364 aa5.32□□□□□ -1.56
PTPRB-207ENST00000549400 ZNF592Q92610 1267 aa5.32□□□□□ -1.56
PTPRB-207ENST00000549400 NAP1L5Q96NT1 182 aaPredicted RBP5.32□□□□□ -1.56
PTPRB-207ENST00000549400 TSKSQ9UJT2 592 aa5.32□□□□□ -1.56
PTPRB-207ENST00000549400 MTMR7Q9Y216 660 aa5.32□□□□□ -1.56
PTPRB-207ENST00000549400 ARHGEF5Q12774 1597 aa5.32□□□□□ -1.56
PTPRB-207ENST00000549400 KDM5DQ9BY66 1539 aa5.32□□□□□ -1.56
PTPRB-207ENST00000549400 LMTK3Q96Q04 1460 aa5.32□□□□□ -1.56
PTPRB-207ENST00000549400 ADGBQ8N7X0 1667 aa5.31□□□□□ -1.56
PTPRB-207ENST00000549400 KIF14Q15058 1648 aa5.31□□□□□ -1.56
PTPRB-207ENST00000549400 A0A0U1RQG5 324 aaPredicted RBP5.31□□□□□ -1.56
PTPRB-207ENST00000549400 FAM177A1Q8N128 213 aaPredicted RBP5.31□□□□□ -1.56
PTPRB-207ENST00000549400 KCTD17Q8N5Z5 321 aa5.31□□□□□ -1.56
PTPRB-207ENST00000549400 DDX12PQ92771 950 aa5.31□□□□□ -1.56
PTPRB-207ENST00000549400 POLR3GLQ9BT43 218 aa5.31□□□□□ -1.56
PTPRB-207ENST00000549400 UHRF1BP1LA0JNW5 1464 aa5.31□□□□□ -1.56
PTPRB-207ENST00000549400 ATP10BO94823 1461 aa5.31□□□□□ -1.56
PTPRB-207ENST00000549400 KDM6BO15054 1643 aa5.3□□□□□ -1.56
PTPRB-207ENST00000549400 MAST1Q9Y2H9 1570 aa5.3□□□□□ -1.56
PTPRB-207ENST00000549400 RAD21O60216 631 aa5.3□□□□□ -1.56
PTPRB-207ENST00000549400 CLSTN1O94985 981 aa5.3□□□□□ -1.56
PTPRB-207ENST00000549400 SPRYD3Q8NCJ5 442 aa5.3□□□□□ -1.56
PTPRB-207ENST00000549400 YTHDC1Q96MU7 727 aaKnown RBP5.3□□□□□ -1.56
PTPRB-207ENST00000549400 CHD1O14646 1710 aa5.3□□□□□ -1.56
PTPRB-207ENST00000549400 CDC42BPAQ5VT25 1732 aa5.3□□□□□ -1.56
PTPRB-207ENST00000549400 CAMSAP2Q08AD1 1489 aa5.3□□□□□ -1.56
PTPRB-207ENST00000549400 PTPRGP23470 1445 aa5.3□□□□□ -1.56
PTPRB-207ENST00000549400 PRG4Q92954 1404 aaPredicted RBP5.3□□□□□ -1.56
PTPRB-207ENST00000549400 PREX2Q70Z35 1606 aa5.3□□□□□ -1.56
PTPRB-207ENST00000549400 ABCC2Q92887 1545 aa5.29□□□□□ -1.56
PTPRB-207ENST00000549400 POTECB2RU33 542 aa5.29□□□□□ -1.56
PTPRB-207ENST00000549400 MAP3K7O43318 606 aa5.29□□□□□ -1.56
PTPRB-207ENST00000549400 CHMP7Q8WUX9 453 aaPredicted RBP5.29□□□□□ -1.56
PTPRB-207ENST00000549400 NCOA1Q15788 1441 aa5.29□□□□□ -1.56
PTPRB-207ENST00000549400 ARAP3Q8WWN8 1544 aa5.28□□□□□ -1.56
PTPRB-207ENST00000549400 TEX14Q8IWB6 1497 aa5.28□□□□□ -1.56
PTPRB-207ENST00000549400 MBD5Q9P267 1494 aa5.28□□□□□ -1.56
PTPRB-207ENST00000549400 DPYSL4O14531 572 aa5.28□□□□□ -1.56
PTPRB-207ENST00000549400 DGAT1O75907 488 aa5.28□□□□□ -1.56
PTPRB-207ENST00000549400 COPS2P61201 443 aa5.28□□□□□ -1.56
PTPRB-207ENST00000549400 FAM50AQ14320 339 aaKnown RBP5.28□□□□□ -1.56
PTPRB-207ENST00000549400 TSR1Q2NL82 804 aaKnown RBP5.28□□□□□ -1.56
PTPRB-207ENST00000549400 PRDM16Q9HAZ2 1276 aa5.28□□□□□ -1.56
PTPRB-207ENST00000549400 CWC22Q9HCG8 908 aaKnown RBP5.28□□□□□ -1.56
PTPRB-207ENST00000549400 PNMA3Q9UL41 463 aa5.28□□□□□ -1.56
PTPRB-207ENST00000549400 PZPP20742 1482 aa5.27□□□□□ -1.57
PTPRB-207ENST00000549400 RPRD2Q5VT52 1461 aaKnown RBP5.27□□□□□ -1.57
PTPRB-207ENST00000549400 SLC19A1P41440 591 aa5.27□□□□□ -1.57
PTPRB-207ENST00000549400 APLP1P51693 650 aa5.27□□□□□ -1.57
PTPRB-207ENST00000549400 CAMK2BQ13554 666 aa5.27□□□□□ -1.57
PTPRB-207ENST00000549400 TREML4Q6UXN2 200 aa5.27□□□□□ -1.57
PTPRB-207ENST00000549400 CDCA7LQ96GN5 454 aa5.27□□□□□ -1.57
PTPRB-207ENST00000549400 TMUB1Q9BVT8 246 aa5.27□□□□□ -1.57
PTPRB-207ENST00000549400 MAGI2Q86UL8 1455 aa5.26□□□□□ -1.57
PTPRB-207ENST00000549400 PLXNC1O60486 1568 aa5.26□□□□□ -1.57
PTPRB-207ENST00000549400 PPP1R15AO75807 674 aaPredicted RBP5.26□□□□□ -1.57
PTPRB-207ENST00000549400 FOXD4L5Q5VV16 416 aaPredicted RBP5.26□□□□□ -1.57
PTPRB-207ENST00000549400 FOXD4L4Q8WXT5 416 aaPredicted RBP5.26□□□□□ -1.57
PTPRB-207ENST00000549400 TATDN2Q93075 761 aa5.26□□□□□ -1.57
PTPRB-207ENST00000549400 ANKRD30BQ9BXX2 1392 aa5.26□□□□□ -1.57
PTPRB-207ENST00000549400 CDC42BPBQ9Y5S2 1711 aa5.26□□□□□ -1.57
PTPRB-207ENST00000549400 SAMD9LQ8IVG5 1584 aa5.25□□□□□ -1.57
PTPRB-207ENST00000549400 KIAA1107Q9UPP5 1409 aa5.25□□□□□ -1.57
PTPRB-207ENST00000549400 FAM187AA6NFU0 413 aa5.25□□□□□ -1.57
PTPRB-207ENST00000549400 NBPF26B4DH59 902 aa5.25□□□□□ -1.57
PTPRB-207ENST00000549400 PRSS12P56730 875 aa5.25□□□□□ -1.57
PTPRB-207ENST00000549400 EN1Q05925 392 aaPredicted RBP5.25□□□□□ -1.57
PTPRB-207ENST00000549400 TRIM67Q6ZTA4 783 aa5.25□□□□□ -1.57
PTPRB-207ENST00000549400 TRAIPQ9BWF2 469 aa5.25□□□□□ -1.57
PTPRB-207ENST00000549400 CCDC141Q6ZP82 1450 aa5.25□□□□□ -1.57
PTPRB-207ENST00000549400 TTC37Q6PGP7 1564 aa5.25□□□□□ -1.57
PTPRB-207ENST00000549400 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP5.24□□□□□ -1.57
PTPRB-207ENST00000549400 PLEKHH2Q8IVE3 1493 aa5.24□□□□□ -1.57
PTPRB-207ENST00000549400 UNC13BO14795 1591 aa5.24□□□□□ -1.57
PTPRB-207ENST00000549400 ERCC6L2Q5T890 1561 aa5.24□□□□□ -1.57
PTPRB-207ENST00000549400 C9orf84Q5VXU9 1444 aa5.23□□□□□ -1.57
PTPRB-207ENST00000549400 ARHGEF12Q9NZN5 1544 aa5.23□□□□□ -1.57
PTPRB-207ENST00000549400 ARID3CA6NKF2 412 aa5.23□□□□□ -1.57
PTPRB-207ENST00000549400 ZPR1O75312 459 aa5.23□□□□□ -1.57
PTPRB-207ENST00000549400 ITGAEP38570 1179 aa5.23□□□□□ -1.57
PTPRB-207ENST00000549400 RBM25P49756 843 aaKnown RBP5.23□□□□□ -1.57
PTPRB-207ENST00000549400 NUDT18Q6ZVK8 323 aa5.23□□□□□ -1.57
PTPRB-207ENST00000549400 ZNF598Q86UK7 904 aaKnown RBP5.23□□□□□ -1.57
PTPRB-207ENST00000549400 CADPS2Q86UW7 1296 aa5.23□□□□□ -1.57
PTPRB-207ENST00000549400 TEX2Q8IWB9 1127 aa5.23□□□□□ -1.57
PTPRB-207ENST00000549400 CERKQ8TCT0 537 aa5.23□□□□□ -1.57
PTPRB-207ENST00000549400 PSMD1Q99460 953 aa5.23□□□□□ -1.57
PTPRB-207ENST00000549400 FAM198AQ9UFP1 575 aa5.23□□□□□ -1.57
PTPRB-207ENST00000549400 ATP1B4Q9UN42 357 aaPredicted RBP5.23□□□□□ -1.57
PTPRB-207ENST00000549400 ATP10AO60312 1499 aa5.23□□□□□ -1.57
PTPRB-207ENST00000549400 UHRF1BP1Q6BDS2 1440 aa5.23□□□□□ -1.57
PTPRB-207ENST00000549400 SPATA31E1Q6ZUB1 1445 aa5.23□□□□□ -1.57
PTPRB-207ENST00000549400 TONSLQ96HA7 1378 aa5.22□□□□□ -1.57
PTPRB-207ENST00000549400 ANKRD30AQ9BXX3 1397 aa5.22□□□□□ -1.57
PTPRB-207ENST00000549400 RNF223E7ERA6 249 aa5.22□□□□□ -1.57
PTPRB-207ENST00000549400 C3orf80F5H4A9 247 aa5.22□□□□□ -1.57
PTPRB-207ENST00000549400 SPRYD7Q5W111 196 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms