RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 SENP3Q9H4L4 574 aaPredicted RBP10.38□□□□□ -0.75
YBX3-208ENST00000540447 NOLC1Q14978 699 aaKnown RBP eCLIP10.38□□□□□ -0.75
YBX3-208ENST00000540447 PDZRN3Q9UPQ7 1066 aa10.38□□□□□ -0.75
YBX3-208ENST00000540447 ARID4AP29374 1257 aaPredicted RBP10.38□□□□□ -0.75
YBX3-208ENST00000540447 MAP2K1Q02750 393 aaPredicted RBP10.38□□□□□ -0.75
YBX3-208ENST00000540447 GABPB1Q06547 395 aaPredicted RBP10.38□□□□□ -0.75
YBX3-208ENST00000540447 TRIM29Q14134 588 aa10.38□□□□□ -0.75
YBX3-208ENST00000540447 NAA25Q14CX7 972 aa10.38□□□□□ -0.75
YBX3-208ENST00000540447 MCM3P25205 808 aa10.38□□□□□ -0.75
YBX3-208ENST00000540447 SYNE3Q6ZMZ3 975 aa10.37□□□□□ -0.75
YBX3-208ENST00000540447 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.37□□□□□ -0.75
YBX3-208ENST00000540447 WDR33Q9C0J8 1336 aaKnown RBP10.37□□□□□ -0.75
YBX3-208ENST00000540447 CASQ1P31415 396 aa10.37□□□□□ -0.75
YBX3-208ENST00000540447 NEK4P51957 841 aa10.37□□□□□ -0.75
YBX3-208ENST00000540447 NUP133Q8WUM0 1156 aa10.37□□□□□ -0.75
YBX3-208ENST00000540447 CBFA2T2O43439 604 aa10.37□□□□□ -0.75
YBX3-208ENST00000540447 MAP2K2P36507 400 aa10.37□□□□□ -0.75
YBX3-208ENST00000540447 USP25Q9UHP3 1055 aa10.37□□□□□ -0.75
YBX3-208ENST00000540447 ZKSCAN5Q9Y2L8 839 aa10.37□□□□□ -0.75
YBX3-208ENST00000540447 KRBA2Q6ZNG9 492 aa10.37□□□□□ -0.75
YBX3-208ENST00000540447 RRP7AQ9Y3A4 280 aaKnown RBP10.37□□□□□ -0.75
YBX3-208ENST00000540447 POTEB2H3BUK9 544 aa10.36□□□□□ -0.75
YBX3-208ENST00000540447 HSP90AB2PQ58FF8 381 aa10.36□□□□□ -0.75
YBX3-208ENST00000540447 CEP135Q66GS9 1140 aa10.36□□□□□ -0.75
YBX3-208ENST00000540447 PPFIBP1Q86W92 1011 aa10.36□□□□□ -0.75
YBX3-208ENST00000540447 CAPN2P17655 700 aa10.36□□□□□ -0.75
YBX3-208ENST00000540447 CPLX2Q6PUV4 134 aaKnown RBP10.36□□□□□ -0.75
YBX3-208ENST00000540447 ESF1Q9H501 851 aaKnown RBP10.36□□□□□ -0.75
YBX3-208ENST00000540447 SUDS3Q9H7L9 328 aaPredicted RBP10.36□□□□□ -0.75
YBX3-208ENST00000540447 HSPA4P34932 840 aa10.36□□□□□ -0.75
YBX3-208ENST00000540447 FOSBP53539 338 aa10.36□□□□□ -0.75
YBX3-208ENST00000540447 PANK1Q8TE04 598 aa10.36□□□□□ -0.75
YBX3-208ENST00000540447 RSRC1Q96IZ7 334 aaKnown RBP10.36□□□□□ -0.75
YBX3-208ENST00000540447 AKAP17AQ02040 695 aaKnown RBP10.36□□□□□ -0.75
YBX3-208ENST00000540447 SPATA24Q86W54 205 aa10.36□□□□□ -0.75
YBX3-208ENST00000540447 ZNF397Q8NF99 534 aaPredicted RBP10.35□□□□□ -0.75
YBX3-208ENST00000540447 ZBTB12Q9Y330 459 aaPredicted RBP10.35□□□□□ -0.75
YBX3-208ENST00000540447 ZSCAN12O43309 604 aa10.35□□□□□ -0.75
YBX3-208ENST00000540447 CCAR1Q8IX12 1150 aaKnown RBP10.35□□□□□ -0.75
YBX3-208ENST00000540447 NUP62CLQ9H1M0 184 aa10.35□□□□□ -0.75
YBX3-208ENST00000540447 SWAP70Q9UH65 585 aa10.35□□□□□ -0.75
YBX3-208ENST00000540447 A0A0G2JS52 829 aa10.35□□□□□ -0.75
YBX3-208ENST00000540447 NEBLO76041 1014 aa10.35□□□□□ -0.75
YBX3-208ENST00000540447 CCDC148Q8NFR7 591 aa10.35□□□□□ -0.75
YBX3-208ENST00000540447 L3MBTL2Q969R5 705 aa10.35□□□□□ -0.75
YBX3-208ENST00000540447 CPLX1O14810 134 aa10.34□□□□□ -0.75
YBX3-208ENST00000540447 ADCY5O95622 1261 aa10.34□□□□□ -0.75
YBX3-208ENST00000540447 TERF1P54274 439 aa10.34□□□□□ -0.75
YBX3-208ENST00000540447 DMTNQ08495 405 aa10.34□□□□□ -0.75
YBX3-208ENST00000540447 HS1BP3Q53T59 392 aa10.34□□□□□ -0.75
YBX3-208ENST00000540447 RPAINQ86UA6 219 aa10.34□□□□□ -0.75
YBX3-208ENST00000540447 TRMT1Q9NXH9 659 aaKnown RBP10.34□□□□□ -0.75
YBX3-208ENST00000540447 FOXD1Q16676 465 aa10.34□□□□□ -0.75
YBX3-208ENST00000540447 AP1ARQ63HQ0 302 aa10.34□□□□□ -0.75
YBX3-208ENST00000540447 NEMFO60524 1076 aa10.34□□□□□ -0.75
YBX3-208ENST00000540447 BRPF1P55201 1214 aaPredicted RBP10.34□□□□□ -0.75
YBX3-208ENST00000540447 TNPO1Q92973 898 aaKnown RBP10.34□□□□□ -0.75
YBX3-208ENST00000540447 PDCP20941 246 aa10.34□□□□□ -0.75
YBX3-208ENST00000540447 SRRTQ9BXP5 876 aaKnown RBP10.34□□□□□ -0.75
YBX3-208ENST00000540447 SFPQP23246 707 aaKnown RBP eCLIP10.34□□□□□ -0.75
YBX3-208ENST00000540447 SEPT7Q16181 437 aaKnown RBP10.34□□□□□ -0.75
YBX3-208ENST00000540447 FMNL3Q8IVF7 1028 aa10.34□□□□□ -0.75
YBX3-208ENST00000540447 VPS8Q8N3P4 1428 aa10.34□□□□□ -0.75
YBX3-208ENST00000540447 SMG6Q86US8 1419 aaKnown RBP10.33□□□□□ -0.76
YBX3-208ENST00000540447 CLIP2Q9UDT6 1046 aa10.33□□□□□ -0.76
YBX3-208ENST00000540447 ATP6V1AP38606 617 aa10.33□□□□□ -0.76
YBX3-208ENST00000540447 SEPT6Q14141 434 aa10.33□□□□□ -0.76
YBX3-208ENST00000540447 UTP14CQ5TAP6 766 aaKnown RBP10.33□□□□□ -0.76
YBX3-208ENST00000540447 CLNS1AP54105 237 aaKnown RBP10.33□□□□□ -0.76
YBX3-208ENST00000540447 MAP3K11Q16584 847 aa10.33□□□□□ -0.76
YBX3-208ENST00000540447 CCDC183Q5T5S1 534 aa10.33□□□□□ -0.76
YBX3-208ENST00000540447 KLHL34Q8N239 644 aa10.33□□□□□ -0.76
YBX3-208ENST00000540447 APAF1O14727 1248 aa10.33□□□□□ -0.76
YBX3-208ENST00000540447 MARCH6O60337 910 aa10.33□□□□□ -0.76
YBX3-208ENST00000540447 CEP57L1Q8IYX8 460 aa10.33□□□□□ -0.76
YBX3-208ENST00000540447 ZNHIT6Q9NWK9 470 aaKnown RBP10.33□□□□□ -0.76
YBX3-208ENST00000540447 PPM1EQ8WY54 764 aa10.32□□□□□ -0.76
YBX3-208ENST00000540447 BCCIPQ9P287 314 aaKnown RBP eCLIP10.32□□□□□ -0.76
YBX3-208ENST00000540447 CCDC175P0C221 793 aa10.32□□□□□ -0.76
YBX3-208ENST00000540447 ARHGAP29Q52LW3 1261 aa10.32□□□□□ -0.76
YBX3-208ENST00000540447 EBAG9O00559 213 aa10.32□□□□□ -0.76
YBX3-208ENST00000540447 KRT85P78386 507 aa10.32□□□□□ -0.76
YBX3-208ENST00000540447 ARFGAP3Q9NP61 516 aa10.32□□□□□ -0.76
YBX3-208ENST00000540447 FHAD1B1AJZ9 1412 aa10.32□□□□□ -0.76
YBX3-208ENST00000540447 UVSSAQ2YD98 709 aa10.32□□□□□ -0.76
YBX3-208ENST00000540447 UPF3BQ9BZI7 483 aaKnown RBP10.31□□□□□ -0.76
YBX3-208ENST00000540447 ANKRD62A6NC57 917 aa10.31□□□□□ -0.76
YBX3-208ENST00000540447 SNW1Q13573 536 aaKnown RBP10.31□□□□□ -0.76
YBX3-208ENST00000540447 OTUD6BQ8N6M0 293 aa10.31□□□□□ -0.76
YBX3-208ENST00000540447 SCLT1Q96NL6 688 aa10.31□□□□□ -0.76
YBX3-208ENST00000540447 TBC1D2Q9BYX2 928 aa10.31□□□□□ -0.76
YBX3-208ENST00000540447 ANKRD18AQ8IVF6 992 aa10.31□□□□□ -0.76
YBX3-208ENST00000540447 NGEFQ8N5V2 710 aa10.31□□□□□ -0.76
YBX3-208ENST00000540447 CNTLNQ9NXG0 1405 aa10.31□□□□□ -0.76
YBX3-208ENST00000540447 RNF168Q8IYW5 571 aaPredicted RBP10.31□□□□□ -0.76
YBX3-208ENST00000540447 CNPY4Q8N129 248 aa10.31□□□□□ -0.76
YBX3-208ENST00000540447 ZNF830Q96NB3 372 aaPredicted RBP10.31□□□□□ -0.76
YBX3-208ENST00000540447 CEP83Q9Y592 693 aa10.31□□□□□ -0.76
YBX3-208ENST00000540447 V9GYY5 206 aaPredicted RBP10.31□□□□□ -0.76
YBX3-208ENST00000540447 U2AF2P26368 475 aaKnown RBP eCLIP10.31□□□□□ -0.762e-8■■□□□ 14.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms