RNA–Protein interactions for RNA: ENST00000538654.5

SNHG1-209, Transcript of small nucleolar RNA host gene 1, human

TSL 2

Gene SNHG1, Length 2,768 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-209	ENST00000538654	CALD1	Q05682	793 aa	Known RBP	11.28	□□□□□ -0.6
SNHG1-209	ENST00000538654	CCDC27	Q2M243	656 aa		11.28	□□□□□ -0.6
SNHG1-209	ENST00000538654	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	11.28	□□□□□ -0.6
SNHG1-209	ENST00000538654	WDR63	Q8IWG1	891 aa		11.28	□□□□□ -0.6
SNHG1-209	ENST00000538654	MRC2	Q9UBG0	1479 aa		11.28	□□□□□ -0.6
SNHG1-209	ENST00000538654	TTC37	Q6PGP7	1564 aa		11.28	□□□□□ -0.6
SNHG1-209	ENST00000538654	SHROOM2	Q13796	1616 aa		11.28	□□□□□ -0.6
SNHG1-209	ENST00000538654	SMC5	Q8IY18	1101 aa		11.28	□□□□□ -0.6
SNHG1-209	ENST00000538654	DMRT2	Q9Y5R5	561 aa		11.28	□□□□□ -0.6
SNHG1-209	ENST00000538654	SPHKAP	Q2M3C7	1700 aa		11.28	□□□□□ -0.6
SNHG1-209	ENST00000538654	ATP10B	O94823	1461 aa		11.28	□□□□□ -0.6
SNHG1-209	ENST00000538654	ZSCAN30	Q86W11	494 aa		11.28	□□□□□ -0.6
SNHG1-209	ENST00000538654	PPP1R9B	Q96SB3	815 aa		11.28	□□□□□ -0.6
SNHG1-209	ENST00000538654	CDC42BPB	Q9Y5S2	1711 aa		11.27	□□□□□ -0.61
SNHG1-209	ENST00000538654	KIAA1211	Q6ZU35	1233 aa		11.27	□□□□□ -0.61
SNHG1-209	ENST00000538654	KANK1	Q14678	1352 aa		11.27	□□□□□ -0.61
SNHG1-209	ENST00000538654	IBTK	Q9P2D0	1353 aa	Predicted RBP	11.27	□□□□□ -0.61
SNHG1-209	ENST00000538654	CEP152	O94986	1710 aa		11.27	□□□□□ -0.61
SNHG1-209	ENST00000538654	OFD1	O75665	1012 aa		11.27	□□□□□ -0.61
SNHG1-209	ENST00000538654	MVP	Q14764	893 aa	Known RBP	11.27	□□□□□ -0.61
SNHG1-209	ENST00000538654	KIAA1210	Q9ULL0	1709 aa		11.26	□□□□□ -0.61
SNHG1-209	ENST00000538654	GOLGA6L22	H0YM25	854 aa		11.26	□□□□□ -0.61
SNHG1-209	ENST00000538654	CLSTN1	O94985	981 aa		11.26	□□□□□ -0.61
SNHG1-209	ENST00000538654	MSN	P26038	577 aa	Known RBP	11.26	□□□□□ -0.61
SNHG1-209	ENST00000538654	RAB3GAP1	Q15042	981 aa		11.26	□□□□□ -0.61
SNHG1-209	ENST00000538654	TNPO1	Q92973	898 aa	Known RBP	11.26	□□□□□ -0.61
SNHG1-209	ENST00000538654	RUNDC1	Q96C34	613 aa		11.26	□□□□□ -0.61
SNHG1-209	ENST00000538654	RLBP1	P12271	317 aa		11.25	□□□□□ -0.61
SNHG1-209	ENST00000538654	HDAC1	Q13547	482 aa	Predicted RBP	11.25	□□□□□ -0.61
SNHG1-209	ENST00000538654	ZC3H15	Q8WU90	426 aa	Known RBP	11.25	□□□□□ -0.61
SNHG1-209	ENST00000538654	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	11.25	□□□□□ -0.61
SNHG1-209	ENST00000538654	CT47B1	P0C2W7	299 aa	Predicted RBP	11.25	□□□□□ -0.61
SNHG1-209	ENST00000538654	HS1BP3	Q53T59	392 aa		11.25	□□□□□ -0.61
SNHG1-209	ENST00000538654	HSP90AB1	P08238	724 aa	Known RBP	11.24	□□□□□ -0.61
SNHG1-209	ENST00000538654	IQSEC2	Q5JU85	1478 aa		11.24	□□□□□ -0.61
SNHG1-209	ENST00000538654	SMARCA5	O60264	1052 aa	Predicted RBP	11.24	□□□□□ -0.61
SNHG1-209	ENST00000538654	NASP	P49321	788 aa	Predicted RBP	11.24	□□□□□ -0.61
SNHG1-209	ENST00000538654	IRF5	Q13568	498 aa		11.24	□□□□□ -0.61
SNHG1-209	ENST00000538654	ZKSCAN2	Q63HK3	967 aa		11.24	□□□□□ -0.61
SNHG1-209	ENST00000538654	MTERF4	Q7Z6M4	381 aa	Known RBP	11.24	□□□□□ -0.61
SNHG1-209	ENST00000538654	FTSJ3	Q8IY81	847 aa	Known RBP	11.24	□□□□□ -0.61
SNHG1-209	ENST00000538654	GAS2L3	Q86XJ1	694 aa		11.23	□□□□□ -0.61
SNHG1-209	ENST00000538654	SHPRH	Q149N8	1683 aa		11.23	□□□□□ -0.61
SNHG1-209	ENST00000538654	DZIP1L	Q8IYY4	767 aa	Known RBP	11.22	□□□□□ -0.61
SNHG1-209	ENST00000538654	SYCP2	Q9BX26	1530 aa		11.22	□□□□□ -0.61
SNHG1-209	ENST00000538654	CLEC17A	Q6ZS10	378 aa		11.22	□□□□□ -0.61
SNHG1-209	ENST00000538654	DDX19B	Q9UMR2	479 aa		11.22	□□□□□ -0.61
SNHG1-209	ENST00000538654	KLHL40	Q2TBA0	621 aa		11.21	□□□□□ -0.62
SNHG1-209	ENST00000538654	TCP11L2	Q8N4U5	519 aa		11.21	□□□□□ -0.62
SNHG1-209	ENST00000538654	TRPM2	O94759	1503 aa		11.21	□□□□□ -0.62
SNHG1-209	ENST00000538654	WDR70	Q9NW82	654 aa		11.2	□□□□□ -0.62
SNHG1-209	ENST00000538654	KIF16B	Q96L93	1317 aa		11.2	□□□□□ -0.62
SNHG1-209	ENST00000538654	RETREG2	Q8NC44	543 aa		11.2	□□□□□ -0.62
SNHG1-209	ENST00000538654	JPH4	Q96JJ6	628 aa		11.2	□□□□□ -0.62
SNHG1-209	ENST00000538654	ARHGAP31	Q2M1Z3	1444 aa		11.19	□□□□□ -0.62
SNHG1-209	ENST00000538654	ERVK-7	P63135	1459 aa		11.19	□□□□□ -0.62
SNHG1-209	ENST00000538654	NCL	P19338	710 aa	Known RBP	11.19	□□□□□ -0.62
SNHG1-209	ENST00000538654	RBM10	P98175	930 aa	Known RBP	11.19	□□□□□ -0.62
SNHG1-209	ENST00000538654	CSPP1	Q1MSJ5	1256 aa		11.19	□□□□□ -0.62
SNHG1-209	ENST00000538654	TNN	Q9UQP3	1299 aa		11.19	□□□□□ -0.62
SNHG1-209	ENST00000538654	ADGRL1	O94910	1474 aa		11.18	□□□□□ -0.62
SNHG1-209	ENST00000538654	NKX1-1	Q15270	411 aa	Predicted RBP	11.18	□□□□□ -0.62
SNHG1-209	ENST00000538654	BCL2L13	Q9BXK5	485 aa		11.18	□□□□□ -0.62
SNHG1-209	ENST00000538654	ARHGAP5	Q13017	1502 aa		11.18	□□□□□ -0.62
SNHG1-209	ENST00000538654	NEURL4	Q96JN8	1562 aa		11.18	□□□□□ -0.62
SNHG1-209	ENST00000538654		K7ELQ4	463 aa	Predicted RBP	11.18	□□□□□ -0.62
SNHG1-209	ENST00000538654	ZNF500	O60304	480 aa	Predicted RBP	11.18	□□□□□ -0.62
SNHG1-209	ENST00000538654	CHMP7	Q8WUX9	453 aa	Predicted RBP	11.18	□□□□□ -0.62
SNHG1-209	ENST00000538654	FBXW7	Q969H0	707 aa		11.18	□□□□□ -0.62
SNHG1-209	ENST00000538654	CFAP53	Q96M91	514 aa		11.18	□□□□□ -0.62
SNHG1-209	ENST00000538654	CARD14	Q9BXL6	1004 aa		11.18	□□□□□ -0.62
SNHG1-209	ENST00000538654	MCM5	P33992	734 aa		11.17	□□□□□ -0.62
SNHG1-209	ENST00000538654	ZNF445	P59923	1031 aa		11.17	□□□□□ -0.62
SNHG1-209	ENST00000538654	MORC1	Q86VD1	984 aa		11.17	□□□□□ -0.62
SNHG1-209	ENST00000538654	NOL7	Q9UMY1	257 aa	Known RBP	11.17	□□□□□ -0.62
SNHG1-209	ENST00000538654	DDX49	Q9Y6V7	483 aa	Known RBP	11.17	□□□□□ -0.62
SNHG1-209	ENST00000538654	RIPK4	P57078	832 aa		11.16	□□□□□ -0.62
SNHG1-209	ENST00000538654	RRP7A	Q9Y3A4	280 aa	Known RBP	11.16	□□□□□ -0.62
SNHG1-209	ENST00000538654	SBNO2	Q9Y2G9	1366 aa		11.16	□□□□□ -0.62
SNHG1-209	ENST00000538654	NUCB1	Q02818	461 aa		11.16	□□□□□ -0.62
SNHG1-209	ENST00000538654	BMP2KL	Q5H9B9	411 aa		11.16	□□□□□ -0.62
SNHG1-209	ENST00000538654	SMAP1	Q8IYB5	467 aa	Predicted RBP	11.16	□□□□□ -0.62
SNHG1-209	ENST00000538654	MYO3A	Q8NEV4	1616 aa		11.16	□□□□□ -0.62
SNHG1-209	ENST00000538654	DYNC1I1	O14576	645 aa		11.16	□□□□□ -0.62
SNHG1-209	ENST00000538654	KCNV2	Q8TDN2	545 aa		11.16	□□□□□ -0.62
SNHG1-209	ENST00000538654	PRDM4	Q9UKN5	801 aa		11.16	□□□□□ -0.62
SNHG1-209	ENST00000538654	CFAP74	Q9C0B2	1584 aa		11.15	□□□□□ -0.62
SNHG1-209	ENST00000538654	USP32	Q8NFA0	1604 aa		11.15	□□□□□ -0.62
SNHG1-209	ENST00000538654	PTPRT	O14522	1441 aa		11.15	□□□□□ -0.62
SNHG1-209	ENST00000538654	ERCC6	Q03468	1493 aa		11.15	□□□□□ -0.62
SNHG1-209	ENST00000538654	RERE	Q9P2R6	1566 aa		11.15	□□□□□ -0.62
SNHG1-209	ENST00000538654	ITPRIP	Q8IWB1	547 aa		11.15	□□□□□ -0.63
SNHG1-209	ENST00000538654	SMC4	Q9NTJ3	1288 aa		11.15	□□□□□ -0.63
SNHG1-209	ENST00000538654	R3HCC1	Q9Y3T6	440 aa	Known RBP	11.15	□□□□□ -0.63
SNHG1-209	ENST00000538654	ZNF518A	Q6AHZ1	1483 aa		11.14	□□□□□ -0.63
SNHG1-209	ENST00000538654	CLTCL1	P53675	1640 aa		11.14	□□□□□ -0.63
SNHG1-209	ENST00000538654	ATF7IP	Q6VMQ6	1270 aa		11.14	□□□□□ -0.63
SNHG1-209	ENST00000538654	FAM43B	Q6ZT52	329 aa	Predicted RBP	11.14	□□□□□ -0.63
SNHG1-209	ENST00000538654	FAM13B	Q9NYF5	915 aa		11.14	□□□□□ -0.63
SNHG1-209	ENST00000538654	ADGRB2	O60241	1585 aa		11.14	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 83.2 ms