RNA–Protein interactions for RNA: ENST00000498325.5

HMGXB4-208, Transcript of HMG-box containing 4, humanhuman

TSL 3

Gene HMGXB4, Length 867 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB4-208ENST00000498325 KIF13AQ9H1H9 1805 aa9.03□□□□□ -0.96
HMGXB4-208ENST00000498325 TDRD9Q8NDG6 1382 aaKnown RBP9.02□□□□□ -0.97
HMGXB4-208ENST00000498325 CD46P15529 392 aa9.02□□□□□ -0.97
HMGXB4-208ENST00000498325 GMPRP36959 345 aa9.02□□□□□ -0.97
HMGXB4-208ENST00000498325 ZSCAN1Q8NBB4 408 aa9.01□□□□□ -0.97
HMGXB4-208ENST00000498325 IRF7Q92985 503 aa9.01□□□□□ -0.97
HMGXB4-208ENST00000498325 BMP1P13497 986 aa8.99□□□□□ -0.97
HMGXB4-208ENST00000498325 FAM69CQ0P6D2 419 aa8.99□□□□□ -0.97
HMGXB4-208ENST00000498325 NPAS3Q8IXF0 933 aa8.99□□□□□ -0.97
HMGXB4-208ENST00000498325 HLA-CQ95604 372 aa8.99□□□□□ -0.97
HMGXB4-208ENST00000498325 RAD54L2Q9Y4B4 1467 aa8.98□□□□□ -0.97
HMGXB4-208ENST00000498325 USP46P62068 366 aa8.98□□□□□ -0.97
HMGXB4-208ENST00000498325 SYNJ2O15056 1496 aa8.97□□□□□ -0.97
HMGXB4-208ENST00000498325 ADGRL1O94910 1474 aa8.97□□□□□ -0.97
HMGXB4-208ENST00000498325 CAPN5O15484 640 aaPredicted RBP8.97□□□□□ -0.97
HMGXB4-208ENST00000498325 VEGFBP49765 207 aa8.97□□□□□ -0.97
HMGXB4-208ENST00000498325 TRIM46Q7Z4K8 759 aa8.97□□□□□ -0.97
HMGXB4-208ENST00000498325 GPIHBP1Q8IV16 184 aa8.97□□□□□ -0.97
HMGXB4-208ENST00000498325 EHBP1Q8NDI1 1231 aa8.97□□□□□ -0.97
HMGXB4-208ENST00000498325 WASF2Q9Y6W5 498 aa8.97□□□□□ -0.97
HMGXB4-208ENST00000498325 POLA1P09884 1462 aaPredicted RBP8.96□□□□□ -0.97
HMGXB4-208ENST00000498325 DNMBPQ6XZF7 1577 aa8.96□□□□□ -0.97
HMGXB4-208ENST00000498325 JUNDP17535 347 aa8.96□□□□□ -0.98
HMGXB4-208ENST00000498325 LORP23490 312 aaPredicted RBP8.96□□□□□ -0.98
HMGXB4-208ENST00000498325 ABCC8Q09428 1581 aa8.95□□□□□ -0.98
HMGXB4-208ENST00000498325 KDM6BO15054 1643 aa8.95□□□□□ -0.98
HMGXB4-208ENST00000498325 H3BM21 787 aa8.95□□□□□ -0.98
HMGXB4-208ENST00000498325 SIAH2O43255 324 aa8.95□□□□□ -0.98
HMGXB4-208ENST00000498325 HOXA2O43364 376 aa8.94□□□□□ -0.98
HMGXB4-208ENST00000498325 ABCC10Q5T3U5 1492 aa8.94□□□□□ -0.98
HMGXB4-208ENST00000498325 PTCRAQ6ISU1 281 aaPredicted RBP8.93□□□□□ -0.98
HMGXB4-208ENST00000498325 NUDT12Q9BQG2 462 aa8.93□□□□□ -0.98
HMGXB4-208ENST00000498325 MAGI1Q96QZ7 1491 aaPredicted RBP8.93□□□□□ -0.98
HMGXB4-208ENST00000498325 SOGA1O94964 1423 aa8.92□□□□□ -0.98
HMGXB4-208ENST00000498325 ERBB4Q15303 1308 aa8.92□□□□□ -0.98
HMGXB4-208ENST00000498325 GUCA2AQ02747 115 aa8.92□□□□□ -0.98
HMGXB4-208ENST00000498325 SYMPKQ92797 1274 aaKnown RBP8.92□□□□□ -0.98
HMGXB4-208ENST00000498325 PRDM2Q13029 1718 aa8.91□□□□□ -0.98
HMGXB4-208ENST00000498325 TOP2AP11388 1531 aaKnown RBP8.91□□□□□ -0.98
HMGXB4-208ENST00000498325 LOC100996750A0A140TA64 210 aa8.91□□□□□ -0.98
HMGXB4-208ENST00000498325 MDM2Q00987 491 aaPredicted RBP8.91□□□□□ -0.98
HMGXB4-208ENST00000498325 KRTAP4-6Q9BYQ5 205 aa8.91□□□□□ -0.98
HMGXB4-208ENST00000498325 DISP3Q9P2K9 1392 aa8.9□□□□□ -0.98
HMGXB4-208ENST00000498325 MAP2K5Q13163 448 aa8.9□□□□□ -0.98
HMGXB4-208ENST00000498325 ZFP42Q96MM3 310 aa8.9□□□□□ -0.98
HMGXB4-208ENST00000498325 SH3BP2P78314 561 aa8.89□□□□□ -0.99
HMGXB4-208ENST00000498325 RETREG3Q86VR2 466 aa8.89□□□□□ -0.99
HMGXB4-208ENST00000498325 GRIN2BQ13224 1484 aa8.89□□□□□ -0.99
HMGXB4-208ENST00000498325 DIP2BQ9P265 1576 aa8.88□□□□□ -0.99
HMGXB4-208ENST00000498325 CEP170Q5SW79 1584 aa8.87□□□□□ -0.99
HMGXB4-208ENST00000498325 IRF6O14896 467 aa8.86□□□□□ -0.99
HMGXB4-208ENST00000498325 CCNYL3P0C7X3 344 aa8.85□□□□□ -0.99
HMGXB4-208ENST00000498325 MS4A1P11836 297 aa8.85□□□□□ -0.99
HMGXB4-208ENST00000498325 NUTM1Q86Y26 1132 aa8.85□□□□□ -0.99
HMGXB4-208ENST00000498325 TLL2Q9Y6L7 1015 aa8.85□□□□□ -0.99
HMGXB4-208ENST00000498325 CCDC88BA6NC98 1476 aa8.84□□□□□ -0.99
HMGXB4-208ENST00000498325 PLEKHG3A1L390 1219 aa8.83□□□□□ -1
HMGXB4-208ENST00000498325 C6orf229H3BNL8 230 aa8.83□□□□□ -1
HMGXB4-208ENST00000498325 SCARF1Q14162 830 aa8.83□□□□□ -1
HMGXB4-208ENST00000498325 MRPL14Q6P1L8 145 aaKnown RBP8.83□□□□□ -1
HMGXB4-208ENST00000498325 UNC93B1Q9H1C4 597 aa8.83□□□□□ -1
HMGXB4-208ENST00000498325 MAPKBP1O60336 1514 aa8.83□□□□□ -1
HMGXB4-208ENST00000498325 WDR97A6NE52 1622 aa8.83□□□□□ -1
HMGXB4-208ENST00000498325 NNTQ13423 1086 aa8.82□□□□□ -1
HMGXB4-208ENST00000498325 LINC01559Q495D7 138 aa8.82□□□□□ -1
HMGXB4-208ENST00000498325 GPCPD1Q9NPB8 672 aa8.82□□□□□ -1
HMGXB4-208ENST00000498325 MINK1Q8N4C8 1332 aaPredicted RBP8.81□□□□□ -1
HMGXB4-208ENST00000498325 FDX1P10109 184 aa8.81□□□□□ -1
HMGXB4-208ENST00000498325 BAP1Q92560 729 aa8.81□□□□□ -1
HMGXB4-208ENST00000498325 PURBQ96QR8 312 aaKnown RBP8.81□□□□□ -1
HMGXB4-208ENST00000498325 FAM217BQ9NTX9 383 aaPredicted RBP8.81□□□□□ -1
HMGXB4-208ENST00000498325 FGD5Q6ZNL6 1462 aa8.81□□□□□ -1
HMGXB4-208ENST00000498325 VSIG8P0DPA2 414 aa8.8□□□□□ -1
HMGXB4-208ENST00000498325 CLCN1P35523 988 aa8.8□□□□□ -1
HMGXB4-208ENST00000498325 PTPRNQ16849 979 aa8.8□□□□□ -1
HMGXB4-208ENST00000498325 EVA1BQ9NVM1 165 aa8.8□□□□□ -1
HMGXB4-208ENST00000498325 PCDHGC3Q9UN70 934 aa8.8□□□□□ -1
HMGXB4-208ENST00000498325 SHROOM2Q13796 1616 aa8.8□□□□□ -1
HMGXB4-208ENST00000498325 TSPOAP1O95153 1857 aa8.79□□□□□ -1
HMGXB4-208ENST00000498325 COL17A1Q9UMD9 1497 aaPredicted RBP8.79□□□□□ -1
HMGXB4-208ENST00000498325 SOBPA7XYQ1 873 aa8.79□□□□□ -1
HMGXB4-208ENST00000498325 VARSP26640 1264 aaKnown RBP8.79□□□□□ -1
HMGXB4-208ENST00000498325 WDR4P57081 412 aaKnown RBP8.79□□□□□ -1
HMGXB4-208ENST00000498325 SUZ12Q15022 739 aaKnown RBP8.79□□□□□ -1
HMGXB4-208ENST00000498325 MPNDQ8N594 471 aa8.79□□□□□ -1
HMGXB4-208ENST00000498325 ZNF511Q8NB15 262 aa8.79□□□□□ -1
HMGXB4-208ENST00000498325 NUP160Q12769 1436 aa8.79□□□□□ -1
HMGXB4-208ENST00000498325 GRIN2AQ12879 1464 aa8.78□□□□□ -1
HMGXB4-208ENST00000498325 ADH1CP00326 375 aa8.78□□□□□ -1
HMGXB4-208ENST00000498325 TIMP2P16035 220 aa8.78□□□□□ -1
HMGXB4-208ENST00000498325 KCNH2Q12809 1159 aa8.78□□□□□ -1
HMGXB4-208ENST00000498325 KRI1Q8N9T8 703 aaKnown RBP8.78□□□□□ -1
HMGXB4-208ENST00000498325 CCDC102AQ96A19 550 aa8.78□□□□□ -1
HMGXB4-208ENST00000498325 PRG4Q92954 1404 aaPredicted RBP8.78□□□□□ -1
HMGXB4-208ENST00000498325 PBRM1Q86U86 1689 aa8.75□□□□□ -1.01
HMGXB4-208ENST00000498325 ADCY10Q96PN6 1610 aa8.74□□□□□ -1.01
HMGXB4-208ENST00000498325 TULP1O00294 542 aaPredicted RBP8.74□□□□□ -1.01
HMGXB4-208ENST00000498325 MAN1A2O60476 641 aa8.74□□□□□ -1.01
HMGXB4-208ENST00000498325 KCNMA1Q12791 1236 aa8.74□□□□□ -1.01
HMGXB4-208ENST00000498325 KCTD17Q8N5Z5 321 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms