RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 COG6Q9Y2V7 657 aa10.58□□□□□ -0.72
SYNE1-224ENST00000478916 TMEM132EQ6IEE7 984 aa10.58□□□□□ -0.72
SYNE1-224ENST00000478916 SNAPC4Q5SXM2 1469 aa10.58□□□□□ -0.72
SYNE1-224ENST00000478916 CT47B1P0C2W7 299 aaPredicted RBP10.58□□□□□ -0.72
SYNE1-224ENST00000478916 RBM10P98175 930 aaKnown RBP10.58□□□□□ -0.72
SYNE1-224ENST00000478916 PDILTQ8N807 584 aa10.58□□□□□ -0.72
SYNE1-224ENST00000478916 NFXL1Q6ZNB6 911 aa10.57□□□□□ -0.72
SYNE1-224ENST00000478916 HFM1A2PYH4 1435 aa10.57□□□□□ -0.72
SYNE1-224ENST00000478916 VPS37CA5D8V6 355 aaPredicted RBP10.57□□□□□ -0.72
SYNE1-224ENST00000478916 EXOC6Q8TAG9 804 aa10.57□□□□□ -0.72
SYNE1-224ENST00000478916 SCAPERQ9BY12 1400 aa10.57□□□□□ -0.72
SYNE1-224ENST00000478916 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.57□□□□□ -0.72
SYNE1-224ENST00000478916 ANKLE2Q86XL3 938 aa10.57□□□□□ -0.72
SYNE1-224ENST00000478916 HMGXB3Q12766 1538 aa10.57□□□□□ -0.72
SYNE1-224ENST00000478916 CCDC43Q96MW1 224 aaKnown RBP10.57□□□□□ -0.72
SYNE1-224ENST00000478916 AIMP1Q12904 312 aaKnown RBP10.56□□□□□ -0.72
SYNE1-224ENST00000478916 C9orf84Q5VXU9 1444 aa10.56□□□□□ -0.72
SYNE1-224ENST00000478916 RRP9O43818 475 aaKnown RBP10.56□□□□□ -0.72
SYNE1-224ENST00000478916 DYDC1Q8WWB3 177 aa10.56□□□□□ -0.72
SYNE1-224ENST00000478916 SLC52A1Q9NWF4 448 aa10.56□□□□□ -0.72
SYNE1-224ENST00000478916 TATP17735 454 aaPredicted RBP10.56□□□□□ -0.72
SYNE1-224ENST00000478916 EPS15P42566 896 aa10.56□□□□□ -0.72
SYNE1-224ENST00000478916 GOLGA6L10A6NI86 522 aa10.56□□□□□ -0.72
SYNE1-224ENST00000478916 NESP48681 1621 aa10.55□□□□□ -0.72
SYNE1-224ENST00000478916 OFD1O75665 1012 aa10.55□□□□□ -0.72
SYNE1-224ENST00000478916 UBTFL1P0CB47 393 aaPredicted RBP10.55□□□□□ -0.72
SYNE1-224ENST00000478916 INTS3Q68E01 1043 aaKnown RBP10.55□□□□□ -0.72
SYNE1-224ENST00000478916 STRN4Q9NRL3 753 aa10.55□□□□□ -0.72
SYNE1-224ENST00000478916 TOPBP1Q92547 1522 aa10.55□□□□□ -0.72
SYNE1-224ENST00000478916 ERLIN2O94905 339 aa10.55□□□□□ -0.72
SYNE1-224ENST00000478916 AAMPQ13685 434 aa10.55□□□□□ -0.72
SYNE1-224ENST00000478916 SMARCE1Q969G3 411 aa10.55□□□□□ -0.72
SYNE1-224ENST00000478916 SKIDA1Q1XH10 827 aa10.55□□□□□ -0.72
SYNE1-224ENST00000478916 CCDC30Q5VVM6 783 aa10.55□□□□□ -0.72
SYNE1-224ENST00000478916 PLIN1O60240 522 aa10.54□□□□□ -0.72
SYNE1-224ENST00000478916 NEUROD6Q96NK8 337 aa10.54□□□□□ -0.72
SYNE1-224ENST00000478916 PRAM1Q96QH2 718 aa10.54□□□□□ -0.72
SYNE1-224ENST00000478916 TRIM5Q9C035 493 aa10.54□□□□□ -0.72
SYNE1-224ENST00000478916 EIF3JO75822 258 aaKnown RBP10.54□□□□□ -0.72
SYNE1-224ENST00000478916 HMGB2P26583 209 aaKnown RBP10.54□□□□□ -0.72
SYNE1-224ENST00000478916 SAFBQ15424 915 aaKnown RBP eCLIP10.54□□□□□ -0.72
SYNE1-224ENST00000478916 ZNF692Q9BU19 519 aaPredicted RBP10.54□□□□□ -0.72
SYNE1-224ENST00000478916 TSPY26PQ9H489 355 aa10.54□□□□□ -0.72
SYNE1-224ENST00000478916 TRAK2O60296 914 aa10.54□□□□□ -0.72
SYNE1-224ENST00000478916 CCDC7Q96M83 1385 aa10.54□□□□□ -0.72
SYNE1-224ENST00000478916 NINLQ9Y2I6 1382 aa10.54□□□□□ -0.72
SYNE1-224ENST00000478916 DHX8Q14562 1220 aaKnown RBP10.54□□□□□ -0.72
SYNE1-224ENST00000478916 CCDC27Q2M243 656 aa10.54□□□□□ -0.72
SYNE1-224ENST00000478916 TTLL5Q6EMB2 1281 aa10.53□□□□□ -0.72
SYNE1-224ENST00000478916 RBM42Q9BTD8 480 aaKnown RBP10.53□□□□□ -0.72
SYNE1-224ENST00000478916 RALYLQ86SE5 291 aaKnown RBP10.53□□□□□ -0.72
SYNE1-224ENST00000478916 ZFYVE27Q5T4F4 411 aa10.53□□□□□ -0.72
SYNE1-224ENST00000478916 TROQ12816 1431 aaPredicted RBP10.53□□□□□ -0.72
SYNE1-224ENST00000478916 MBD3O95983 291 aa10.53□□□□□ -0.72
SYNE1-224ENST00000478916 C22orf23Q9BZE7 217 aa10.53□□□□□ -0.72
SYNE1-224ENST00000478916 NEFHP12036 1026 aa10.52□□□□□ -0.72
SYNE1-224ENST00000478916 WASHC4Q2M389 1173 aa10.52□□□□□ -0.72
SYNE1-224ENST00000478916 CFAP70Q5T0N1 1121 aa10.52□□□□□ -0.72
SYNE1-224ENST00000478916 TBC1D2BQ9UPU7 963 aa10.52□□□□□ -0.72
SYNE1-224ENST00000478916 KIF7Q2M1P5 1343 aa10.52□□□□□ -0.72
SYNE1-224ENST00000478916 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.52□□□□□ -0.73
SYNE1-224ENST00000478916 KRI1Q8N9T8 703 aaKnown RBP10.52□□□□□ -0.73
SYNE1-224ENST00000478916 RNF214Q8ND24 703 aa10.52□□□□□ -0.73
SYNE1-224ENST00000478916 CNTLNQ9NXG0 1405 aa10.52□□□□□ -0.73
SYNE1-224ENST00000478916 DNMBPQ6XZF7 1577 aa10.52□□□□□ -0.73
SYNE1-224ENST00000478916 FILIP1LQ4L180 1135 aa10.52□□□□□ -0.73
SYNE1-224ENST00000478916 TOM1L2Q6ZVM7 507 aa10.52□□□□□ -0.73
SYNE1-224ENST00000478916 ANKRD18AQ8IVF6 992 aa10.51□□□□□ -0.73
SYNE1-224ENST00000478916 SPG7Q9UQ90 795 aa10.51□□□□□ -0.73
SYNE1-224ENST00000478916 RPGRIP1LQ68CZ1 1315 aa10.51□□□□□ -0.73
SYNE1-224ENST00000478916 SMC2O95347 1197 aa10.51□□□□□ -0.73
SYNE1-224ENST00000478916 SDF4Q9BRK5 362 aa10.51□□□□□ -0.73
SYNE1-224ENST00000478916 BRMS1Q9HCU9 246 aa10.51□□□□□ -0.73
SYNE1-224ENST00000478916 GIMAP7Q8NHV1 300 aa10.51□□□□□ -0.73
SYNE1-224ENST00000478916 NUTM2BA6NNL0 878 aaPredicted RBP10.51□□□□□ -0.73
SYNE1-224ENST00000478916 NUTM2EB1AL46 878 aaPredicted RBP10.51□□□□□ -0.73
SYNE1-224ENST00000478916 CAVIN1Q6NZI2 390 aaKnown RBP10.51□□□□□ -0.73
SYNE1-224ENST00000478916 NUTM2AQ8IVF1 878 aaPredicted RBP10.51□□□□□ -0.73
SYNE1-224ENST00000478916 ERLIN1O75477 346 aa10.51□□□□□ -0.73
SYNE1-224ENST00000478916 GNAI3P08754 354 aa10.51□□□□□ -0.73
SYNE1-224ENST00000478916 PRKCSHP14314 528 aaPredicted RBP10.51□□□□□ -0.73
SYNE1-224ENST00000478916 SEPT7Q16181 437 aaKnown RBP10.51□□□□□ -0.73
SYNE1-224ENST00000478916 BRPF3Q9ULD4 1205 aa10.51□□□□□ -0.73
SYNE1-224ENST00000478916 PNISRQ8TF01 805 aaKnown RBP10.51□□□□□ -0.73
SYNE1-224ENST00000478916 POLA1P09884 1462 aaPredicted RBP10.51□□□□□ -0.73
SYNE1-224ENST00000478916 UQCRHLA0A096LP55 91 aa10.51□□□□□ -0.73
SYNE1-224ENST00000478916 UQCRHP07919 91 aa10.51□□□□□ -0.73
SYNE1-224ENST00000478916 FYB1O15117 783 aa10.5□□□□□ -0.73
SYNE1-224ENST00000478916 MTHFSP49914 203 aa10.5□□□□□ -0.73
SYNE1-224ENST00000478916 CNKSR2Q8WXI2 1034 aa10.5□□□□□ -0.73
SYNE1-224ENST00000478916 CDK19Q9BWU1 502 aa10.5□□□□□ -0.73
SYNE1-224ENST00000478916 RTEL1-TNFRSF6BF6WH68 1400 aa10.5□□□□□ -0.73
SYNE1-224ENST00000478916 SLC3A2P08195 630 aaKnown RBP10.5□□□□□ -0.73
SYNE1-224ENST00000478916 CABP4P57796 275 aa10.5□□□□□ -0.73
SYNE1-224ENST00000478916 RABEP1Q15276 862 aa10.5□□□□□ -0.73
SYNE1-224ENST00000478916 XBP1P17861 261 aa10.5□□□□□ -0.73
SYNE1-224ENST00000478916 GNL3LQ9NVN8 582 aaKnown RBP10.5□□□□□ -0.73
SYNE1-224ENST00000478916 CCDC112Q8NEF3 446 aa10.5□□□□□ -0.73
SYNE1-224ENST00000478916 BRD4O60885 1362 aaPredicted RBP10.49□□□□□ -0.73
SYNE1-224ENST00000478916 SAMD1Q6SPF0 538 aaPredicted RBP10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms