RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 CAMKK2Q96RR4 588 aa16.39■□□□□ 0.21
DDX41-216ENST00000513562 GPRASP1Q5JY77 1395 aa16.38■□□□□ 0.21
DDX41-216ENST00000513562 PARD3Q8TEW0 1356 aa16.38■□□□□ 0.21
DDX41-216ENST00000513562 ALS2Q96Q42 1657 aa16.38■□□□□ 0.21
DDX41-216ENST00000513562 ACIN1Q9UKV3 1341 aaKnown RBP16.38■□□□□ 0.21
DDX41-216ENST00000513562 MPHOSPH9Q99550 1183 aa16.37■□□□□ 0.21
DDX41-216ENST00000513562 POGKQ9P215 609 aa16.36■□□□□ 0.21
DDX41-216ENST00000513562 TRIM37O94972 964 aa16.35■□□□□ 0.21
DDX41-216ENST00000513562 FAM196AQ6ZSG2 479 aa16.35■□□□□ 0.21
DDX41-216ENST00000513562 PRDM11Q9NQV5 511 aa16.35■□□□□ 0.21
DDX41-216ENST00000513562 SPATA31A1Q5TZJ5 1347 aa16.35■□□□□ 0.21
DDX41-216ENST00000513562 PRR36Q9H6K5 1346 aa16.35■□□□□ 0.21
DDX41-216ENST00000513562 EIF3AQ14152 1382 aaKnown RBP16.35■□□□□ 0.21
DDX41-216ENST00000513562 TULP4Q9NRJ4 1543 aa16.34■□□□□ 0.21
DDX41-216ENST00000513562 CRYBG1Q9Y4K1 1723 aa16.33■□□□□ 0.21
DDX41-216ENST00000513562 YY1P25490 414 aa16.33■□□□□ 0.2
DDX41-216ENST00000513562 ADGRB1O14514 1584 aa16.32■□□□□ 0.2
DDX41-216ENST00000513562 APBA3O96018 575 aa16.32■□□□□ 0.2
DDX41-216ENST00000513562 KIAA0232Q92628 1395 aa16.32■□□□□ 0.2
DDX41-216ENST00000513562 HIRIP3Q9BW71 556 aaPredicted RBP16.32■□□□□ 0.2
DDX41-216ENST00000513562 WASLO00401 505 aaPredicted RBP16.29■□□□□ 0.2
DDX41-216ENST00000513562 PAK3O75914 559 aaPredicted RBP16.29■□□□□ 0.2
DDX41-216ENST00000513562 NGDNQ8NEJ9 315 aaKnown RBP16.29■□□□□ 0.2
DDX41-216ENST00000513562 RREB1Q92766 1687 aa16.29■□□□□ 0.2
DDX41-216ENST00000513562 MINK1Q8N4C8 1332 aaPredicted RBP16.28■□□□□ 0.2
DDX41-216ENST00000513562 CHRNA2Q15822 529 aa16.28■□□□□ 0.2
DDX41-216ENST00000513562 BARGINQ6ZT62 677 aa16.28■□□□□ 0.2
DDX41-216ENST00000513562 STRN4Q9NRL3 753 aa16.28■□□□□ 0.2
DDX41-216ENST00000513562 TRAK1Q9UPV9 953 aa16.28■□□□□ 0.2
DDX41-216ENST00000513562 ATP7BP35670 1465 aa16.27■□□□□ 0.19
DDX41-216ENST00000513562 SSH2Q76I76 1423 aa16.27■□□□□ 0.19
DDX41-216ENST00000513562 NBPF8Q3BBV2 869 aa16.26■□□□□ 0.19
DDX41-216ENST00000513562 NBPF14Q5TI25 921 aa16.26■□□□□ 0.19
DDX41-216ENST00000513562 NINLQ9Y2I6 1382 aa16.26■□□□□ 0.19
DDX41-216ENST00000513562 NUP188Q5SRE5 1749 aa16.25■□□□□ 0.19
DDX41-216ENST00000513562 PDE3BQ13370 1112 aa16.25■□□□□ 0.19
DDX41-216ENST00000513562 PHRF1Q9P1Y6 1649 aaKnown RBP16.24■□□□□ 0.19
DDX41-216ENST00000513562 SPON1Q9HCB6 807 aa16.24■□□□□ 0.19
DDX41-216ENST00000513562 USP35Q9P2H5 1018 aa16.24■□□□□ 0.19
DDX41-216ENST00000513562 ZC3H6P61129 1189 aaKnown RBP16.23■□□□□ 0.19
DDX41-216ENST00000513562 PPP1R1BQ9UD71 204 aaPredicted RBP16.23■□□□□ 0.19
DDX41-216ENST00000513562 KCNQ2O43526 872 aa16.22■□□□□ 0.19
DDX41-216ENST00000513562 LARP1Q6PKG0 1096 aaKnown RBP16.21■□□□□ 0.19
DDX41-216ENST00000513562 TCP11L2Q8N4U5 519 aa16.21■□□□□ 0.19
DDX41-216ENST00000513562 NUDT16Q96DE0 195 aaKnown RBP16.21■□□□□ 0.19
DDX41-216ENST00000513562 EVA1CP58658 441 aa16.2■□□□□ 0.18
DDX41-216ENST00000513562 POLR3AO14802 1390 aaPredicted RBP16.2■□□□□ 0.18
DDX41-216ENST00000513562 CPDO75976 1380 aa16.2■□□□□ 0.18
DDX41-216ENST00000513562 NRKQ7Z2Y5 1582 aa16.2■□□□□ 0.18
DDX41-216ENST00000513562 CAMTA1Q9Y6Y1 1673 aa16.2■□□□□ 0.18
DDX41-216ENST00000513562 DCAF8L1A6NGE4 600 aa16.19■□□□□ 0.18
DDX41-216ENST00000513562 NUTM2GQ5VZR2 741 aa16.19■□□□□ 0.18
DDX41-216ENST00000513562 THRAP3Q9Y2W1 955 aaKnown RBP16.19■□□□□ 0.18
DDX41-216ENST00000513562 LMO7Q8WWI1 1683 aa16.18■□□□□ 0.18
DDX41-216ENST00000513562 USP19O94966 1318 aa16.18■□□□□ 0.18
DDX41-216ENST00000513562 ITSN1Q15811 1721 aa16.17■□□□□ 0.18
DDX41-216ENST00000513562 C11orf95C9JLR9 678 aaPredicted RBP16.17■□□□□ 0.18
DDX41-216ENST00000513562 OVOS2A0A0G2JMS6 1433 aa16.16■□□□□ 0.18
DDX41-216ENST00000513562 OVOS2A0A0J9YW53 1432 aa16.16■□□□□ 0.18
DDX41-216ENST00000513562 OVOS2Q6IE36 1432 aa16.16■□□□□ 0.18
DDX41-216ENST00000513562 ACEP12821 1306 aa16.16■□□□□ 0.18
DDX41-216ENST00000513562 COL5A2P05997 1499 aaPredicted RBP16.15■□□□□ 0.18
DDX41-216ENST00000513562 UTRNP46939 3433 aa16.15■□□□□ 0.18
DDX41-216ENST00000513562 PARP4Q9UKK3 1724 aaKnown RBP16.14■□□□□ 0.17
DDX41-216ENST00000513562 PLSCR1O15162 318 aa16.14■□□□□ 0.17
DDX41-216ENST00000513562 STAC3Q96MF2 364 aa16.14■□□□□ 0.17
DDX41-216ENST00000513562 ANO8Q9HCE9 1232 aaPredicted RBP16.14■□□□□ 0.17
DDX41-216ENST00000513562 PLEKHG3A1L390 1219 aa16.13■□□□□ 0.17
DDX41-216ENST00000513562 ABTB2Q8N961 1025 aa16.13■□□□□ 0.17
DDX41-216ENST00000513562 DCAF11Q8TEB1 546 aa16.13■□□□□ 0.17
DDX41-216ENST00000513562 CDK19Q9BWU1 502 aa16.13■□□□□ 0.17
DDX41-216ENST00000513562 KDM2AQ9Y2K7 1162 aa16.13■□□□□ 0.17
DDX41-216ENST00000513562 CCDC61Q9Y6R9 512 aa16.13■□□□□ 0.17
DDX41-216ENST00000513562 TOPAZ1Q8N9V7 1692 aa16.13■□□□□ 0.17
DDX41-216ENST00000513562 RGPD3A6NKT7 1758 aaPredicted RBP16.13■□□□□ 0.17
DDX41-216ENST00000513562 RGPD4Q7Z3J3 1758 aa16.13■□□□□ 0.17
DDX41-216ENST00000513562 CRB1P82279 1406 aa16.12■□□□□ 0.17
DDX41-216ENST00000513562 ARHGEF28Q8N1W1 1705 aaKnown RBP16.12■□□□□ 0.17
DDX41-216ENST00000513562 PEAK1Q9H792 1746 aa16.12■□□□□ 0.17
DDX41-216ENST00000513562 CASZ1Q86V15 1759 aa16.11■□□□□ 0.17
DDX41-216ENST00000513562 GCP02774 474 aa16.11■□□□□ 0.17
DDX41-216ENST00000513562 NLRP13Q86W25 1043 aa16.09■□□□□ 0.17
DDX41-216ENST00000513562 ZNF784Q8NCA9 323 aaPredicted RBP16.09■□□□□ 0.17
DDX41-216ENST00000513562 BCL11BQ9C0K0 894 aaPredicted RBP16.09■□□□□ 0.17
DDX41-216ENST00000513562 PDGFDQ9GZP0 370 aaPredicted RBP16.09■□□□□ 0.17
DDX41-216ENST00000513562 LRRC37A3O60309 1634 aa16.08■□□□□ 0.17
DDX41-216ENST00000513562 PTGER2P43116 358 aa16.08■□□□□ 0.16
DDX41-216ENST00000513562 BCL9O00512 1426 aa16.08■□□□□ 0.16
DDX41-216ENST00000513562 ZBTB7AO95365 584 aa16.07■□□□□ 0.16
DDX41-216ENST00000513562 DDB1Q16531 1140 aa16.07■□□□□ 0.16
DDX41-216ENST00000513562 PTF1AQ7RTS3 328 aa16.07■□□□□ 0.16
DDX41-216ENST00000513562 PROM2Q8N271 834 aa16.07■□□□□ 0.16
DDX41-216ENST00000513562 AATKQ6ZMQ8 1374 aa16.07■□□□□ 0.16
DDX41-216ENST00000513562 BRD4O60885 1362 aaPredicted RBP16.06■□□□□ 0.16
DDX41-216ENST00000513562 RAB3GAP2Q9H2M9 1393 aa16.06■□□□□ 0.16
DDX41-216ENST00000513562 MYOM1P52179 1685 aa16.05■□□□□ 0.16
DDX41-216ENST00000513562 PPIP5K1Q6PFW1 1433 aa16.04■□□□□ 0.16
DDX41-216ENST00000513562 SLIT3O75094 1523 aa16.04■□□□□ 0.16
DDX41-216ENST00000513562 MARCH10Q8NA82 808 aaPredicted RBP16.03■□□□□ 0.16
DDX41-216ENST00000513562 TOM1L2Q6ZVM7 507 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms