RNA–Protein interactions for RNA: ENST00000505589.1

NEDD9-210, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 2

Gene NEDD9, Length 571 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-210ENST00000505589 PDE3BQ13370 1112 aa14.57□□□□□ -0.08
NEDD9-210ENST00000505589 R3HDM1Q15032 1099 aaKnown RBP14.57□□□□□ -0.08
NEDD9-210ENST00000505589 PARD3Q8TEW0 1356 aa14.57□□□□□ -0.08
NEDD9-210ENST00000505589 TRAK1Q9UPV9 953 aa14.56□□□□□ -0.08
NEDD9-210ENST00000505589 DISP2A7MBM2 1401 aa14.56□□□□□ -0.08
NEDD9-210ENST00000505589 DLC1Q96QB1 1528 aa14.56□□□□□ -0.08
NEDD9-210ENST00000505589 IFT172Q9UG01 1749 aa14.55□□□□□ -0.08
NEDD9-210ENST00000505589 APBA3O96018 575 aa14.55□□□□□ -0.08
NEDD9-210ENST00000505589 PLCH1Q4KWH8 1693 aa14.55□□□□□ -0.08
NEDD9-210ENST00000505589 EZH2Q15910 746 aaKnown RBP14.54□□□□□ -0.08
NEDD9-210ENST00000505589 COL14A1Q05707 1796 aaKnown RBP14.54□□□□□ -0.08
NEDD9-210ENST00000505589 RGPD8O14715 1765 aaPredicted RBP14.53□□□□□ -0.08
NEDD9-210ENST00000505589 SPATA31A1Q5TZJ5 1347 aa14.53□□□□□ -0.08
NEDD9-210ENST00000505589 POTEDQ86YR6 584 aa14.53□□□□□ -0.08
NEDD9-210ENST00000505589 CAMKK2Q96RR4 588 aa14.53□□□□□ -0.08
NEDD9-210ENST00000505589 HIRIP3Q9BW71 556 aaPredicted RBP14.53□□□□□ -0.08
NEDD9-210ENST00000505589 MINK1Q8N4C8 1332 aaPredicted RBP14.52□□□□□ -0.08
NEDD9-210ENST00000505589 MSH5O43196 834 aa14.52□□□□□ -0.09
NEDD9-210ENST00000505589 TRIM37O94972 964 aa14.52□□□□□ -0.09
NEDD9-210ENST00000505589 BARGINQ6ZT62 677 aa14.52□□□□□ -0.09
NEDD9-210ENST00000505589 THRAP3Q9Y2W1 955 aaKnown RBP14.52□□□□□ -0.09
NEDD9-210ENST00000505589 RGPD1P0DJD0 1748 aa14.52□□□□□ -0.09
NEDD9-210ENST00000505589 FAM182BQ5T319 152 aa14.51□□□□□ -0.09
NEDD9-210ENST00000505589 STRN4Q9NRL3 753 aa14.51□□□□□ -0.09
NEDD9-210ENST00000505589 DCAF11Q8TEB1 546 aa14.5□□□□□ -0.09
NEDD9-210ENST00000505589 NUDT16Q96DE0 195 aaKnown RBP14.5□□□□□ -0.09
NEDD9-210ENST00000505589 KDM2AQ9Y2K7 1162 aa14.5□□□□□ -0.09
NEDD9-210ENST00000505589 PPP1R1BQ9UD71 204 aaPredicted RBP14.49□□□□□ -0.09
NEDD9-210ENST00000505589 CCDC61Q9Y6R9 512 aa14.49□□□□□ -0.09
NEDD9-210ENST00000505589 ADGRB2O60241 1585 aa14.48□□□□□ -0.09
NEDD9-210ENST00000505589 YY1P25490 414 aa14.48□□□□□ -0.09
NEDD9-210ENST00000505589 TCP11L2Q8N4U5 519 aa14.48□□□□□ -0.09
NEDD9-210ENST00000505589 SPON1Q9HCB6 807 aa14.48□□□□□ -0.09
NEDD9-210ENST00000505589 KIAA0232Q92628 1395 aa14.47□□□□□ -0.09
NEDD9-210ENST00000505589 PRR36Q9H6K5 1346 aa14.47□□□□□ -0.09
NEDD9-210ENST00000505589 TULP4Q9NRJ4 1543 aa14.47□□□□□ -0.09
NEDD9-210ENST00000505589 ZC3H6P61129 1189 aaKnown RBP14.47□□□□□ -0.09
NEDD9-210ENST00000505589 NLRP13Q86W25 1043 aa14.47□□□□□ -0.09
NEDD9-210ENST00000505589 ABTB2Q8N961 1025 aa14.47□□□□□ -0.09
NEDD9-210ENST00000505589 USP35Q9P2H5 1018 aa14.47□□□□□ -0.09
NEDD9-210ENST00000505589 ABCA3Q99758 1704 aa14.46□□□□□ -0.09
NEDD9-210ENST00000505589 CHRNA2Q15822 529 aa14.46□□□□□ -0.09
NEDD9-210ENST00000505589 NRAPQ86VF7 1730 aa14.46□□□□□ -0.1
NEDD9-210ENST00000505589 CDK19Q9BWU1 502 aa14.45□□□□□ -0.1
NEDD9-210ENST00000505589 ALS2Q96Q42 1657 aa14.45□□□□□ -0.1
NEDD9-210ENST00000505589 ATP7BP35670 1465 aa14.44□□□□□ -0.1
NEDD9-210ENST00000505589 TRPM3Q9HCF6 1732 aaPredicted RBP14.44□□□□□ -0.1
NEDD9-210ENST00000505589 PLEKHG3A1L390 1219 aa14.44□□□□□ -0.1
NEDD9-210ENST00000505589 KCNQ2O43526 872 aa14.44□□□□□ -0.1
NEDD9-210ENST00000505589 PIAS4Q8N2W9 510 aaPredicted RBP14.43□□□□□ -0.1
NEDD9-210ENST00000505589 BRD4O60885 1362 aaPredicted RBP14.43□□□□□ -0.1
NEDD9-210ENST00000505589 ACEP12821 1306 aa14.42□□□□□ -0.1
NEDD9-210ENST00000505589 PLSCR1O15162 318 aa14.42□□□□□ -0.1
NEDD9-210ENST00000505589 ADGRB1O14514 1584 aa14.42□□□□□ -0.1
NEDD9-210ENST00000505589 THSD7AQ9UPZ6 1657 aa14.42□□□□□ -0.1
NEDD9-210ENST00000505589 GCP02774 474 aa14.41□□□□□ -0.1
NEDD9-210ENST00000505589 CPDO75976 1380 aa14.41□□□□□ -0.1
NEDD9-210ENST00000505589 POLR3AO14802 1390 aaPredicted RBP14.4□□□□□ -0.1
NEDD9-210ENST00000505589 NUTM2GQ5VZR2 741 aa14.4□□□□□ -0.1
NEDD9-210ENST00000505589 LARP1Q6PKG0 1096 aaKnown RBP14.4□□□□□ -0.1
NEDD9-210ENST00000505589 CDCA7Q9BWT1 371 aaPredicted RBP14.4□□□□□ -0.1
NEDD9-210ENST00000505589 SSH2Q76I76 1423 aa14.4□□□□□ -0.1
NEDD9-210ENST00000505589 NINLQ9Y2I6 1382 aa14.39□□□□□ -0.11
NEDD9-210ENST00000505589 ITSN1Q15811 1721 aa14.38□□□□□ -0.11
NEDD9-210ENST00000505589 SRPK2P78362 688 aaKnown RBP14.37□□□□□ -0.11
NEDD9-210ENST00000505589 DDB1Q16531 1140 aa14.37□□□□□ -0.11
NEDD9-210ENST00000505589 BCL11BQ9C0K0 894 aaPredicted RBP14.37□□□□□ -0.11
NEDD9-210ENST00000505589 TNS1Q9HBL0 1735 aaKnown RBP14.37□□□□□ -0.11
NEDD9-210ENST00000505589 RAB3GAP2Q9H2M9 1393 aa14.35□□□□□ -0.11
NEDD9-210ENST00000505589 TOM1L2Q6ZVM7 507 aa14.35□□□□□ -0.11
NEDD9-210ENST00000505589 USP19O94966 1318 aa14.35□□□□□ -0.11
NEDD9-210ENST00000505589 OVOS2A0A0G2JMS6 1433 aa14.34□□□□□ -0.11
NEDD9-210ENST00000505589 OVOS2A0A0J9YW53 1432 aa14.34□□□□□ -0.11
NEDD9-210ENST00000505589 CRB1P82279 1406 aa14.34□□□□□ -0.11
NEDD9-210ENST00000505589 OVOS2Q6IE36 1432 aa14.34□□□□□ -0.11
NEDD9-210ENST00000505589 NLRP6P59044 892 aa14.34□□□□□ -0.11
NEDD9-210ENST00000505589 ZNF692Q9BU19 519 aaPredicted RBP14.34□□□□□ -0.11
NEDD9-210ENST00000505589 CRYBG1Q9Y4K1 1723 aa14.33□□□□□ -0.12
NEDD9-210ENST00000505589 CAMTA1Q9Y6Y1 1673 aa14.33□□□□□ -0.12
NEDD9-210ENST00000505589 KCNH5Q8NCM2 988 aa14.32□□□□□ -0.12
NEDD9-210ENST00000505589 AATKQ6ZMQ8 1374 aa14.32□□□□□ -0.12
NEDD9-210ENST00000505589 EXOC5O00471 708 aa14.31□□□□□ -0.12
NEDD9-210ENST00000505589 PHRF1Q9P1Y6 1649 aaKnown RBP14.3□□□□□ -0.12
NEDD9-210ENST00000505589 ZBTB7CA1YPR0 619 aa14.3□□□□□ -0.12
NEDD9-210ENST00000505589 STK32BQ9NY57 414 aa14.3□□□□□ -0.12
NEDD9-210ENST00000505589 CENPJQ9HC77 1338 aaPredicted RBP14.3□□□□□ -0.12
NEDD9-210ENST00000505589 ADRA2BP18089 450 aa14.29□□□□□ -0.12
NEDD9-210ENST00000505589 CABP1Q9NZU7 370 aa14.29□□□□□ -0.12
NEDD9-210ENST00000505589 PPIP5K1Q6PFW1 1433 aa14.29□□□□□ -0.12
NEDD9-210ENST00000505589 RREB1Q92766 1687 aa14.29□□□□□ -0.12
NEDD9-210ENST00000505589 BCL9O00512 1426 aa14.28□□□□□ -0.12
NEDD9-210ENST00000505589 COL5A2P05997 1499 aaPredicted RBP14.28□□□□□ -0.12
NEDD9-210ENST00000505589 WDR17Q8IZU2 1322 aa14.27□□□□□ -0.12
NEDD9-210ENST00000505589 CSB-PGBD3P0DP91 1061 aa14.27□□□□□ -0.13
NEDD9-210ENST00000505589 CARD10Q9BWT7 1032 aa14.27□□□□□ -0.13
NEDD9-210ENST00000505589 CABP2Q9NPB3 220 aa14.27□□□□□ -0.13
NEDD9-210ENST00000505589 ARHGEF28Q8N1W1 1705 aaKnown RBP14.27□□□□□ -0.13
NEDD9-210ENST00000505589 PARP4Q9UKK3 1724 aaKnown RBP14.27□□□□□ -0.13
NEDD9-210ENST00000505589 SLC15A2Q16348 729 aa14.26□□□□□ -0.13
NEDD9-210ENST00000505589 MTFR1LQ9H019 292 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms