RNA–Protein interactions for RNA: ENST00000462658.1

UBE4B-204, Transcript of ubiquitination factor E4B, humanhuman

TSL 3

Gene UBE4B, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-204ENST00000462658 IFFO2Q5TF58 517 aa12.36□□□□□ -0.43
UBE4B-204ENST00000462658 CCDC88BA6NC98 1476 aa12.34□□□□□ -0.43
UBE4B-204ENST00000462658 F12P00748 615 aaPredicted RBP12.34□□□□□ -0.43
UBE4B-204ENST00000462658 CTHP32929 405 aa12.34□□□□□ -0.43
UBE4B-204ENST00000462658 GGCXP38435 758 aa12.34□□□□□ -0.43
UBE4B-204ENST00000462658 NR6A1Q15406 480 aa12.34□□□□□ -0.43
UBE4B-204ENST00000462658 PLA2G2CQ5R387 149 aa12.33□□□□□ -0.44
UBE4B-204ENST00000462658 PTCRAQ6ISU1 281 aaPredicted RBP12.33□□□□□ -0.44
UBE4B-204ENST00000462658 GJD4Q96KN9 370 aaPredicted RBP12.33□□□□□ -0.44
UBE4B-204ENST00000462658 TRIM34Q9BYJ4 488 aa12.33□□□□□ -0.44
UBE4B-204ENST00000462658 EVA1BQ9NVM1 165 aa12.33□□□□□ -0.44
UBE4B-204ENST00000462658 KCNH2Q12809 1159 aa12.31□□□□□ -0.44
UBE4B-204ENST00000462658 ANKLE1Q8NAG6 615 aa12.31□□□□□ -0.44
UBE4B-204ENST00000462658 KIF21AQ7Z4S6 1674 aa12.3□□□□□ -0.44
UBE4B-204ENST00000462658 A0A0G2JS52 829 aa12.3□□□□□ -0.44
UBE4B-204ENST00000462658 POM121Q96HA1 1249 aa12.3□□□□□ -0.44
UBE4B-204ENST00000462658 THOC2Q8NI27 1593 aaKnown RBP12.29□□□□□ -0.44
UBE4B-204ENST00000462658 LAMC3Q9Y6N6 1575 aa12.29□□□□□ -0.44
UBE4B-204ENST00000462658 UBTFP17480 764 aaKnown RBP12.28□□□□□ -0.44
UBE4B-204ENST00000462658 TBC1D2BQ9UPU7 963 aa12.27□□□□□ -0.45
UBE4B-204ENST00000462658 C14orf37Q86TY3 774 aa12.26□□□□□ -0.45
UBE4B-204ENST00000462658 CLUAP1Q96AJ1 413 aa12.26□□□□□ -0.45
UBE4B-204ENST00000462658 UNC93B1Q9H1C4 597 aa12.26□□□□□ -0.45
UBE4B-204ENST00000462658 GDPD2Q9HCC8 539 aa12.26□□□□□ -0.45
UBE4B-204ENST00000462658 SOCS7O14512 581 aa12.25□□□□□ -0.45
UBE4B-204ENST00000462658 EMID1Q96A84 441 aaPredicted RBP12.25□□□□□ -0.45
UBE4B-204ENST00000462658 COG6Q9Y2V7 657 aa12.25□□□□□ -0.45
UBE4B-204ENST00000462658 ERCC6Q03468 1493 aa12.25□□□□□ -0.45
UBE4B-204ENST00000462658 CADPSQ9ULU8 1353 aa12.24□□□□□ -0.45
UBE4B-204ENST00000462658 TIMELESSQ9UNS1 1208 aa12.24□□□□□ -0.45
UBE4B-204ENST00000462658 LIAT1Q6ZQX7 453 aa12.23□□□□□ -0.45
UBE4B-204ENST00000462658 NDUFB9Q9Y6M9 179 aa12.23□□□□□ -0.45
UBE4B-204ENST00000462658 APBB1O00213 710 aa12.22□□□□□ -0.45
UBE4B-204ENST00000462658 GPR37L1O60883 481 aa12.22□□□□□ -0.45
UBE4B-204ENST00000462658 ZBTB24O43167 697 aaPredicted RBP12.21□□□□□ -0.45
UBE4B-204ENST00000462658 ABL2P42684 1182 aa12.21□□□□□ -0.45
UBE4B-204ENST00000462658 LINC01559Q495D7 138 aa12.21□□□□□ -0.45
UBE4B-204ENST00000462658 BAP1Q92560 729 aa12.21□□□□□ -0.45
UBE4B-204ENST00000462658 FKBPLQ9UIM3 349 aa12.21□□□□□ -0.45
UBE4B-204ENST00000462658 CUX2O14529 1486 aa12.2□□□□□ -0.46
UBE4B-204ENST00000462658 CFTRP13569 1480 aa12.2□□□□□ -0.46
UBE4B-204ENST00000462658 RAD21O60216 631 aa12.19□□□□□ -0.46
UBE4B-204ENST00000462658 PRM3Q9NNZ6 103 aa12.18□□□□□ -0.46
UBE4B-204ENST00000462658 SLC19A1P41440 591 aa12.17□□□□□ -0.46
UBE4B-204ENST00000462658 TRIM32Q13049 653 aa12.17□□□□□ -0.46
UBE4B-204ENST00000462658 IRF5Q13568 498 aa12.16□□□□□ -0.46
UBE4B-204ENST00000462658 ARMC2Q8NEN0 867 aa12.16□□□□□ -0.46
UBE4B-204ENST00000462658 ZMYND15Q9H091 742 aa12.16□□□□□ -0.46
UBE4B-204ENST00000462658 RPIAP49247 311 aa12.15□□□□□ -0.46
UBE4B-204ENST00000462658 PNMA1Q8ND90 353 aa12.15□□□□□ -0.46
UBE4B-204ENST00000462658 PRKD2Q9BZL6 878 aa12.15□□□□□ -0.46
UBE4B-204ENST00000462658 PDS5BQ9NTI5 1447 aa12.14□□□□□ -0.47
UBE4B-204ENST00000462658 SKOR1P84550 965 aa12.14□□□□□ -0.47
UBE4B-204ENST00000462658 ZNF511Q8NB15 262 aa12.14□□□□□ -0.47
UBE4B-204ENST00000462658 FOXJ1Q92949 421 aa12.14□□□□□ -0.47
UBE4B-204ENST00000462658 SH3BP2P78314 561 aa12.13□□□□□ -0.47
UBE4B-204ENST00000462658 NBPF14Q5TI25 921 aa12.13□□□□□ -0.47
UBE4B-204ENST00000462658 PRDM2Q13029 1718 aa12.13□□□□□ -0.47
UBE4B-204ENST00000462658 WDR62O43379 1518 aa12.12□□□□□ -0.47
UBE4B-204ENST00000462658 A6NJR5 290 aa12.12□□□□□ -0.47
UBE4B-204ENST00000462658 ZC3H4Q9UPT8 1303 aaKnown RBP12.11□□□□□ -0.47
UBE4B-204ENST00000462658 FANCD2Q9BXW9 1451 aa12.11□□□□□ -0.47
UBE4B-204ENST00000462658 CD2BP2O95400 341 aaKnown RBP12.11□□□□□ -0.47
UBE4B-204ENST00000462658 SPRYD7Q5W111 196 aa12.11□□□□□ -0.47
UBE4B-204ENST00000462658 PROSER2Q86WR7 435 aaPredicted RBP12.11□□□□□ -0.47
UBE4B-204ENST00000462658 MRC2Q9UBG0 1479 aa12.1□□□□□ -0.47
UBE4B-204ENST00000462658 PDXDC2PQ6P474 469 aa12.1□□□□□ -0.47
UBE4B-204ENST00000462658 FNBP4Q8N3X1 1017 aaPredicted RBP12.1□□□□□ -0.47
UBE4B-204ENST00000462658 GPKOWQ92917 476 aaPredicted RBP eCLIP12.1□□□□□ -0.47
UBE4B-204ENST00000462658 OCSTAMPQ9BR26 566 aa12.1□□□□□ -0.47
UBE4B-204ENST00000462658 FBXO45P0C2W1 286 aa12.09□□□□□ -0.47
UBE4B-204ENST00000462658 AGERQ15109 404 aa12.09□□□□□ -0.47
UBE4B-204ENST00000462658 C4orf48Q5BLP8 95 aa12.09□□□□□ -0.47
UBE4B-204ENST00000462658 SH3BP5LQ7L8J4 393 aa12.09□□□□□ -0.47
UBE4B-204ENST00000462658 URB2Q14146 1524 aaKnown RBP12.08□□□□□ -0.48
UBE4B-204ENST00000462658 VAC14Q08AM6 782 aa12.08□□□□□ -0.48
UBE4B-204ENST00000462658 ARHGAP9Q9BRR9 750 aa12.08□□□□□ -0.48
UBE4B-204ENST00000462658 CARD14Q9BXL6 1004 aa12.08□□□□□ -0.48
UBE4B-204ENST00000462658 CEP164Q9UPV0 1460 aa12.08□□□□□ -0.48
UBE4B-204ENST00000462658 MAGEB6P1A0A0J9YX57 407 aa12.07□□□□□ -0.48
UBE4B-204ENST00000462658 ZBBXA8MT70 800 aa12.07□□□□□ -0.48
UBE4B-204ENST00000462658 WNT7BP56706 349 aa12.07□□□□□ -0.48
UBE4B-204ENST00000462658 PTK2Q05397 1052 aa12.07□□□□□ -0.48
UBE4B-204ENST00000462658 ZNF697Q5TEC3 545 aa12.07□□□□□ -0.48
UBE4B-204ENST00000462658 V9GY48 417 aaPredicted RBP12.07□□□□□ -0.48
UBE4B-204ENST00000462658 ERICH6Q7L0X2 663 aa12.06□□□□□ -0.48
UBE4B-204ENST00000462658 SH3RF1Q7Z6J0 888 aa12.06□□□□□ -0.48
UBE4B-204ENST00000462658 POM121CA8CG34 1229 aa12.05□□□□□ -0.48
UBE4B-204ENST00000462658 TRAK2O60296 914 aa12.05□□□□□ -0.48
UBE4B-204ENST00000462658 RC3H1Q5TC82 1133 aaKnown RBP12.05□□□□□ -0.48
UBE4B-204ENST00000462658 ZNF598Q86UK7 904 aaKnown RBP12.05□□□□□ -0.48
UBE4B-204ENST00000462658 BPHLQ86WA6 291 aaPredicted RBP12.05□□□□□ -0.48
UBE4B-204ENST00000462658 ZNF330Q9Y3S2 320 aaPredicted RBP12.05□□□□□ -0.48
UBE4B-204ENST00000462658 NR1H3Q13133 447 aa12.04□□□□□ -0.48
UBE4B-204ENST00000462658 WWC1Q8IX03 1113 aa12.04□□□□□ -0.48
UBE4B-204ENST00000462658 FOXC1Q12948 553 aa12.03□□□□□ -0.48
UBE4B-204ENST00000462658 ZBTB33Q86T24 672 aa12.03□□□□□ -0.48
UBE4B-204ENST00000462658 EHBP1Q8NDI1 1231 aa12.03□□□□□ -0.48
UBE4B-204ENST00000462658 ADAM32Q8TC27 787 aa12.03□□□□□ -0.48
UBE4B-204ENST00000462658 GPSM3Q9Y4H4 160 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms