RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 TEX2Q8IWB9 1127 aa10.65□□□□□ -0.7
COL6A3-210ENST00000473258 GPATCH3Q96I76 525 aa10.65□□□□□ -0.7
COL6A3-210ENST00000473258 PLIN1O60240 522 aa10.65□□□□□ -0.71
COL6A3-210ENST00000473258 CCDC47Q96A33 483 aaKnown RBP10.65□□□□□ -0.71
COL6A3-210ENST00000473258 SMC4Q9NTJ3 1288 aa10.65□□□□□ -0.71
COL6A3-210ENST00000473258 POTEB2H3BUK9 544 aa10.64□□□□□ -0.71
COL6A3-210ENST00000473258 SPECC1LQ69YQ0 1117 aa10.64□□□□□ -0.71
COL6A3-210ENST00000473258 PPP2R5AQ15172 486 aa10.64□□□□□ -0.71
COL6A3-210ENST00000473258 PAXBP1Q9Y5B6 917 aa10.64□□□□□ -0.71
COL6A3-210ENST00000473258 ANKRD62A6NC57 917 aa10.63□□□□□ -0.71
COL6A3-210ENST00000473258 CCDC160A6NGH7 325 aa10.63□□□□□ -0.71
COL6A3-210ENST00000473258 HSP90AB2PQ58FF8 381 aa10.63□□□□□ -0.71
COL6A3-210ENST00000473258 ZNF853P0CG23 659 aa10.63□□□□□ -0.71
COL6A3-210ENST00000473258 OTUD6BQ8N6M0 293 aa10.63□□□□□ -0.71
COL6A3-210ENST00000473258 BAZ1BQ9UIG0 1483 aaKnown RBP10.63□□□□□ -0.71
COL6A3-210ENST00000473258 URI1O94763 535 aaPredicted RBP10.63□□□□□ -0.71
COL6A3-210ENST00000473258 SH3BGRP55822 239 aaPredicted RBP10.63□□□□□ -0.71
COL6A3-210ENST00000473258 FEZ2Q9UHY8 353 aaPredicted RBP10.63□□□□□ -0.71
COL6A3-210ENST00000473258 SMC1AQ14683 1233 aaKnown RBP10.63□□□□□ -0.71
COL6A3-210ENST00000473258 KIF4AO95239 1232 aa10.63□□□□□ -0.71
COL6A3-210ENST00000473258 ZBTB17Q13105 803 aa10.63□□□□□ -0.71
COL6A3-210ENST00000473258 ANKRD45Q5TZF3 282 aa10.63□□□□□ -0.71
COL6A3-210ENST00000473258 FILIP1LQ4L180 1135 aa10.62□□□□□ -0.71
COL6A3-210ENST00000473258 KINO60870 393 aaKnown RBP10.62□□□□□ -0.71
COL6A3-210ENST00000473258 SYCP1Q15431 976 aa10.62□□□□□ -0.71
COL6A3-210ENST00000473258 V9GYY5 206 aaPredicted RBP10.62□□□□□ -0.71
COL6A3-210ENST00000473258 C16orf45Q96MC5 204 aaPredicted RBP10.62□□□□□ -0.71
COL6A3-210ENST00000473258 MYO15BQ96JP2 1530 aa10.61□□□□□ -0.71
COL6A3-210ENST00000473258 HMGB1P1B2RPK0 211 aaPredicted RBP10.61□□□□□ -0.71
COL6A3-210ENST00000473258 MSL1Q68DK7 614 aa10.61□□□□□ -0.71
COL6A3-210ENST00000473258 FMNL2Q96PY5 1086 aa10.61□□□□□ -0.71
COL6A3-210ENST00000473258 PHLDB1Q86UU1 1377 aa10.61□□□□□ -0.71
COL6A3-210ENST00000473258 SCLT1Q96NL6 688 aa10.61□□□□□ -0.71
COL6A3-210ENST00000473258 NUCKS1Q9H1E3 243 aaKnown RBP10.61□□□□□ -0.71
COL6A3-210ENST00000473258 KIF3BO15066 747 aa10.61□□□□□ -0.71
COL6A3-210ENST00000473258 CCDC6Q16204 474 aa10.61□□□□□ -0.71
COL6A3-210ENST00000473258 DNAJC21Q5F1R6 531 aaKnown RBP10.61□□□□□ -0.71
COL6A3-210ENST00000473258 KIF7Q2M1P5 1343 aa10.61□□□□□ -0.71
COL6A3-210ENST00000473258 TSPY4P0CV99 314 aa10.61□□□□□ -0.71
COL6A3-210ENST00000473258 TSPY10P0CW01 314 aa10.61□□□□□ -0.71
COL6A3-210ENST00000473258 KRBA2Q6ZNG9 492 aa10.61□□□□□ -0.71
COL6A3-210ENST00000473258 ABCC9O60706 1549 aa10.6□□□□□ -0.71
COL6A3-210ENST00000473258 SOX12O15370 315 aa10.6□□□□□ -0.71
COL6A3-210ENST00000473258 WHAMMP3Q1A5X7 153 aa10.6□□□□□ -0.71
COL6A3-210ENST00000473258 UTP14CQ5TAP6 766 aaKnown RBP10.6□□□□□ -0.71
COL6A3-210ENST00000473258 EFCC1Q9HA90 598 aa10.6□□□□□ -0.71
COL6A3-210ENST00000473258 CWC22Q9HCG8 908 aaKnown RBP10.6□□□□□ -0.71
COL6A3-210ENST00000473258 RFC1P35251 1148 aaPredicted RBP10.6□□□□□ -0.71
COL6A3-210ENST00000473258 ERC1Q8IUD2 1116 aa10.6□□□□□ -0.71
COL6A3-210ENST00000473258 FBF1Q8TES7 1133 aa10.6□□□□□ -0.71
COL6A3-210ENST00000473258 ZKSCAN1P17029 563 aaPredicted RBP10.6□□□□□ -0.71
COL6A3-210ENST00000473258 AKAP17AQ02040 695 aaKnown RBP10.6□□□□□ -0.71
COL6A3-210ENST00000473258 SH2D4BQ5SQS7 431 aa10.6□□□□□ -0.71
COL6A3-210ENST00000473258 CCDC172P0C7W6 258 aa10.59□□□□□ -0.71
COL6A3-210ENST00000473258 PHF23Q9BUL5 403 aaPredicted RBP10.59□□□□□ -0.71
COL6A3-210ENST00000473258 ZSCAN12O43309 604 aa10.59□□□□□ -0.71
COL6A3-210ENST00000473258 SERPINC1P01008 464 aa10.59□□□□□ -0.71
COL6A3-210ENST00000473258 TERF1P54274 439 aa10.59□□□□□ -0.71
COL6A3-210ENST00000473258 CPLX2Q6PUV4 134 aaKnown RBP10.59□□□□□ -0.71
COL6A3-210ENST00000473258 ZNF397Q8NF99 534 aaPredicted RBP10.59□□□□□ -0.71
COL6A3-210ENST00000473258 ARFGAP3Q9NP61 516 aa10.59□□□□□ -0.71
COL6A3-210ENST00000473258 LUC7L2Q9Y383 392 aaKnown RBP10.59□□□□□ -0.71
COL6A3-210ENST00000473258 DDX46Q7L014 1031 aaKnown RBP10.59□□□□□ -0.71
COL6A3-210ENST00000473258 CCDC148Q8NFR7 591 aa10.59□□□□□ -0.71
COL6A3-210ENST00000473258 NAP1L3Q99457 506 aaPredicted RBP10.59□□□□□ -0.71
COL6A3-210ENST00000473258 TERF2IPQ9NYB0 399 aa10.59□□□□□ -0.71
COL6A3-210ENST00000473258 TRIM29Q14134 588 aa10.59□□□□□ -0.71
COL6A3-210ENST00000473258 PPFIBP1Q86W92 1011 aa10.59□□□□□ -0.71
COL6A3-210ENST00000473258 CBFA2T2O43439 604 aa10.58□□□□□ -0.72
COL6A3-210ENST00000473258 C6orf163Q5TEZ5 329 aa10.58□□□□□ -0.72
COL6A3-210ENST00000473258 XRCC6P12956 609 aaKnown RBP eCLIP10.58□□□□□ -0.72
COL6A3-210ENST00000473258 LMOD2Q6P5Q4 547 aa10.58□□□□□ -0.72
COL6A3-210ENST00000473258 HYPKQ9NX55 129 aa10.58□□□□□ -0.72
COL6A3-210ENST00000473258 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.58□□□□□ -0.72
COL6A3-210ENST00000473258 A0A0G2JS52 829 aa10.58□□□□□ -0.72
COL6A3-210ENST00000473258 LMNTD2Q8IXW0 634 aa10.58□□□□□ -0.72
COL6A3-210ENST00000473258 RILPL2Q969X0 211 aa10.58□□□□□ -0.72
COL6A3-210ENST00000473258 CCDC114Q96M63 670 aa10.58□□□□□ -0.72
COL6A3-210ENST00000473258 NEMFO60524 1076 aa10.58□□□□□ -0.72
COL6A3-210ENST00000473258 INTS3Q68E01 1043 aaKnown RBP10.58□□□□□ -0.72
COL6A3-210ENST00000473258 CCDC121Q6ZUS5 278 aa10.58□□□□□ -0.72
COL6A3-210ENST00000473258 SYCE3A1L190 88 aa10.57□□□□□ -0.72
COL6A3-210ENST00000473258 MCM2P49736 904 aa10.57□□□□□ -0.72
COL6A3-210ENST00000473258 DMTNQ08495 405 aa10.57□□□□□ -0.72
COL6A3-210ENST00000473258 ARHGAP29Q52LW3 1261 aa10.57□□□□□ -0.72
COL6A3-210ENST00000473258 NLRP13Q86W25 1043 aa10.57□□□□□ -0.72
COL6A3-210ENST00000473258 SRRTQ9BXP5 876 aaKnown RBP10.57□□□□□ -0.72
COL6A3-210ENST00000473258 TNMDQ9H2S6 317 aa10.57□□□□□ -0.72
COL6A3-210ENST00000473258 ARID3CA6NKF2 412 aa10.57□□□□□ -0.72
COL6A3-210ENST00000473258 FIBPO43427 364 aa10.57□□□□□ -0.72
COL6A3-210ENST00000473258 RLBP1P12271 317 aa10.57□□□□□ -0.72
COL6A3-210ENST00000473258 TXLNAP40222 546 aa10.57□□□□□ -0.72
COL6A3-210ENST00000473258 POTEDQ86YR6 584 aa10.57□□□□□ -0.72
COL6A3-210ENST00000473258 SFPQP23246 707 aaKnown RBP eCLIP10.57□□□□□ -0.72
COL6A3-210ENST00000473258 WHAMMQ8TF30 809 aa10.57□□□□□ -0.72
COL6A3-210ENST00000473258 COG6Q9Y2V7 657 aa10.57□□□□□ -0.72
COL6A3-210ENST00000473258 TMF1P82094 1093 aa10.57□□□□□ -0.72
COL6A3-210ENST00000473258 LUC7LQ9NQ29 371 aaKnown RBP10.57□□□□□ -0.72
COL6A3-210ENST00000473258 CLIP1P30622 1438 aa10.56□□□□□ -0.72
COL6A3-210ENST00000473258 ATP2C2O75185 946 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms