RNA–Protein interactions for RNA: ENST00000469439.1

SYNE1-219, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 630 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-219ENST00000469439 ZC3H15Q8WU90 426 aaKnown RBP8.99□□□□□ -0.97
SYNE1-219ENST00000469439 CDK11AQ9UQ88 783 aaPredicted RBP8.99□□□□□ -0.97
SYNE1-219ENST00000469439 CTTNBP2Q8WZ74 1663 aa8.98□□□□□ -0.97
SYNE1-219ENST00000469439 MMP16P51512 607 aa8.98□□□□□ -0.97
SYNE1-219ENST00000469439 TNFRSF10AO00220 468 aa8.97□□□□□ -0.97
SYNE1-219ENST00000469439 KRI1Q8N9T8 703 aaKnown RBP8.97□□□□□ -0.97
SYNE1-219ENST00000469439 VPS8Q8N3P4 1428 aa8.97□□□□□ -0.97
SYNE1-219ENST00000469439 AMHR2Q16671 573 aa8.96□□□□□ -0.98
SYNE1-219ENST00000469439 USB1Q9BQ65 265 aaKnown RBP8.96□□□□□ -0.98
SYNE1-219ENST00000469439 PKD2L1Q9P0L9 805 aa8.96□□□□□ -0.98
SYNE1-219ENST00000469439 GUCA2AQ02747 115 aa8.95□□□□□ -0.98
SYNE1-219ENST00000469439 PRG4Q92954 1404 aaPredicted RBP8.95□□□□□ -0.98
SYNE1-219ENST00000469439 CEP170Q5SW79 1584 aa8.95□□□□□ -0.98
SYNE1-219ENST00000469439 DGAT1O75907 488 aa8.94□□□□□ -0.98
SYNE1-219ENST00000469439 DXOO77932 396 aaKnown RBP8.94□□□□□ -0.98
SYNE1-219ENST00000469439 PKDCCQ504Y2 493 aa8.94□□□□□ -0.98
SYNE1-219ENST00000469439 PTPRGP23470 1445 aa8.94□□□□□ -0.98
SYNE1-219ENST00000469439 ARHGAP35Q9NRY4 1499 aa8.94□□□□□ -0.98
SYNE1-219ENST00000469439 NUTM1Q86Y26 1132 aa8.93□□□□□ -0.98
SYNE1-219ENST00000469439 FAM187AA6NFU0 413 aa8.92□□□□□ -0.98
SYNE1-219ENST00000469439 CD2BP2O95400 341 aaKnown RBP8.92□□□□□ -0.98
SYNE1-219ENST00000469439 SSTR3P32745 418 aaPredicted RBP8.92□□□□□ -0.98
SYNE1-219ENST00000469439 MYT1Q01538 1121 aa8.92□□□□□ -0.98
SYNE1-219ENST00000469439 FOXC1Q12948 553 aa8.92□□□□□ -0.98
SYNE1-219ENST00000469439 TTLL12Q14166 644 aaPredicted RBP8.92□□□□□ -0.98
SYNE1-219ENST00000469439 ATP1B4Q9UN42 357 aaPredicted RBP8.92□□□□□ -0.98
SYNE1-219ENST00000469439 CHD1O14646 1710 aa8.91□□□□□ -0.98
SYNE1-219ENST00000469439 ZBTB24O43167 697 aaPredicted RBP8.91□□□□□ -0.98
SYNE1-219ENST00000469439 GIGYF2Q6Y7W6 1299 aaKnown RBP8.91□□□□□ -0.98
SYNE1-219ENST00000469439 SAMD9Q5K651 1589 aa8.9□□□□□ -0.98
SYNE1-219ENST00000469439 CLASP1Q7Z460 1538 aa8.9□□□□□ -0.98
SYNE1-219ENST00000469439 FYCO1Q9BQS8 1478 aa8.9□□□□□ -0.98
SYNE1-219ENST00000469439 CASKIN1Q8WXD9 1431 aa8.9□□□□□ -0.98
SYNE1-219ENST00000469439 MAP3K1Q13233 1512 aa8.9□□□□□ -0.99
SYNE1-219ENST00000469439 CCDC18Q5T9S5 1454 aa8.89□□□□□ -0.99
SYNE1-219ENST00000469439 TRIM32Q13049 653 aa8.89□□□□□ -0.99
SYNE1-219ENST00000469439 SPIRE2Q8WWL2 714 aa8.89□□□□□ -0.99
SYNE1-219ENST00000469439 SYMPKQ92797 1274 aaKnown RBP8.89□□□□□ -0.99
SYNE1-219ENST00000469439 TOR4AQ9NXH8 423 aa8.89□□□□□ -0.99
SYNE1-219ENST00000469439 ARAP1Q96P48 1450 aa8.89□□□□□ -0.99
SYNE1-219ENST00000469439 FHOD3Q2V2M9 1422 aa8.88□□□□□ -0.99
SYNE1-219ENST00000469439 KIAA0556O60303 1618 aa8.88□□□□□ -0.99
SYNE1-219ENST00000469439 FDX1P10109 184 aa8.88□□□□□ -0.99
SYNE1-219ENST00000469439 JUNDP17535 347 aa8.88□□□□□ -0.99
SYNE1-219ENST00000469439 RETREG3Q86VR2 466 aa8.88□□□□□ -0.99
SYNE1-219ENST00000469439 PCDHGC3Q9UN70 934 aa8.88□□□□□ -0.99
SYNE1-219ENST00000469439 DISP1Q96F81 1524 aa8.88□□□□□ -0.99
SYNE1-219ENST00000469439 SHROOM2Q13796 1616 aa8.87□□□□□ -0.99
SYNE1-219ENST00000469439 PLEKHD1A6NEE1 506 aa8.87□□□□□ -0.99
SYNE1-219ENST00000469439 PARP9Q8IXQ6 854 aa8.87□□□□□ -0.99
SYNE1-219ENST00000469439 UACAQ9BZF9 1416 aa8.87□□□□□ -0.99
SYNE1-219ENST00000469439 WNT7AO00755 349 aa8.86□□□□□ -0.99
SYNE1-219ENST00000469439 TRIM66O15016 1216 aa8.86□□□□□ -0.99
SYNE1-219ENST00000469439 ZNF787Q6DD87 383 aa8.86□□□□□ -0.99
SYNE1-219ENST00000469439 MOXD2PA6NHM9 499 aa8.85□□□□□ -0.99
SYNE1-219ENST00000469439 CYP4X1Q8N118 509 aa8.85□□□□□ -0.99
SYNE1-219ENST00000469439 MTUS2Q5JR59 1369 aa8.85□□□□□ -0.99
SYNE1-219ENST00000469439 HECW1Q76N89 1606 aa8.84□□□□□ -0.99
SYNE1-219ENST00000469439 AVPP01185 164 aa8.84□□□□□ -0.99
SYNE1-219ENST00000469439 NDUFV2P19404 249 aa8.84□□□□□ -0.99
SYNE1-219ENST00000469439 CCDC24Q8N4L8 307 aa8.84□□□□□ -0.99
SYNE1-219ENST00000469439 AK7Q96M32 723 aa8.84□□□□□ -0.99
SYNE1-219ENST00000469439 BEGAINQ9BUH8 593 aa8.84□□□□□ -0.99
SYNE1-219ENST00000469439 UHRF1BP1LA0JNW5 1464 aa8.83□□□□□ -1
SYNE1-219ENST00000469439 TTBK1Q5TCY1 1321 aaPredicted RBP8.83□□□□□ -1
SYNE1-219ENST00000469439 C6orf229H3BNL8 230 aa8.83□□□□□ -1
SYNE1-219ENST00000469439 MS4A1P11836 297 aa8.83□□□□□ -1
SYNE1-219ENST00000469439 CRIPAKQ8N1N5 446 aa8.83□□□□□ -1
SYNE1-219ENST00000469439 AAASQ9NRG9 546 aa8.83□□□□□ -1
SYNE1-219ENST00000469439 ST8SIA5O15466 376 aa8.82□□□□□ -1
SYNE1-219ENST00000469439 NUDT12Q9BQG2 462 aa8.82□□□□□ -1
SYNE1-219ENST00000469439 SKOR1P84550 965 aa8.81□□□□□ -1
SYNE1-219ENST00000469439 MRGPRX2Q96LB1 330 aa8.81□□□□□ -1
SYNE1-219ENST00000469439 WNT7BP56706 349 aa8.8□□□□□ -1
SYNE1-219ENST00000469439 TRIM26Q12899 539 aaPredicted RBP8.8□□□□□ -1
SYNE1-219ENST00000469439 SNIP1Q8TAD8 396 aaKnown RBP8.8□□□□□ -1
SYNE1-219ENST00000469439 TBC1D2Q9BYX2 928 aa8.8□□□□□ -1
SYNE1-219ENST00000469439 RAPGEF6Q8TEU7 1601 aa8.8□□□□□ -1
SYNE1-219ENST00000469439 TTC24A2A3L6 582 aaPredicted RBP8.79□□□□□ -1
SYNE1-219ENST00000469439 GJA5P36382 358 aa8.79□□□□□ -1
SYNE1-219ENST00000469439 MTMR2Q13614 643 aa8.79□□□□□ -1
SYNE1-219ENST00000469439 DIXDC1Q155Q3 683 aa8.79□□□□□ -1
SYNE1-219ENST00000469439 PTPRNQ16849 979 aa8.79□□□□□ -1
SYNE1-219ENST00000469439 RSBN1LQ6PCB5 846 aaPredicted RBP8.79□□□□□ -1
SYNE1-219ENST00000469439 EPRSP07814 1512 aaKnown RBP8.79□□□□□ -1
SYNE1-219ENST00000469439 ABCC2Q92887 1545 aa8.79□□□□□ -1
SYNE1-219ENST00000469439 ACIN1Q9UKV3 1341 aaKnown RBP8.79□□□□□ -1
SYNE1-219ENST00000469439 POTECB2RU33 542 aa8.78□□□□□ -1
SYNE1-219ENST00000469439 CCNYL3P0C7X3 344 aa8.78□□□□□ -1
SYNE1-219ENST00000469439 SMPD1P17405 629 aa8.78□□□□□ -1
SYNE1-219ENST00000469439 CTC1Q2NKJ3 1217 aa8.78□□□□□ -1
SYNE1-219ENST00000469439 PTCRAQ6ISU1 281 aaPredicted RBP8.78□□□□□ -1
SYNE1-219ENST00000469439 PRR7Q8TB68 274 aa8.78□□□□□ -1
SYNE1-219ENST00000469439 ARHGEF11O15085 1522 aa8.78□□□□□ -1
SYNE1-219ENST00000469439 ABCA8O94911 1581 aa8.78□□□□□ -1
SYNE1-219ENST00000469439 PLB1Q6P1J6 1458 aa8.77□□□□□ -1
SYNE1-219ENST00000469439 SPDYE5A6NIY4 337 aa8.77□□□□□ -1.01
SYNE1-219ENST00000469439 SMCPP49901 116 aaPredicted RBP8.77□□□□□ -1.01
SYNE1-219ENST00000469439 PDE4DQ08499 809 aa8.77□□□□□ -1.01
SYNE1-219ENST00000469439 RC3H1Q5TC82 1133 aaKnown RBP8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms