RNA–Protein interactions for RNA: ENST00000540963.1

CHFR-218, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 2

Gene CHFR, Length 875 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-218ENST00000540963 FAM98CQ17RN3 349 aaKnown RBP39.48■■■■□ 3.91
CHFR-218ENST00000540963 HIRIP3Q9BW71 556 aaPredicted RBP39.48■■■■□ 3.91
CHFR-218ENST00000540963 RAB3GAP2Q9H2M9 1393 aa39.46■■■■□ 3.91
CHFR-218ENST00000540963 MINK1Q8N4C8 1332 aaPredicted RBP39.46■■■■□ 3.91
CHFR-218ENST00000540963 RGPD1P0DJD0 1748 aa39.45■■■■□ 3.91
CHFR-218ENST00000540963 SPATA31A5Q5VU36 1347 aa39.43■■■■□ 3.9
CHFR-218ENST00000540963 SPATA31A7Q8IWB4 1347 aa39.43■■■■□ 3.9
CHFR-218ENST00000540963 ITSN1Q15811 1721 aa39.43■■■■□ 3.9
CHFR-218ENST00000540963 NGDNQ8NEJ9 315 aaKnown RBP39.41■■■■□ 3.9
CHFR-218ENST00000540963 THSD7AQ9UPZ6 1657 aa39.4■■■■□ 3.9
CHFR-218ENST00000540963 DCAF11Q8TEB1 546 aa39.39■■■■□ 3.9
CHFR-218ENST00000540963 KDM2AQ9Y2K7 1162 aa39.36■■■■□ 3.89
CHFR-218ENST00000540963 ARHGEF28Q8N1W1 1705 aaKnown RBP39.35■■■■□ 3.89
CHFR-218ENST00000540963 DISP2A7MBM2 1401 aa39.35■■■■□ 3.89
CHFR-218ENST00000540963 PRDM11Q9NQV5 511 aa39.35■■■■□ 3.89
CHFR-218ENST00000540963 PAK3O75914 559 aaPredicted RBP39.34■■■■□ 3.89
CHFR-218ENST00000540963 ATP7BP35670 1465 aa39.32■■■■□ 3.89
CHFR-218ENST00000540963 HRCP23327 699 aa39.31■■■■□ 3.88
CHFR-218ENST00000540963 TNS1Q9HBL0 1735 aaKnown RBP39.28■■■■□ 3.88
CHFR-218ENST00000540963 PSDA5PKW4 1024 aaPredicted RBP39.28■■■■□ 3.88
CHFR-218ENST00000540963 EN1Q05925 392 aaPredicted RBP39.28■■■■□ 3.88
CHFR-218ENST00000540963 PHRF1Q9P1Y6 1649 aaKnown RBP39.28■■■■□ 3.88
CHFR-218ENST00000540963 SPATA31A1Q5TZJ5 1347 aa39.27■■■■□ 3.88
CHFR-218ENST00000540963 NUDT16Q96DE0 195 aaKnown RBP39.27■■■■□ 3.88
CHFR-218ENST00000540963 KIAA0232Q92628 1395 aa39.25■■■■□ 3.87
CHFR-218ENST00000540963 FAM182BQ5T319 152 aa39.23■■■■□ 3.87
CHFR-218ENST00000540963 POLR3AO14802 1390 aaPredicted RBP39.21■■■■□ 3.87
CHFR-218ENST00000540963 FAM196AQ6ZSG2 479 aa39.2■■■■□ 3.87
CHFR-218ENST00000540963 TOPAZ1Q8N9V7 1692 aa39.19■■■■□ 3.86
CHFR-218ENST00000540963 CDK19Q9BWU1 502 aa39.16■■■■□ 3.86
CHFR-218ENST00000540963 CCDC61Q9Y6R9 512 aa39.16■■■■□ 3.86
CHFR-218ENST00000540963 KIAA1210Q9ULL0 1709 aa39.16■■■■□ 3.86
CHFR-218ENST00000540963 PARD3Q8TEW0 1356 aa39.16■■■■□ 3.86
CHFR-218ENST00000540963 CHRNA2Q15822 529 aa39.15■■■■□ 3.86
CHFR-218ENST00000540963 R3HDM1Q15032 1099 aaKnown RBP39.13■■■■□ 3.85
CHFR-218ENST00000540963 BARGINQ6ZT62 677 aa39.13■■■■□ 3.85
CHFR-218ENST00000540963 STRN4Q9NRL3 753 aa39.13■■■■□ 3.85
CHFR-218ENST00000540963 PLEKHG3A1L390 1219 aa39.12■■■■□ 3.85
CHFR-218ENST00000540963 ZC3H6P61129 1189 aaKnown RBP39.12■■■■□ 3.85
CHFR-218ENST00000540963 NBPF8Q3BBV2 869 aa39.12■■■■□ 3.85
CHFR-218ENST00000540963 CAMKK2Q96RR4 588 aa39.12■■■■□ 3.85
CHFR-218ENST00000540963 ACEP12821 1306 aa39.12■■■■□ 3.85
CHFR-218ENST00000540963 EZH2Q15910 746 aaKnown RBP39.11■■■■□ 3.85
CHFR-218ENST00000540963 SSH2Q76I76 1423 aa39.1■■■■□ 3.85
CHFR-218ENST00000540963 NRKQ7Z2Y5 1582 aa39.09■■■■□ 3.85
CHFR-218ENST00000540963 TRIM37O94972 964 aa39.09■■■■□ 3.85
CHFR-218ENST00000540963 CPDO75976 1380 aa39.08■■■■□ 3.85
CHFR-218ENST00000540963 EVA1CP58658 441 aa39.07■■■■□ 3.85
CHFR-218ENST00000540963 NUTM2GQ5VZR2 741 aa39.05■■■■□ 3.84
CHFR-218ENST00000540963 LMO7Q8WWI1 1683 aa39.05■■■■□ 3.84
CHFR-218ENST00000540963 CAMTA1Q9Y6Y1 1673 aa39.04■■■■□ 3.84
CHFR-218ENST00000540963 ABTB2Q8N961 1025 aa39.04■■■■□ 3.84
CHFR-218ENST00000540963 USP19O94966 1318 aa39.04■■■■□ 3.84
CHFR-218ENST00000540963 APBA3O96018 575 aa39.03■■■■□ 3.84
CHFR-218ENST00000540963 PDE3BQ13370 1112 aa39.03■■■■□ 3.84
CHFR-218ENST00000540963 RREB1Q92766 1687 aa39.01■■■■□ 3.84
CHFR-218ENST00000540963 USP35Q9P2H5 1018 aa39.01■■■■□ 3.84
CHFR-218ENST00000540963 THRAP3Q9Y2W1 955 aaKnown RBP39.01■■■■□ 3.84
CHFR-218ENST00000540963 BRD4O60885 1362 aaPredicted RBP39■■■■□ 3.83
CHFR-218ENST00000540963 TCP11L2Q8N4U5 519 aa39■■■■□ 3.83
CHFR-218ENST00000540963 NLRP13Q86W25 1043 aa38.98■■■■□ 3.83
CHFR-218ENST00000540963 LARP1Q6PKG0 1096 aaKnown RBP38.97■■■■□ 3.83
CHFR-218ENST00000540963 C11orf95C9JLR9 678 aaPredicted RBP38.96■■■■□ 3.83
CHFR-218ENST00000540963 NUP188Q5SRE5 1749 aa38.94■■■■□ 3.82
CHFR-218ENST00000540963 PARP4Q9UKK3 1724 aaKnown RBP38.94■■■■□ 3.82
CHFR-218ENST00000540963 GCP02774 474 aa38.92■■■■□ 3.82
CHFR-218ENST00000540963 PPIP5K1Q6PFW1 1433 aa38.91■■■■□ 3.82
CHFR-218ENST00000540963 NBPF14Q5TI25 921 aa38.89■■■■□ 3.82
CHFR-218ENST00000540963 COL5A2P05997 1499 aaPredicted RBP38.89■■■■□ 3.82
CHFR-218ENST00000540963 SRPK2P78362 688 aaKnown RBP38.88■■■■□ 3.81
CHFR-218ENST00000540963 NBPF1Q3BBV0 1214 aa38.87■■■■□ 3.81
CHFR-218ENST00000540963 CENPJQ9HC77 1338 aaPredicted RBP38.87■■■■□ 3.81
CHFR-218ENST00000540963 CRB1P82279 1406 aa38.85■■■■□ 3.81
CHFR-218ENST00000540963 AATKQ6ZMQ8 1374 aa38.81■■■■□ 3.8
CHFR-218ENST00000540963 QRICH2Q9H0J4 1663 aa38.81■■■■□ 3.8
CHFR-218ENST00000540963 RGPD3A6NKT7 1758 aaPredicted RBP38.8■■■■□ 3.8
CHFR-218ENST00000540963 RGPD4Q7Z3J3 1758 aa38.8■■■■□ 3.8
CHFR-218ENST00000540963 USP6P35125 1406 aa38.8■■■■□ 3.8
CHFR-218ENST00000540963 SLIT3O75094 1523 aa38.79■■■■□ 3.8
CHFR-218ENST00000540963 CABP2Q9NPB3 220 aa38.79■■■■□ 3.8
CHFR-218ENST00000540963 PEAK1Q9H792 1746 aa38.79■■■■□ 3.8
CHFR-218ENST00000540963 OVOS2A0A0G2JMS6 1433 aa38.78■■■■□ 3.8
CHFR-218ENST00000540963 OVOS2A0A0J9YW53 1432 aa38.78■■■■□ 3.8
CHFR-218ENST00000540963 OVOS2Q6IE36 1432 aa38.78■■■■□ 3.8
CHFR-218ENST00000540963 SBF2Q86WG5 1849 aa38.75■■■■□ 3.79
CHFR-218ENST00000540963 NLRP6P59044 892 aa38.74■■■■□ 3.79
CHFR-218ENST00000540963 CABP1Q9NZU7 370 aa38.73■■■■□ 3.79
CHFR-218ENST00000540963 LRRC37A3O60309 1634 aa38.72■■■■□ 3.79
CHFR-218ENST00000540963 PLSCR1O15162 318 aa38.71■■■■□ 3.79
CHFR-218ENST00000540963 SPON1Q9HCB6 807 aa38.71■■■■□ 3.79
CHFR-218ENST00000540963 COL18A1P39060 1754 aa38.71■■■■□ 3.79
CHFR-218ENST00000540963 DDB1Q16531 1140 aa38.68■■■■□ 3.78
CHFR-218ENST00000540963 PIK3C2AO00443 1686 aa38.68■■■■□ 3.78
CHFR-218ENST00000540963 WNK3Q9BYP7 1800 aa38.67■■■■□ 3.78
CHFR-218ENST00000540963 KCNQ2O43526 872 aa38.66■■■■□ 3.78
CHFR-218ENST00000540963 CDCA7Q9BWT1 371 aaPredicted RBP38.66■■■■□ 3.78
CHFR-218ENST00000540963 TOM1L2Q6ZVM7 507 aa38.65■■■■□ 3.78
CHFR-218ENST00000540963 EVC2Q86UK5 1308 aa38.64■■■■□ 3.78
CHFR-218ENST00000540963 BCL9O00512 1426 aa38.64■■■■□ 3.78
CHFR-218ENST00000540963 WDR17Q8IZU2 1322 aa38.63■■■■□ 3.78
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms