RNA–Protein interactions for RNA: ENST00000549400.1

PTPRB-207, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

TSL 4

Gene PTPRB, Length 552 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-207ENST00000549400 AEBP2Q6ZN18 517 aaPredicted RBP14.23□□□□□ -0.13
PTPRB-207ENST00000549400 CHIC1Q5VXU3 224 aa13.36□□□□□ -0.27
PTPRB-207ENST00000549400 SENP3Q9H4L4 574 aaPredicted RBP12.22□□□□□ -0.45
PTPRB-207ENST00000549400 PHF23Q9BUL5 403 aaPredicted RBP12.04□□□□□ -0.48
PTPRB-207ENST00000549400 FOXD1Q16676 465 aa11.42□□□□□ -0.58
PTPRB-207ENST00000549400 POTEDQ86YR6 584 aa11.1□□□□□ -0.63
PTPRB-207ENST00000549400 MSH5O43196 834 aa10.83□□□□□ -0.68
PTPRB-207ENST00000549400 PIAS4Q8N2W9 510 aaPredicted RBP10.63□□□□□ -0.71
PTPRB-207ENST00000549400 PLPPR3Q6T4P5 718 aa10.45□□□□□ -0.74
PTPRB-207ENST00000549400 PPP6R1Q9UPN7 881 aa10.43□□□□□ -0.74
PTPRB-207ENST00000549400 ADRA2BP18089 450 aa10.41□□□□□ -0.74
PTPRB-207ENST00000549400 MAPK8IP2Q13387 824 aaPredicted RBP9.67□□□□□ -0.86
PTPRB-207ENST00000549400 DMRT2Q9Y5R5 561 aa9.62□□□□□ -0.87
PTPRB-207ENST00000549400 SCAF1Q9H7N4 1312 aaKnown RBP9.56□□□□□ -0.88
PTPRB-207ENST00000549400 CACNB1Q02641 598 aaPredicted RBP9.54□□□□□ -0.88
PTPRB-207ENST00000549400 DCAF8L1A6NGE4 600 aa9.37□□□□□ -0.91
PTPRB-207ENST00000549400 RNF39Q9H2S5 420 aa9.18□□□□□ -0.94
PTPRB-207ENST00000549400 HOXD11P31277 338 aaPredicted RBP9.13□□□□□ -0.95
PTPRB-207ENST00000549400 PPP4R3CPQ6ZMV5 832 aa9.13□□□□□ -0.95
PTPRB-207ENST00000549400 C1QBPQ07021 282 aaKnown RBP9.05□□□□□ -0.96
PTPRB-207ENST00000549400 CNKSR2Q8WXI2 1034 aa9.02□□□□□ -0.97
PTPRB-207ENST00000549400 RNF216Q9NWF9 866 aaPredicted RBP9□□□□□ -0.97
PTPRB-207ENST00000549400 DNAJC5BQ9UF47 199 aa8.84□□□□□ -0.99
PTPRB-207ENST00000549400 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.79□□□□□ -1
PTPRB-207ENST00000549400 NCBP3Q53F19 620 aaKnown RBP8.71□□□□□ -1.02
PTPRB-207ENST00000549400 POTEHQ6S545 545 aa8.65□□□□□ -1.02
PTPRB-207ENST00000549400 CAPN15O75808 1086 aa8.55□□□□□ -1.04
PTPRB-207ENST00000549400 NPM3O75607 178 aaKnown RBP8.53□□□□□ -1.04
PTPRB-207ENST00000549400 DSG3P32926 999 aa8.51□□□□□ -1.05
PTPRB-207ENST00000549400 SPINK5Q9NQ38 1064 aaPredicted RBP8.5□□□□□ -1.05
PTPRB-207ENST00000549400 U3KPZ7 1027 aaPredicted RBP8.5□□□□□ -1.05
PTPRB-207ENST00000549400 TRHP20396 242 aaPredicted RBP8.35□□□□□ -1.07
PTPRB-207ENST00000549400 ABCB7O75027 752 aa8.31□□□□□ -1.08
PTPRB-207ENST00000549400 APLP2Q06481 763 aa8.29□□□□□ -1.08
PTPRB-207ENST00000549400 ZNF219Q9P2Y4 722 aaPredicted RBP8.27□□□□□ -1.09
PTPRB-207ENST00000549400 SLC4A2P04920 1241 aa8.21□□□□□ -1.1
PTPRB-207ENST00000549400 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.19□□□□□ -1.1
PTPRB-207ENST00000549400 HNRNPUL2Q1KMD3 747 aaKnown RBP8.19□□□□□ -1.1
PTPRB-207ENST00000549400 RBM42Q9BTD8 480 aaKnown RBP8.15□□□□□ -1.1
PTPRB-207ENST00000549400 SAMD1Q6SPF0 538 aaPredicted RBP8.12□□□□□ -1.11
PTPRB-207ENST00000549400 NISCHQ9Y2I1 1504 aa8.1□□□□□ -1.11
PTPRB-207ENST00000549400 KCNA4P22459 653 aa8.09□□□□□ -1.11
PTPRB-207ENST00000549400 CHRDL2Q6WN34 429 aa8.09□□□□□ -1.11
PTPRB-207ENST00000549400 POLA2Q14181 598 aa8.02□□□□□ -1.13
PTPRB-207ENST00000549400 SP7Q8TDD2 431 aaPredicted RBP7.96□□□□□ -1.14
PTPRB-207ENST00000549400 MYCNP04198 464 aaPredicted RBP7.91□□□□□ -1.14
PTPRB-207ENST00000549400 AKT1S1Q96B36 256 aa7.89□□□□□ -1.15
PTPRB-207ENST00000549400 HAX1O00165 279 aa7.84□□□□□ -1.15
PTPRB-207ENST00000549400 REM2Q8IYK8 340 aaPredicted RBP7.82□□□□□ -1.16
PTPRB-207ENST00000549400 PIP4P2Q8N4L2 257 aa7.82□□□□□ -1.16
PTPRB-207ENST00000549400 ZBTB12Q9Y330 459 aaPredicted RBP7.81□□□□□ -1.16
PTPRB-207ENST00000549400 OSCARQ8IYS5 282 aa7.75□□□□□ -1.17
PTPRB-207ENST00000549400 ATF5Q9Y2D1 282 aaPredicted RBP7.75□□□□□ -1.17
PTPRB-207ENST00000549400 PITPNM1O00562 1244 aa7.73□□□□□ -1.17
PTPRB-207ENST00000549400 FXR2P51116 673 aaKnown RBP eCLIP7.71□□□□□ -1.18
PTPRB-207ENST00000549400 FOXD4L1Q9NU39 408 aa7.66□□□□□ -1.18
PTPRB-207ENST00000549400 SLC24A1O60721 1099 aa7.65□□□□□ -1.18
PTPRB-207ENST00000549400 EVX2Q03828 476 aa7.64□□□□□ -1.19
PTPRB-207ENST00000549400 SLC4A1APQ9BWU0 796 aaKnown RBP7.6□□□□□ -1.19
PTPRB-207ENST00000549400 CLEC11AQ9Y240 323 aa7.57□□□□□ -1.2
PTPRB-207ENST00000549400 PRKAR2AP13861 404 aaKnown RBP7.56□□□□□ -1.2
PTPRB-207ENST00000549400 SPDYE2BA6NHP3 402 aa7.53□□□□□ -1.2
PTPRB-207ENST00000549400 SPDYE6P0CI01 402 aa7.53□□□□□ -1.2
PTPRB-207ENST00000549400 SPDYE2Q495Y8 402 aa7.53□□□□□ -1.2
PTPRB-207ENST00000549400 FBLN2P98095 1184 aa7.52□□□□□ -1.21
PTPRB-207ENST00000549400 SPDYE1Q8NFV5 336 aaPredicted RBP7.5□□□□□ -1.21
PTPRB-207ENST00000549400 LHX8Q68G74 356 aa7.49□□□□□ -1.21
PTPRB-207ENST00000549400 C19orf67A6NJJ6 358 aa7.48□□□□□ -1.21
PTPRB-207ENST00000549400 GABBR2O75899 941 aa7.48□□□□□ -1.21
PTPRB-207ENST00000549400 ZNF692Q9BU19 519 aaPredicted RBP7.44□□□□□ -1.22
PTPRB-207ENST00000549400 ATXN8OSP0DMR3 200 aa7.43□□□□□ -1.22
PTPRB-207ENST00000549400 CHADLQ6NUI6 762 aa7.42□□□□□ -1.22
PTPRB-207ENST00000549400 ZBTB22O15209 634 aa7.39□□□□□ -1.23
PTPRB-207ENST00000549400 PRR29P0C7W0 189 aa7.37□□□□□ -1.23
PTPRB-207ENST00000549400 SSUH2Q9Y2M2 353 aa7.36□□□□□ -1.23
PTPRB-207ENST00000549400 MKRN4PQ13434 485 aaPredicted RBP7.35□□□□□ -1.23
PTPRB-207ENST00000549400 PLSCR2Q9NRY7 297 aa7.33□□□□□ -1.24
PTPRB-207ENST00000549400 PABPN1Q86U42 306 aaKnown RBP eCLIP7.31□□□□□ -1.24
PTPRB-207ENST00000549400 CD44P16070 742 aaKnown RBP7.3□□□□□ -1.24
PTPRB-207ENST00000549400 POTEIP0CG38 1075 aa7.28□□□□□ -1.24
PTPRB-207ENST00000549400 DCBLD2Q96PD2 775 aa7.26□□□□□ -1.25
PTPRB-207ENST00000549400 CLCN6P51797 869 aa7.24□□□□□ -1.25
PTPRB-207ENST00000549400 FARP1Q9Y4F1 1045 aaPredicted RBP7.24□□□□□ -1.25
PTPRB-207ENST00000549400 ZRANB1Q9UGI0 708 aa7.17□□□□□ -1.26
PTPRB-207ENST00000549400 ZNF579Q8NAF0 562 aaKnown RBP7.12□□□□□ -1.27
PTPRB-207ENST00000549400 GALR2O43603 387 aaPredicted RBP7.09□□□□□ -1.27
PTPRB-207ENST00000549400 MYT1Q01538 1121 aa7.08□□□□□ -1.28
PTPRB-207ENST00000549400 OTUD5Q96G74 571 aa7.08□□□□□ -1.28
PTPRB-207ENST00000549400 POTEMA6NI47 508 aa7.07□□□□□ -1.28
PTPRB-207ENST00000549400 PAK3O75914 559 aaPredicted RBP7.07□□□□□ -1.28
PTPRB-207ENST00000549400 CREBZFQ9NS37 354 aa7.05□□□□□ -1.28
PTPRB-207ENST00000549400 CCDC180Q9P1Z9 1646 aa7.05□□□□□ -1.28
PTPRB-207ENST00000549400 POTEB2H3BUK9 544 aa7.04□□□□□ -1.28
PTPRB-207ENST00000549400 STAG3Q9UJ98 1225 aa7.04□□□□□ -1.28
PTPRB-207ENST00000549400 POTEGQ6S5H5 508 aa7.03□□□□□ -1.28
PTPRB-207ENST00000549400 PELP1Q8IZL8 1130 aaKnown RBP7.02□□□□□ -1.29
PTPRB-207ENST00000549400 DAXXQ9UER7 740 aaPredicted RBP7.02□□□□□ -1.29
PTPRB-207ENST00000549400 PHF12Q96QT6 1004 aa7.01□□□□□ -1.29
PTPRB-207ENST00000549400 NPM1P06748 294 aaKnown RBP eCLIP6.97□□□□□ -1.29
PTPRB-207ENST00000549400 PCDH10Q9P2E7 1040 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms