RNA–Protein interactions for RNA: ENST00000513873.1

CLDND1-228, Transcript of claudin domain containing 1, humanhuman

TSL 3

Gene CLDND1, Length 538 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1-228ENST00000513873 SPDYE5A6NIY4 337 aa8.52□□□□□ -1.05
CLDND1-228ENST00000513873 LORP23490 312 aaPredicted RBP8.52□□□□□ -1.05
CLDND1-228ENST00000513873 KCTD17Q8N5Z5 321 aa8.52□□□□□ -1.05
CLDND1-228ENST00000513873 HLA-CQ95604 372 aa8.52□□□□□ -1.05
CLDND1-228ENST00000513873 J3QL48 77 aa8.51□□□□□ -1.05
CLDND1-228ENST00000513873 MTMR2Q13614 643 aa8.51□□□□□ -1.05
CLDND1-228ENST00000513873 ZBTB3Q9H5J0 574 aa8.51□□□□□ -1.05
CLDND1-228ENST00000513873 PRPF38BQ5VTL8 546 aaKnown RBP8.5□□□□□ -1.05
CLDND1-228ENST00000513873 BRICD5Q6PL45 260 aa8.5□□□□□ -1.05
CLDND1-228ENST00000513873 HPS1Q92902 700 aa8.5□□□□□ -1.05
CLDND1-228ENST00000513873 MRGPRX2Q96LB1 330 aa8.5□□□□□ -1.05
CLDND1-228ENST00000513873 USB1Q9BQ65 265 aaKnown RBP8.5□□□□□ -1.05
CLDND1-228ENST00000513873 H3BM21 787 aa8.49□□□□□ -1.05
CLDND1-228ENST00000513873 KCNMA1Q12791 1236 aa8.49□□□□□ -1.05
CLDND1-228ENST00000513873 TMEM132AQ24JP5 1023 aa8.49□□□□□ -1.05
CLDND1-228ENST00000513873 TUSC1Q2TAM9 212 aa8.49□□□□□ -1.05
CLDND1-228ENST00000513873 RETREG3Q86VR2 466 aa8.49□□□□□ -1.05
CLDND1-228ENST00000513873 LIMD1Q9UGP4 676 aa8.49□□□□□ -1.05
CLDND1-228ENST00000513873 VEGFBP49765 207 aa8.48□□□□□ -1.05
CLDND1-228ENST00000513873 PCDHGC3Q9UN70 934 aa8.48□□□□□ -1.05
CLDND1-228ENST00000513873 PCDHB15Q9Y5E8 787 aa8.48□□□□□ -1.05
CLDND1-228ENST00000513873 TRIM32Q13049 653 aa8.47□□□□□ -1.05
CLDND1-228ENST00000513873 RNF19BQ6ZMZ0 732 aa8.47□□□□□ -1.05
CLDND1-228ENST00000513873 TMEM151AQ8N4L1 468 aa8.47□□□□□ -1.05
CLDND1-228ENST00000513873 PROCA1Q8NCQ7 364 aaPredicted RBP8.47□□□□□ -1.05
CLDND1-228ENST00000513873 HRCP23327 699 aa8.46□□□□□ -1.06
CLDND1-228ENST00000513873 TSC1Q92574 1164 aa8.46□□□□□ -1.06
CLDND1-228ENST00000513873 SYMPKQ92797 1274 aaKnown RBP8.46□□□□□ -1.06
CLDND1-228ENST00000513873 THAP11Q96EK4 314 aa8.46□□□□□ -1.06
CLDND1-228ENST00000513873 MSS51Q4VC12 460 aa8.45□□□□□ -1.06
CLDND1-228ENST00000513873 LILRB3O75022 631 aa8.44□□□□□ -1.06
CLDND1-228ENST00000513873 FAM160A2Q8N612 972 aaPredicted RBP8.44□□□□□ -1.06
CLDND1-228ENST00000513873 HELBQ8NG08 1087 aaPredicted RBP8.44□□□□□ -1.06
CLDND1-228ENST00000513873 PRR7Q8TB68 274 aa8.44□□□□□ -1.06
CLDND1-228ENST00000513873 CABLES1Q8TDN4 633 aa8.44□□□□□ -1.06
CLDND1-228ENST00000513873 RNF225M0QZC1 329 aaPredicted RBP8.43□□□□□ -1.06
CLDND1-228ENST00000513873 GDF11O95390 407 aa8.43□□□□□ -1.06
CLDND1-228ENST00000513873 QPCTQ16769 361 aa8.43□□□□□ -1.06
CLDND1-228ENST00000513873 ERBB4Q15303 1308 aa8.43□□□□□ -1.06
CLDND1-228ENST00000513873 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.42□□□□□ -1.06
CLDND1-228ENST00000513873 UNC13AQ9UPW8 1703 aa8.42□□□□□ -1.06
CLDND1-228ENST00000513873 NACADO15069 1562 aa8.41□□□□□ -1.06
CLDND1-228ENST00000513873 JUNDP17535 347 aa8.41□□□□□ -1.06
CLDND1-228ENST00000513873 RTL5Q5HYW3 569 aaPredicted RBP8.41□□□□□ -1.06
CLDND1-228ENST00000513873 PRDM9Q9NQV7 894 aa8.41□□□□□ -1.06
CLDND1-228ENST00000513873 ALDH1A1P00352 501 aa8.4□□□□□ -1.06
CLDND1-228ENST00000513873 TMEM259Q4ZIN3 620 aa8.4□□□□□ -1.06
CLDND1-228ENST00000513873 DESI1Q6ICB0 168 aa8.4□□□□□ -1.06
CLDND1-228ENST00000513873 AP1G2O75843 785 aa8.39□□□□□ -1.07
CLDND1-228ENST00000513873 PPP2R2DQ66LE6 453 aa8.39□□□□□ -1.07
CLDND1-228ENST00000513873 CCDC24Q8N4L8 307 aa8.39□□□□□ -1.07
CLDND1-228ENST00000513873 CFAP99D6REC4 459 aa8.38□□□□□ -1.07
CLDND1-228ENST00000513873 CAPN5O15484 640 aaPredicted RBP8.38□□□□□ -1.07
CLDND1-228ENST00000513873 BMP1P13497 986 aa8.38□□□□□ -1.07
CLDND1-228ENST00000513873 RFC5P40937 340 aa8.38□□□□□ -1.07
CLDND1-228ENST00000513873 MMP16P51512 607 aa8.38□□□□□ -1.07
CLDND1-228ENST00000513873 RC3H1Q5TC82 1133 aaKnown RBP8.38□□□□□ -1.07
CLDND1-228ENST00000513873 DXOO77932 396 aaKnown RBP8.37□□□□□ -1.07
CLDND1-228ENST00000513873 RASSF7Q02833 373 aa8.37□□□□□ -1.07
CLDND1-228ENST00000513873 WASF2Q9Y6W5 498 aa8.37□□□□□ -1.07
CLDND1-228ENST00000513873 NUDT12Q9BQG2 462 aa8.36□□□□□ -1.07
CLDND1-228ENST00000513873 CECR2Q9BXF3 1484 aa8.35□□□□□ -1.07
CLDND1-228ENST00000513873 CCNYL3P0C7X3 344 aa8.35□□□□□ -1.07
CLDND1-228ENST00000513873 CTHP32929 405 aa8.35□□□□□ -1.07
CLDND1-228ENST00000513873 WNT7BP56706 349 aa8.35□□□□□ -1.07
CLDND1-228ENST00000513873 PTPRNQ16849 979 aa8.35□□□□□ -1.07
CLDND1-228ENST00000513873 LYPD8Q6UX82 237 aa8.35□□□□□ -1.07
CLDND1-228ENST00000513873 IGHA1P01876 353 aa8.34□□□□□ -1.07
CLDND1-228ENST00000513873 TRIM46Q7Z4K8 759 aa8.34□□□□□ -1.07
CLDND1-228ENST00000513873 BICRAQ9NZM4 1560 aa8.34□□□□□ -1.07
CLDND1-228ENST00000513873 APBB1O00213 710 aa8.33□□□□□ -1.08
CLDND1-228ENST00000513873 CTDSPL2Q05D32 466 aa8.33□□□□□ -1.08
CLDND1-228ENST00000513873 PNMA1Q8ND90 353 aa8.33□□□□□ -1.08
CLDND1-228ENST00000513873 GSK3AP49840 483 aa8.32□□□□□ -1.08
CLDND1-228ENST00000513873 BANK1Q8NDB2 785 aa8.32□□□□□ -1.08
CLDND1-228ENST00000513873 VSIG8P0DPA2 414 aa8.31□□□□□ -1.08
CLDND1-228ENST00000513873 SCARF1Q14162 830 aa8.31□□□□□ -1.08
CLDND1-228ENST00000513873 ZFP42Q96MM3 310 aa8.31□□□□□ -1.08
CLDND1-228ENST00000513873 PRM3Q9NNZ6 103 aa8.31□□□□□ -1.08
CLDND1-228ENST00000513873 EVA1BQ9NVM1 165 aa8.31□□□□□ -1.08
CLDND1-228ENST00000513873 CC2D2AQ9P2K1 1620 aa8.31□□□□□ -1.08
CLDND1-228ENST00000513873 USP17L8P0C7I0 530 aa8.3□□□□□ -1.08
CLDND1-228ENST00000513873 KCNH2Q12809 1159 aa8.3□□□□□ -1.08
CLDND1-228ENST00000513873 GPAT2Q6NUI2 795 aa8.3□□□□□ -1.08
CLDND1-228ENST00000513873 ARMC2Q8NEN0 867 aa8.29□□□□□ -1.08
CLDND1-228ENST00000513873 PER1O15534 1290 aaPredicted RBP8.28□□□□□ -1.08
CLDND1-228ENST00000513873 FBXO31Q5XUX0 539 aaPredicted RBP8.28□□□□□ -1.08
CLDND1-228ENST00000513873 EHBP1Q8NDI1 1231 aa8.28□□□□□ -1.08
CLDND1-228ENST00000513873 XP32Q5T750 250 aa8.27□□□□□ -1.09
CLDND1-228ENST00000513873 LRRN4Q8WUT4 740 aa8.27□□□□□ -1.09
CLDND1-228ENST00000513873 SKOR1P84550 965 aa8.26□□□□□ -1.09
CLDND1-228ENST00000513873 FOXK2Q01167 660 aa8.26□□□□□ -1.09
CLDND1-228ENST00000513873 FLIIQ13045 1269 aa8.26□□□□□ -1.09
CLDND1-228ENST00000513873 UNC93B1Q9H1C4 597 aa8.26□□□□□ -1.09
CLDND1-228ENST00000513873 DNMT3AQ9Y6K1 912 aaPredicted RBP8.26□□□□□ -1.09
CLDND1-228ENST00000513873 MAP10Q9P2G4 905 aa8.25□□□□□ -1.09
CLDND1-228ENST00000513873 F12P00748 615 aaPredicted RBP8.24□□□□□ -1.09
CLDND1-228ENST00000513873 ADAMTS8Q9UP79 889 aa8.24□□□□□ -1.09
CLDND1-228ENST00000513873 AGERQ15109 404 aa8.23□□□□□ -1.09
CLDND1-228ENST00000513873 NR6A1Q15406 480 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms