RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 ZBTB7CA1YPR0 619 aa11.49□□□□□ -0.57
USP54-213ENST00000481991 ZBTB7AO95365 584 aa11.49□□□□□ -0.57
USP54-213ENST00000481991 C1QTNF8P60827 252 aa11.49□□□□□ -0.57
USP54-213ENST00000481991 CFAP70Q5T0N1 1121 aa11.49□□□□□ -0.57
USP54-213ENST00000481991 BCL11BQ9C0K0 894 aaPredicted RBP11.49□□□□□ -0.57
USP54-213ENST00000481991 DHX57Q6P158 1386 aaKnown RBP11.49□□□□□ -0.57
USP54-213ENST00000481991 NWD2Q9ULI1 1742 aa11.49□□□□□ -0.57
USP54-213ENST00000481991 SIRT1Q96EB6 747 aa11.48□□□□□ -0.57
USP54-213ENST00000481991 MINK1Q8N4C8 1332 aaPredicted RBP11.48□□□□□ -0.57
USP54-213ENST00000481991 DISP2A7MBM2 1401 aa11.48□□□□□ -0.57
USP54-213ENST00000481991 PRAG1Q86YV5 1406 aa11.48□□□□□ -0.57
USP54-213ENST00000481991 YTHDC2Q9H6S0 1430 aaKnown RBP11.48□□□□□ -0.57
USP54-213ENST00000481991 KIF1AQ12756 1690 aa11.48□□□□□ -0.57
USP54-213ENST00000481991 RRBP1Q9P2E9 1410 aaKnown RBP11.47□□□□□ -0.57
USP54-213ENST00000481991 PARD3Q8TEW0 1356 aa11.47□□□□□ -0.57
USP54-213ENST00000481991 NINLQ9Y2I6 1382 aa11.47□□□□□ -0.57
USP54-213ENST00000481991 TRAK1Q9UPV9 953 aa11.47□□□□□ -0.57
USP54-213ENST00000481991 RGPD8O14715 1765 aaPredicted RBP11.46□□□□□ -0.57
USP54-213ENST00000481991 ANKRD30BQ9BXX2 1392 aa11.46□□□□□ -0.57
USP54-213ENST00000481991 FMN2Q9NZ56 1722 aa11.46□□□□□ -0.58
USP54-213ENST00000481991 NRXN1Q9ULB1 1477 aa11.45□□□□□ -0.58
USP54-213ENST00000481991 KIAA0232Q92628 1395 aa11.45□□□□□ -0.58
USP54-213ENST00000481991 ACIN1Q9UKV3 1341 aaKnown RBP11.45□□□□□ -0.58
USP54-213ENST00000481991 LARP1Q6PKG0 1096 aaKnown RBP11.45□□□□□ -0.58
USP54-213ENST00000481991 TCP11L2Q8N4U5 519 aa11.45□□□□□ -0.58
USP54-213ENST00000481991 C14orf93Q9H972 538 aaKnown RBP11.45□□□□□ -0.58
USP54-213ENST00000481991 TECPR2O15040 1411 aa11.44□□□□□ -0.58
USP54-213ENST00000481991 PELP1Q8IZL8 1130 aaKnown RBP11.44□□□□□ -0.58
USP54-213ENST00000481991 PDGFDQ9GZP0 370 aaPredicted RBP11.44□□□□□ -0.58
USP54-213ENST00000481991 PPLO60437 1756 aa11.44□□□□□ -0.58
USP54-213ENST00000481991 ADGRB2O60241 1585 aa11.43□□□□□ -0.58
USP54-213ENST00000481991 GPR162Q16538 588 aa11.43□□□□□ -0.58
USP54-213ENST00000481991 BARGINQ6ZT62 677 aa11.43□□□□□ -0.58
USP54-213ENST00000481991 COL14A1Q05707 1796 aaKnown RBP11.43□□□□□ -0.58
USP54-213ENST00000481991 KLHL34Q8N239 644 aa11.42□□□□□ -0.58
USP54-213ENST00000481991 SYT17Q9BSW7 474 aa11.42□□□□□ -0.58
USP54-213ENST00000481991 FHDC1Q9C0D6 1143 aaPredicted RBP11.42□□□□□ -0.58
USP54-213ENST00000481991 STK32BQ9NY57 414 aa11.42□□□□□ -0.58
USP54-213ENST00000481991 KDM2AQ9Y2K7 1162 aa11.42□□□□□ -0.58
USP54-213ENST00000481991 TNS1Q9HBL0 1735 aaKnown RBP11.41□□□□□ -0.58
USP54-213ENST00000481991 WASLO00401 505 aaPredicted RBP11.41□□□□□ -0.58
USP54-213ENST00000481991 GIGYF1O75420 1035 aaPredicted RBP11.41□□□□□ -0.58
USP54-213ENST00000481991 ABTB2Q8N961 1025 aa11.41□□□□□ -0.58
USP54-213ENST00000481991 MPHOSPH9Q99550 1183 aa11.4□□□□□ -0.58
USP54-213ENST00000481991 ANO8Q9HCE9 1232 aaPredicted RBP11.4□□□□□ -0.58
USP54-213ENST00000481991 NRAPQ86VF7 1730 aa11.4□□□□□ -0.58
USP54-213ENST00000481991 CAMTA1Q9Y6Y1 1673 aa11.4□□□□□ -0.59
USP54-213ENST00000481991 PRR36Q9H6K5 1346 aa11.39□□□□□ -0.59
USP54-213ENST00000481991 C11orf95C9JLR9 678 aaPredicted RBP11.39□□□□□ -0.59
USP54-213ENST00000481991 PLSCR1O15162 318 aa11.39□□□□□ -0.59
USP54-213ENST00000481991 ABCA3Q99758 1704 aa11.38□□□□□ -0.59
USP54-213ENST00000481991 ANKARQ7Z5J8 1434 aa11.38□□□□□ -0.59
USP54-213ENST00000481991 PTGER2P43116 358 aa11.38□□□□□ -0.59
USP54-213ENST00000481991 DDB1Q16531 1140 aa11.38□□□□□ -0.59
USP54-213ENST00000481991 PTF1AQ7RTS3 328 aa11.38□□□□□ -0.59
USP54-213ENST00000481991 NUDT16Q96DE0 195 aaKnown RBP11.38□□□□□ -0.59
USP54-213ENST00000481991 THRAP3Q9Y2W1 955 aaKnown RBP11.38□□□□□ -0.59
USP54-213ENST00000481991 IFT172Q9UG01 1749 aa11.38□□□□□ -0.59
USP54-213ENST00000481991 THSD7AQ9UPZ6 1657 aa11.37□□□□□ -0.59
USP54-213ENST00000481991 PIK3C2GO75747 1445 aa11.37□□□□□ -0.59
USP54-213ENST00000481991 TOM1L2Q6ZVM7 507 aa11.37□□□□□ -0.59
USP54-213ENST00000481991 SSH2Q76I76 1423 aa11.36□□□□□ -0.59
USP54-213ENST00000481991 ARXQ96QS3 562 aa11.36□□□□□ -0.59
USP54-213ENST00000481991 EIF3AQ14152 1382 aaKnown RBP11.36□□□□□ -0.59
USP54-213ENST00000481991 SLC15A2Q16348 729 aa11.35□□□□□ -0.59
USP54-213ENST00000481991 NLRP13Q86W25 1043 aa11.35□□□□□ -0.59
USP54-213ENST00000481991 PROM2Q8N271 834 aa11.35□□□□□ -0.59
USP54-213ENST00000481991 CDK19Q9BWU1 502 aa11.35□□□□□ -0.59
USP54-213ENST00000481991 NUP188Q5SRE5 1749 aa11.35□□□□□ -0.59
USP54-213ENST00000481991 GCP02774 474 aa11.34□□□□□ -0.59
USP54-213ENST00000481991 TXNRD1Q16881 649 aa11.34□□□□□ -0.59
USP54-213ENST00000481991 MTFR1LQ9H019 292 aa11.34□□□□□ -0.59
USP54-213ENST00000481991 KNDC1Q76NI1 1749 aa11.34□□□□□ -0.59
USP54-213ENST00000481991 SPATA31E1Q6ZUB1 1445 aa11.34□□□□□ -0.59
USP54-213ENST00000481991 ACEP12821 1306 aa11.34□□□□□ -0.59
USP54-213ENST00000481991 CSB-PGBD3P0DP91 1061 aa11.33□□□□□ -0.6
USP54-213ENST00000481991 NRKQ7Z2Y5 1582 aa11.33□□□□□ -0.6
USP54-213ENST00000481991 DCAF11Q8TEB1 546 aa11.32□□□□□ -0.6
USP54-213ENST00000481991 RREB1Q92766 1687 aa11.31□□□□□ -0.6
USP54-213ENST00000481991 EXOC5O00471 708 aa11.31□□□□□ -0.6
USP54-213ENST00000481991 MARCH10Q8NA82 808 aaPredicted RBP11.31□□□□□ -0.6
USP54-213ENST00000481991 ACSBG1Q96GR2 724 aa11.31□□□□□ -0.6
USP54-213ENST00000481991 OVOS2A0A0G2JMS6 1433 aa11.31□□□□□ -0.6
USP54-213ENST00000481991 OVOS2A0A0J9YW53 1432 aa11.31□□□□□ -0.6
USP54-213ENST00000481991 OVOS2Q6IE36 1432 aa11.31□□□□□ -0.6
USP54-213ENST00000481991 TRPM3Q9HCF6 1732 aaPredicted RBP11.31□□□□□ -0.6
USP54-213ENST00000481991 ALS2Q96Q42 1657 aa11.3□□□□□ -0.6
USP54-213ENST00000481991 SOX12O15370 315 aa11.3□□□□□ -0.6
USP54-213ENST00000481991 NLRP6P59044 892 aa11.3□□□□□ -0.6
USP54-213ENST00000481991 CCDC61Q9Y6R9 512 aa11.3□□□□□ -0.6
USP54-213ENST00000481991 POLD1P28340 1107 aa11.28□□□□□ -0.6
USP54-213ENST00000481991 SRPK2P78362 688 aaKnown RBP11.28□□□□□ -0.6
USP54-213ENST00000481991 TULP4Q9NRJ4 1543 aa11.28□□□□□ -0.6
USP54-213ENST00000481991 CRB1P82279 1406 aa11.27□□□□□ -0.6
USP54-213ENST00000481991 MYOM1P52179 1685 aa11.27□□□□□ -0.6
USP54-213ENST00000481991 ZNF526Q8TF50 670 aaPredicted RBP11.27□□□□□ -0.61
USP54-213ENST00000481991 MSH5O43196 834 aa11.26□□□□□ -0.61
USP54-213ENST00000481991 CDCA7Q9BWT1 371 aaPredicted RBP11.26□□□□□ -0.61
USP54-213ENST00000481991 DLC1Q96QB1 1528 aa11.25□□□□□ -0.61
USP54-213ENST00000481991 CHD4Q14839 1912 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms