RNA–Protein interactions for RNA: ENST00000489535.2

SMC6-209, Transcript of structural maintenance of chromosomes 6, humanhuman

TSL 2

Gene SMC6, Length 550 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC6-209ENST00000489535 REPIN1Q9BWE0 567 aaKnown RBP12.3□□□□□ -0.44
SMC6-209ENST00000489535 CHD1O14646 1710 aa12.3□□□□□ -0.44
SMC6-209ENST00000489535 FAM181BA6NEQ2 426 aa12.29□□□□□ -0.44
SMC6-209ENST00000489535 GNPATO15228 680 aa12.29□□□□□ -0.44
SMC6-209ENST00000489535 TSHZ2Q9NRE2 1034 aa12.29□□□□□ -0.44
SMC6-209ENST00000489535 SNAPC4Q5SXM2 1469 aa12.28□□□□□ -0.44
SMC6-209ENST00000489535 PHOX2BQ99453 314 aa12.28□□□□□ -0.44
SMC6-209ENST00000489535 GPR37O15354 613 aa12.27□□□□□ -0.45
SMC6-209ENST00000489535 GMPRP36959 345 aa12.27□□□□□ -0.45
SMC6-209ENST00000489535 SLC16A10Q8TF71 515 aa12.27□□□□□ -0.45
SMC6-209ENST00000489535 NXF1Q9UBU9 619 aaKnown RBP12.27□□□□□ -0.45
SMC6-209ENST00000489535 FHAD1B1AJZ9 1412 aa12.27□□□□□ -0.45
SMC6-209ENST00000489535 CLIP1P30622 1438 aa12.27□□□□□ -0.45
SMC6-209ENST00000489535 SKOR1P84550 965 aa12.26□□□□□ -0.45
SMC6-209ENST00000489535 MAGI1Q96QZ7 1491 aaPredicted RBP12.26□□□□□ -0.45
SMC6-209ENST00000489535 DXOO77932 396 aaKnown RBP12.25□□□□□ -0.45
SMC6-209ENST00000489535 SUZ12Q15022 739 aaKnown RBP12.25□□□□□ -0.45
SMC6-209ENST00000489535 GRIPAP1Q4V328 841 aa12.25□□□□□ -0.45
SMC6-209ENST00000489535 RBM26Q5T8P6 1007 aaKnown RBP12.25□□□□□ -0.45
SMC6-209ENST00000489535 RC3H1Q5TC82 1133 aaKnown RBP12.25□□□□□ -0.45
SMC6-209ENST00000489535 Q3C1V9 767 aa12.24□□□□□ -0.45
SMC6-209ENST00000489535 ZSCAN1Q8NBB4 408 aa12.24□□□□□ -0.45
SMC6-209ENST00000489535 RANGAP1P46060 587 aaPredicted RBP12.22□□□□□ -0.45
SMC6-209ENST00000489535 WNT7BP56706 349 aa12.21□□□□□ -0.45
SMC6-209ENST00000489535 NPAS3Q8IXF0 933 aa12.21□□□□□ -0.45
SMC6-209ENST00000489535 USB1Q9BQ65 265 aaKnown RBP12.21□□□□□ -0.45
SMC6-209ENST00000489535 IQGAP2Q13576 1575 aa12.21□□□□□ -0.46
SMC6-209ENST00000489535 P3H3Q8IVL6 736 aa12.2□□□□□ -0.46
SMC6-209ENST00000489535 IRF7Q92985 503 aa12.2□□□□□ -0.46
SMC6-209ENST00000489535 SYNJ2O15056 1496 aa12.2□□□□□ -0.46
SMC6-209ENST00000489535 GRIN2AQ12879 1464 aa12.2□□□□□ -0.46
SMC6-209ENST00000489535 ARAP1Q96P48 1450 aa12.2□□□□□ -0.46
SMC6-209ENST00000489535 SAMD9Q5K651 1589 aa12.19□□□□□ -0.46
SMC6-209ENST00000489535 TRIM46Q7Z4K8 759 aa12.19□□□□□ -0.46
SMC6-209ENST00000489535 EFCAB5A4FU69 1503 aa12.19□□□□□ -0.46
SMC6-209ENST00000489535 ARHGAP35Q9NRY4 1499 aa12.19□□□□□ -0.46
SMC6-209ENST00000489535 CEP170Q5SW79 1584 aa12.18□□□□□ -0.46
SMC6-209ENST00000489535 ALDH1A1P00352 501 aa12.18□□□□□ -0.46
SMC6-209ENST00000489535 BMP1P13497 986 aa12.18□□□□□ -0.46
SMC6-209ENST00000489535 TESPA1A2RU30 521 aaPredicted RBP12.17□□□□□ -0.46
SMC6-209ENST00000489535 CCDC24Q8N4L8 307 aa12.17□□□□□ -0.46
SMC6-209ENST00000489535 H3BM21 787 aa12.16□□□□□ -0.46
SMC6-209ENST00000489535 VEGFBP49765 207 aa12.16□□□□□ -0.46
SMC6-209ENST00000489535 VPS8Q8N3P4 1428 aa12.16□□□□□ -0.46
SMC6-209ENST00000489535 ERBB4Q15303 1308 aa12.15□□□□□ -0.46
SMC6-209ENST00000489535 CD46P15529 392 aa12.15□□□□□ -0.46
SMC6-209ENST00000489535 SIAH2O43255 324 aa12.14□□□□□ -0.47
SMC6-209ENST00000489535 LRRIQ1Q96JM4 1722 aa12.13□□□□□ -0.47
SMC6-209ENST00000489535 PCF11O94913 1555 aaKnown RBP12.12□□□□□ -0.47
SMC6-209ENST00000489535 CFAP43Q8NDM7 1665 aa12.11□□□□□ -0.47
SMC6-209ENST00000489535 CHMP7Q8WUX9 453 aaPredicted RBP12.11□□□□□ -0.47
SMC6-209ENST00000489535 HLA-CQ95604 372 aa12.11□□□□□ -0.47
SMC6-209ENST00000489535 CAPN5O15484 640 aaPredicted RBP12.1□□□□□ -0.47
SMC6-209ENST00000489535 KDM4AO75164 1064 aa12.1□□□□□ -0.47
SMC6-209ENST00000489535 KIAA0556O60303 1618 aa12.1□□□□□ -0.47
SMC6-209ENST00000489535 KIAA0586Q9BVV6 1533 aa12.1□□□□□ -0.47
SMC6-209ENST00000489535 UGGT2Q9NYU1 1516 aa12.1□□□□□ -0.47
SMC6-209ENST00000489535 SMYD5Q6GMV2 418 aa12.08□□□□□ -0.48
SMC6-209ENST00000489535 NUP160Q12769 1436 aa12.08□□□□□ -0.48
SMC6-209ENST00000489535 FHOD3Q2V2M9 1422 aa12.08□□□□□ -0.48
SMC6-209ENST00000489535 AMER1Q5JTC6 1135 aaPredicted RBP12.06□□□□□ -0.48
SMC6-209ENST00000489535 EHBP1Q8NDI1 1231 aa12.06□□□□□ -0.48
SMC6-209ENST00000489535 JUNDP17535 347 aa12.05□□□□□ -0.48
SMC6-209ENST00000489535 PTCRAQ6ISU1 281 aaPredicted RBP12.05□□□□□ -0.48
SMC6-209ENST00000489535 WASF2Q9Y6W5 498 aa12.05□□□□□ -0.48
SMC6-209ENST00000489535 SHROOM2Q13796 1616 aa12.04□□□□□ -0.48
SMC6-209ENST00000489535 USP46P62068 366 aa12.04□□□□□ -0.48
SMC6-209ENST00000489535 ZFP42Q96MM3 310 aa12.04□□□□□ -0.48
SMC6-209ENST00000489535 HOXA2O43364 376 aa12.03□□□□□ -0.48
SMC6-209ENST00000489535 PPARGC1BQ86YN6 1023 aaKnown RBP12.03□□□□□ -0.48
SMC6-209ENST00000489535 TIAM1Q13009 1591 aa12.03□□□□□ -0.48
SMC6-209ENST00000489535 DISP1Q96F81 1524 aa12.02□□□□□ -0.48
SMC6-209ENST00000489535 HECW1Q76N89 1606 aa12.02□□□□□ -0.49
SMC6-209ENST00000489535 FMN1Q68DA7 1419 aa12.02□□□□□ -0.49
SMC6-209ENST00000489535 FYCO1Q9BQS8 1478 aa12.02□□□□□ -0.49
SMC6-209ENST00000489535 RTN4Q9NQC3 1192 aaKnown RBP12.01□□□□□ -0.49
SMC6-209ENST00000489535 CLASP1Q7Z460 1538 aa12.01□□□□□ -0.49
SMC6-209ENST00000489535 GUCA2AQ02747 115 aa12□□□□□ -0.49
SMC6-209ENST00000489535 SYMPKQ92797 1274 aaKnown RBP12□□□□□ -0.49
SMC6-209ENST00000489535 NUDT12Q9BQG2 462 aa12□□□□□ -0.49
SMC6-209ENST00000489535 RAPGEF6Q8TEU7 1601 aa12□□□□□ -0.49
SMC6-209ENST00000489535 SH3BP2P78314 561 aa11.99□□□□□ -0.49
SMC6-209ENST00000489535 MAP3K1Q13233 1512 aa11.98□□□□□ -0.49
SMC6-209ENST00000489535 CASKIN1Q8WXD9 1431 aa11.98□□□□□ -0.49
SMC6-209ENST00000489535 VSIG8P0DPA2 414 aa11.98□□□□□ -0.49
SMC6-209ENST00000489535 TTBK1Q5TCY1 1321 aaPredicted RBP11.96□□□□□ -0.49
SMC6-209ENST00000489535 TRIM26Q12899 539 aaPredicted RBP11.96□□□□□ -0.49
SMC6-209ENST00000489535 GPIHBP1Q8IV16 184 aa11.96□□□□□ -0.49
SMC6-209ENST00000489535 CARMIL2Q6F5E8 1435 aa11.95□□□□□ -0.5
SMC6-209ENST00000489535 GSK3AP49840 483 aa11.95□□□□□ -0.5
SMC6-209ENST00000489535 RETREG3Q86VR2 466 aa11.94□□□□□ -0.5
SMC6-209ENST00000489535 PCGF6Q9BYE7 350 aa11.94□□□□□ -0.5
SMC6-209ENST00000489535 TLL2Q9Y6L7 1015 aa11.94□□□□□ -0.5
SMC6-209ENST00000489535 KCNMA1Q12791 1236 aa11.93□□□□□ -0.5
SMC6-209ENST00000489535 MRPL14Q6P1L8 145 aaKnown RBP11.93□□□□□ -0.5
SMC6-209ENST00000489535 SUPT6HQ7KZ85 1726 aaKnown RBP11.92□□□□□ -0.5
SMC6-209ENST00000489535 ATP1B4Q9UN42 357 aaPredicted RBP11.92□□□□□ -0.5
SMC6-209ENST00000489535 ERCC6L2Q5T890 1561 aa11.92□□□□□ -0.5
SMC6-209ENST00000489535 CCDC18Q5T9S5 1454 aa11.91□□□□□ -0.5
SMC6-209ENST00000489535 SOBPA7XYQ1 873 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms