RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 C6orf229H3BNL8 230 aa7.74□□□□□ -1.17
USP54-217ENST00000498213 DXOO77932 396 aaKnown RBP7.74□□□□□ -1.17
USP54-217ENST00000498213 MS4A1P11836 297 aa7.74□□□□□ -1.17
USP54-217ENST00000498213 CCDC24Q8N4L8 307 aa7.74□□□□□ -1.17
USP54-217ENST00000498213 ATP13A2Q9NQ11 1180 aa7.74□□□□□ -1.17
USP54-217ENST00000498213 J3QL48 77 aa7.73□□□□□ -1.17
USP54-217ENST00000498213 TBC1D2Q9BYX2 928 aa7.73□□□□□ -1.17
USP54-217ENST00000498213 DISP3Q9P2K9 1392 aa7.71□□□□□ -1.17
USP54-217ENST00000498213 MOXD2PA6NHM9 499 aa7.71□□□□□ -1.18
USP54-217ENST00000498213 SNRPBP14678 240 aaKnown RBP7.71□□□□□ -1.18
USP54-217ENST00000498213 NDUFV2P19404 249 aa7.71□□□□□ -1.18
USP54-217ENST00000498213 NFX1Q12986 1120 aaKnown RBP7.71□□□□□ -1.18
USP54-217ENST00000498213 RC3H1Q5TC82 1133 aaKnown RBP7.71□□□□□ -1.18
USP54-217ENST00000498213 SENP2Q9HC62 589 aa7.71□□□□□ -1.18
USP54-217ENST00000498213 RETREG3Q86VR2 466 aa7.7□□□□□ -1.18
USP54-217ENST00000498213 SYMPKQ92797 1274 aaKnown RBP7.7□□□□□ -1.18
USP54-217ENST00000498213 HPS1Q92902 700 aa7.7□□□□□ -1.18
USP54-217ENST00000498213 IFT140Q96RY7 1462 aa7.69□□□□□ -1.18
USP54-217ENST00000498213 ERCC6L2Q5T890 1561 aa7.69□□□□□ -1.18
USP54-217ENST00000498213 WNT7BP56706 349 aa7.69□□□□□ -1.18
USP54-217ENST00000498213 TRIM47Q96LD4 638 aa7.69□□□□□ -1.18
USP54-217ENST00000498213 CHD1O14646 1710 aa7.69□□□□□ -1.18
USP54-217ENST00000498213 AQRO60306 1485 aaKnown RBP eCLIP7.68□□□□□ -1.18
USP54-217ENST00000498213 HECW2Q9P2P5 1572 aa7.68□□□□□ -1.18
USP54-217ENST00000498213 SKOR1P84550 965 aa7.68□□□□□ -1.18
USP54-217ENST00000498213 MTMR2Q13614 643 aa7.68□□□□□ -1.18
USP54-217ENST00000498213 PCDHGC3Q9UN70 934 aa7.68□□□□□ -1.18
USP54-217ENST00000498213 WIPF1O43516 503 aa7.67□□□□□ -1.18
USP54-217ENST00000498213 JUNDP17535 347 aa7.67□□□□□ -1.18
USP54-217ENST00000498213 INSM1Q01101 510 aaPredicted RBP7.67□□□□□ -1.18
USP54-217ENST00000498213 CSPP1Q1MSJ5 1256 aa7.67□□□□□ -1.18
USP54-217ENST00000498213 RSBN1LQ6PCB5 846 aaPredicted RBP7.67□□□□□ -1.18
USP54-217ENST00000498213 RIC3Q7Z5B4 369 aa7.67□□□□□ -1.18
USP54-217ENST00000498213 ATP1B4Q9UN42 357 aaPredicted RBP7.67□□□□□ -1.18
USP54-217ENST00000498213 SPDYE5A6NIY4 337 aa7.66□□□□□ -1.18
USP54-217ENST00000498213 TERTO14746 1132 aaKnown RBP7.66□□□□□ -1.18
USP54-217ENST00000498213 ALDH1A1P00352 501 aa7.66□□□□□ -1.18
USP54-217ENST00000498213 GJA5P36382 358 aa7.66□□□□□ -1.18
USP54-217ENST00000498213 KIFC2Q96AC6 838 aa7.66□□□□□ -1.18
USP54-217ENST00000498213 RSPH6AQ9H0K4 717 aa7.66□□□□□ -1.18
USP54-217ENST00000498213 KDM4CQ9H3R0 1056 aa7.66□□□□□ -1.18
USP54-217ENST00000498213 GPBP1L1Q9HC44 474 aaPredicted RBP7.66□□□□□ -1.18
USP54-217ENST00000498213 STK17AQ9UEE5 414 aa7.66□□□□□ -1.18
USP54-217ENST00000498213 GAPVD1Q14C86 1478 aa7.66□□□□□ -1.18
USP54-217ENST00000498213 SYNJ2O15056 1496 aa7.65□□□□□ -1.18
USP54-217ENST00000498213 TPRNQ4KMQ1 711 aa7.65□□□□□ -1.18
USP54-217ENST00000498213 PEG3Q9GZU2 1588 aa7.65□□□□□ -1.18
USP54-217ENST00000498213 ZBTB3Q9H5J0 574 aa7.65□□□□□ -1.18
USP54-217ENST00000498213 EIF4G3O43432 1585 aaKnown RBP7.64□□□□□ -1.19
USP54-217ENST00000498213 NUTM2BA6NNL0 878 aaPredicted RBP7.64□□□□□ -1.19
USP54-217ENST00000498213 NUTM2EB1AL46 878 aaPredicted RBP7.64□□□□□ -1.19
USP54-217ENST00000498213 SPTLC1O15269 473 aa7.64□□□□□ -1.19
USP54-217ENST00000498213 NUTM2DQ5VT03 806 aaPredicted RBP7.64□□□□□ -1.19
USP54-217ENST00000498213 MYSM1Q5VVJ2 828 aa7.64□□□□□ -1.19
USP54-217ENST00000498213 NUTM2AQ8IVF1 878 aaPredicted RBP7.64□□□□□ -1.19
USP54-217ENST00000498213 PRR7Q8TB68 274 aa7.64□□□□□ -1.19
USP54-217ENST00000498213 DDRGK1Q96HY6 314 aa7.64□□□□□ -1.19
USP54-217ENST00000498213 NUDT12Q9BQG2 462 aa7.64□□□□□ -1.19
USP54-217ENST00000498213 FAM69CQ0P6D2 419 aa7.63□□□□□ -1.19
USP54-217ENST00000498213 CHMP7Q8WUX9 453 aaPredicted RBP7.63□□□□□ -1.19
USP54-217ENST00000498213 TSC1Q92574 1164 aa7.63□□□□□ -1.19
USP54-217ENST00000498213 CLK2P49760 499 aaKnown RBP7.62□□□□□ -1.19
USP54-217ENST00000498213 NEUROD2Q15784 382 aa7.62□□□□□ -1.19
USP54-217ENST00000498213 LCE2CQ5TA81 110 aa7.62□□□□□ -1.19
USP54-217ENST00000498213 EHBP1Q8NDI1 1231 aa7.62□□□□□ -1.19
USP54-217ENST00000498213 PCDHB15Q9Y5E8 787 aa7.62□□□□□ -1.19
USP54-217ENST00000498213 CCNYL3P0C7X3 344 aa7.61□□□□□ -1.19
USP54-217ENST00000498213 HRCP23327 699 aa7.61□□□□□ -1.19
USP54-217ENST00000498213 PRPF38BQ5VTL8 546 aaKnown RBP7.61□□□□□ -1.19
USP54-217ENST00000498213 PTCRAQ6ISU1 281 aaPredicted RBP7.61□□□□□ -1.19
USP54-217ENST00000498213 POLR3EQ9NVU0 708 aa7.61□□□□□ -1.19
USP54-217ENST00000498213 CFTRP13569 1480 aa7.61□□□□□ -1.19
USP54-217ENST00000498213 MROH2BQ7Z745 1585 aa7.6□□□□□ -1.19
USP54-217ENST00000498213 SIAH2O43255 324 aa7.6□□□□□ -1.19
USP54-217ENST00000498213 PTPRNQ16849 979 aa7.6□□□□□ -1.19
USP54-217ENST00000498213 CABLES1Q8TDN4 633 aa7.6□□□□□ -1.19
USP54-217ENST00000498213 LIMD1Q9UGP4 676 aa7.6□□□□□ -1.19
USP54-217ENST00000498213 WASF2Q9Y6W5 498 aa7.6□□□□□ -1.19
USP54-217ENST00000498213 CLASP1Q7Z460 1538 aa7.6□□□□□ -1.19
USP54-217ENST00000498213 ADGRL1O94910 1474 aa7.6□□□□□ -1.19
USP54-217ENST00000498213 DESI1Q6ICB0 168 aa7.59□□□□□ -1.19
USP54-217ENST00000498213 SLC16A10Q8TF71 515 aa7.59□□□□□ -1.19
USP54-217ENST00000498213 FAM117AQ9C073 453 aa7.59□□□□□ -1.19
USP54-217ENST00000498213 CAPN5O15484 640 aaPredicted RBP7.58□□□□□ -1.2
USP54-217ENST00000498213 BMP1P13497 986 aa7.58□□□□□ -1.2
USP54-217ENST00000498213 CTHP32929 405 aa7.58□□□□□ -1.2
USP54-217ENST00000498213 HELBQ8NG08 1087 aaPredicted RBP7.58□□□□□ -1.2
USP54-217ENST00000498213 CFAP99D6REC4 459 aa7.57□□□□□ -1.2
USP54-217ENST00000498213 SH3BP2P78314 561 aa7.57□□□□□ -1.2
USP54-217ENST00000498213 QPCTQ16769 361 aa7.57□□□□□ -1.2
USP54-217ENST00000498213 TUSC1Q2TAM9 212 aa7.57□□□□□ -1.2
USP54-217ENST00000498213 TRIM46Q7Z4K8 759 aa7.57□□□□□ -1.2
USP54-217ENST00000498213 SH3D19Q5HYK7 790 aa7.56□□□□□ -1.2
USP54-217ENST00000498213 NXF1Q9UBU9 619 aaKnown RBP7.56□□□□□ -1.2
USP54-217ENST00000498213 LILRB3O75022 631 aa7.55□□□□□ -1.2
USP54-217ENST00000498213 SKIV2LQ15477 1246 aaKnown RBP7.55□□□□□ -1.2
USP54-217ENST00000498213 LINC01559Q495D7 138 aa7.55□□□□□ -1.2
USP54-217ENST00000498213 UNC93B1Q9H1C4 597 aa7.55□□□□□ -1.2
USP54-217ENST00000498213 KDM6BO15054 1643 aa7.55□□□□□ -1.2
USP54-217ENST00000498213 TDRD9Q8NDG6 1382 aaKnown RBP7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms