RNA–Protein interactions for RNA: ENST00000467326.5

VPS50-209, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 574 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-209ENST00000467326 PCMTD1Q96MG8 357 aaPredicted RBP8.44□□□□□ -1.06
VPS50-209ENST00000467326 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.44□□□□□ -1.06
VPS50-209ENST00000467326 GMPR2Q9P2T1 348 aaKnown RBP8.44□□□□□ -1.06
VPS50-209ENST00000467326 TTC24A2A3L6 582 aaPredicted RBP8.43□□□□□ -1.06
VPS50-209ENST00000467326 FAM181BA6NEQ2 426 aa8.43□□□□□ -1.06
VPS50-209ENST00000467326 PTPRNQ16849 979 aa8.43□□□□□ -1.06
VPS50-209ENST00000467326 DESI1Q6ICB0 168 aa8.43□□□□□ -1.06
VPS50-209ENST00000467326 PROCA1Q8NCQ7 364 aaPredicted RBP8.43□□□□□ -1.06
VPS50-209ENST00000467326 TSC1Q92574 1164 aa8.43□□□□□ -1.06
VPS50-209ENST00000467326 NUDT12Q9BQG2 462 aa8.43□□□□□ -1.06
VPS50-209ENST00000467326 SENP2Q9HC62 589 aa8.43□□□□□ -1.06
VPS50-209ENST00000467326 CCNYL3P0C7X3 344 aa8.42□□□□□ -1.06
VPS50-209ENST00000467326 HELBQ8NG08 1087 aaPredicted RBP8.42□□□□□ -1.06
VPS50-209ENST00000467326 RTL5Q5HYW3 569 aaPredicted RBP8.41□□□□□ -1.06
VPS50-209ENST00000467326 CCDC24Q8N4L8 307 aa8.41□□□□□ -1.06
VPS50-209ENST00000467326 NFX1Q12986 1120 aaKnown RBP8.4□□□□□ -1.06
VPS50-209ENST00000467326 FBXO31Q5XUX0 539 aaPredicted RBP8.38□□□□□ -1.07
VPS50-209ENST00000467326 PPP2R2DQ66LE6 453 aa8.38□□□□□ -1.07
VPS50-209ENST00000467326 LYPD8Q6UX82 237 aa8.38□□□□□ -1.07
VPS50-209ENST00000467326 KIFC2Q96AC6 838 aa8.38□□□□□ -1.07
VPS50-209ENST00000467326 DACH1Q9UI36 760 aa8.38□□□□□ -1.07
VPS50-209ENST00000467326 TRIM32Q13049 653 aa8.37□□□□□ -1.07
VPS50-209ENST00000467326 SNIP1Q8TAD8 396 aaKnown RBP8.37□□□□□ -1.07
VPS50-209ENST00000467326 PER1O15534 1290 aaPredicted RBP8.36□□□□□ -1.07
VPS50-209ENST00000467326 RFC5P40937 340 aa8.36□□□□□ -1.07
VPS50-209ENST00000467326 WNT7AO00755 349 aa8.35□□□□□ -1.07
VPS50-209ENST00000467326 TERTO14746 1132 aaKnown RBP8.35□□□□□ -1.07
VPS50-209ENST00000467326 SLC16A10Q8TF71 515 aa8.35□□□□□ -1.07
VPS50-209ENST00000467326 EVA1BQ9NVM1 165 aa8.35□□□□□ -1.07
VPS50-209ENST00000467326 F12P00748 615 aaPredicted RBP8.34□□□□□ -1.07
VPS50-209ENST00000467326 CTHP32929 405 aa8.34□□□□□ -1.07
VPS50-209ENST00000467326 KCNH2Q12809 1159 aa8.34□□□□□ -1.07
VPS50-209ENST00000467326 TRIM47Q96LD4 638 aa8.34□□□□□ -1.07
VPS50-209ENST00000467326 UNC93B1Q9H1C4 597 aa8.34□□□□□ -1.07
VPS50-209ENST00000467326 ATP13A2Q9NQ11 1180 aa8.34□□□□□ -1.07
VPS50-209ENST00000467326 MAP10Q9P2G4 905 aa8.34□□□□□ -1.07
VPS50-209ENST00000467326 AP1G2O75843 785 aa8.33□□□□□ -1.08
VPS50-209ENST00000467326 PTCRAQ6ISU1 281 aaPredicted RBP8.33□□□□□ -1.08
VPS50-209ENST00000467326 USP17L8P0C7I0 530 aa8.32□□□□□ -1.08
VPS50-209ENST00000467326 CTDSPL2Q05D32 466 aa8.32□□□□□ -1.08
VPS50-209ENST00000467326 LCE2CQ5TA81 110 aa8.32□□□□□ -1.08
VPS50-209ENST00000467326 LRRN4Q8WUT4 740 aa8.3□□□□□ -1.08
VPS50-209ENST00000467326 SMPD1P17405 629 aa8.29□□□□□ -1.08
VPS50-209ENST00000467326 WNT7BP56706 349 aa8.29□□□□□ -1.08
VPS50-209ENST00000467326 LINC01559Q495D7 138 aa8.29□□□□□ -1.08
VPS50-209ENST00000467326 TMEM259Q4ZIN3 620 aa8.29□□□□□ -1.08
VPS50-209ENST00000467326 SNRPBP14678 240 aaKnown RBP8.27□□□□□ -1.09
VPS50-209ENST00000467326 SKOR1P84550 965 aa8.27□□□□□ -1.09
VPS50-209ENST00000467326 ZNF511Q8NB15 262 aa8.27□□□□□ -1.09
VPS50-209ENST00000467326 HMX1Q9NP08 348 aaPredicted RBP8.27□□□□□ -1.09
VPS50-209ENST00000467326 SH3BP2P78314 561 aa8.26□□□□□ -1.09
VPS50-209ENST00000467326 NBPF14Q5TI25 921 aa8.26□□□□□ -1.09
VPS50-209ENST00000467326 NPAS3Q8IXF0 933 aa8.26□□□□□ -1.09
VPS50-209ENST00000467326 ARMC2Q8NEN0 867 aa8.26□□□□□ -1.09
VPS50-209ENST00000467326 BAP1Q92560 729 aa8.26□□□□□ -1.09
VPS50-209ENST00000467326 MRGPRX2Q96LB1 330 aa8.26□□□□□ -1.09
VPS50-209ENST00000467326 NR6A1Q15406 480 aa8.25□□□□□ -1.09
VPS50-209ENST00000467326 TMEM132AQ24JP5 1023 aa8.24□□□□□ -1.09
VPS50-209ENST00000467326 RC3H1Q5TC82 1133 aaKnown RBP8.24□□□□□ -1.09
VPS50-209ENST00000467326 EHBP1Q8NDI1 1231 aa8.24□□□□□ -1.09
VPS50-209ENST00000467326 IRF7Q92985 503 aa8.24□□□□□ -1.09
VPS50-209ENST00000467326 NXF1Q9UBU9 619 aaKnown RBP8.24□□□□□ -1.09
VPS50-209ENST00000467326 BANK1Q8NDB2 785 aa8.23□□□□□ -1.09
VPS50-209ENST00000467326 J3QL48 77 aa8.22□□□□□ -1.09
VPS50-209ENST00000467326 PNMA1Q8ND90 353 aa8.22□□□□□ -1.09
VPS50-209ENST00000467326 GPKOWQ92917 476 aaPredicted RBP eCLIP8.22□□□□□ -1.09
VPS50-209ENST00000467326 FKBPLQ9UIM3 349 aa8.22□□□□□ -1.09
VPS50-209ENST00000467326 ZC3H4Q9UPT8 1303 aaKnown RBP8.22□□□□□ -1.09
VPS50-209ENST00000467326 AGERQ15109 404 aa8.21□□□□□ -1.1
VPS50-209ENST00000467326 ZSCAN1Q8NBB4 408 aa8.21□□□□□ -1.1
VPS50-209ENST00000467326 MTMR14Q8NCE2 650 aa8.21□□□□□ -1.1
VPS50-209ENST00000467326 EPS8L1Q8TE68 723 aa8.21□□□□□ -1.1
VPS50-209ENST00000467326 APBB1O00213 710 aa8.2□□□□□ -1.1
VPS50-209ENST00000467326 SOCS7O14512 581 aa8.2□□□□□ -1.1
VPS50-209ENST00000467326 BPHLQ86WA6 291 aaPredicted RBP8.2□□□□□ -1.1
VPS50-209ENST00000467326 HPS1Q92902 700 aa8.2□□□□□ -1.1
VPS50-209ENST00000467326 FOXJ1Q92949 421 aa8.2□□□□□ -1.1
VPS50-209ENST00000467326 TRIM34Q9BYJ4 488 aa8.2□□□□□ -1.1
VPS50-209ENST00000467326 SH3BP5LQ7L8J4 393 aa8.19□□□□□ -1.1
VPS50-209ENST00000467326 GJD4Q96KN9 370 aaPredicted RBP8.19□□□□□ -1.1
VPS50-209ENST00000467326 TLL2Q9Y6L7 1015 aa8.19□□□□□ -1.1
VPS50-209ENST00000467326 VARSP26640 1264 aaKnown RBP8.18□□□□□ -1.1
VPS50-209ENST00000467326 FAM174AQ8TBP5 190 aa8.18□□□□□ -1.1
VPS50-209ENST00000467326 SNRKQ9NRH2 765 aa8.18□□□□□ -1.1
VPS50-209ENST00000467326 MAGEB6P1A0A0J9YX57 407 aa8.17□□□□□ -1.1
VPS50-209ENST00000467326 C4orf48Q5BLP8 95 aa8.17□□□□□ -1.1
VPS50-209ENST00000467326 PDXDC2PQ6P474 469 aa8.17□□□□□ -1.1
VPS50-209ENST00000467326 SH3RF1Q7Z6J0 888 aa8.17□□□□□ -1.1
VPS50-209ENST00000467326 CARD14Q9BXL6 1004 aa8.17□□□□□ -1.1
VPS50-209ENST00000467326 ALDH1A1P00352 501 aa8.16□□□□□ -1.1
VPS50-209ENST00000467326 LORP23490 312 aaPredicted RBP8.16□□□□□ -1.1
VPS50-209ENST00000467326 ARHGAP9Q9BRR9 750 aa8.16□□□□□ -1.1
VPS50-209ENST00000467326 C1QTNF2Q9BXJ5 285 aa8.16□□□□□ -1.1
VPS50-209ENST00000467326 NDUFB9Q9Y6M9 179 aa8.16□□□□□ -1.1
VPS50-209ENST00000467326 SIAH2O43255 324 aa8.15□□□□□ -1.1
VPS50-209ENST00000467326 MCM6Q14566 821 aa8.15□□□□□ -1.1
VPS50-209ENST00000467326 SUZ12Q15022 739 aaKnown RBP8.15□□□□□ -1.1
VPS50-209ENST00000467326 WASF2Q9Y6W5 498 aa8.15□□□□□ -1.1
VPS50-209ENST00000467326 GMPRP36959 345 aa8.14□□□□□ -1.11
VPS50-209ENST00000467326 GPSM3Q9Y4H4 160 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms