RNA–Protein interactions for RNA: ENST00000448078.1

USP49-205, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 3

Gene USP49, Length 480 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-205ENST00000448078 PCDHGC3Q9UN70 934 aa10.28□□□□□ -0.76
USP49-205ENST00000448078 CEP170Q5SW79 1584 aa10.27□□□□□ -0.76
USP49-205ENST00000448078 NUP160Q12769 1436 aa10.27□□□□□ -0.77
USP49-205ENST00000448078 RNF223E7ERA6 249 aa10.27□□□□□ -0.77
USP49-205ENST00000448078 SPTLC1O15269 473 aa10.27□□□□□ -0.77
USP49-205ENST00000448078 SPDYE5A6NIY4 337 aa10.26□□□□□ -0.77
USP49-205ENST00000448078 MSS51Q4VC12 460 aa10.26□□□□□ -0.77
USP49-205ENST00000448078 FAM160A2Q8N612 972 aaPredicted RBP10.26□□□□□ -0.77
USP49-205ENST00000448078 PRR7Q8TB68 274 aa10.26□□□□□ -0.77
USP49-205ENST00000448078 PCMTD1Q96MG8 357 aaPredicted RBP10.26□□□□□ -0.77
USP49-205ENST00000448078 LIMD1Q9UGP4 676 aa10.26□□□□□ -0.77
USP49-205ENST00000448078 PCDHB15Q9Y5E8 787 aa10.26□□□□□ -0.77
USP49-205ENST00000448078 ZBTB24O43167 697 aaPredicted RBP10.25□□□□□ -0.77
USP49-205ENST00000448078 CABLES1Q8TDN4 633 aa10.25□□□□□ -0.77
USP49-205ENST00000448078 FCF1Q9Y324 198 aaKnown RBP10.25□□□□□ -0.77
USP49-205ENST00000448078 GJA5P36382 358 aa10.24□□□□□ -0.77
USP49-205ENST00000448078 SKIV2LQ15477 1246 aaKnown RBP10.24□□□□□ -0.77
USP49-205ENST00000448078 SH3D19Q5HYK7 790 aa10.24□□□□□ -0.77
USP49-205ENST00000448078 PRKD2Q9BZL6 878 aa10.24□□□□□ -0.77
USP49-205ENST00000448078 ERCC6L2Q5T890 1561 aa10.23□□□□□ -0.77
USP49-205ENST00000448078 PLEKHG3A1L390 1219 aa10.23□□□□□ -0.77
USP49-205ENST00000448078 HRCP23327 699 aa10.23□□□□□ -0.77
USP49-205ENST00000448078 ANKLE1Q8NAG6 615 aa10.23□□□□□ -0.77
USP49-205ENST00000448078 PBRM1Q86U86 1689 aa10.22□□□□□ -0.77
USP49-205ENST00000448078 JUNDP17535 347 aa10.22□□□□□ -0.77
USP49-205ENST00000448078 PRPF38BQ5VTL8 546 aaKnown RBP10.22□□□□□ -0.77
USP49-205ENST00000448078 HELBQ8NG08 1087 aaPredicted RBP10.22□□□□□ -0.77
USP49-205ENST00000448078 QPCTQ16769 361 aa10.21□□□□□ -0.77
USP49-205ENST00000448078 KDM6BO15054 1643 aa10.21□□□□□ -0.78
USP49-205ENST00000448078 SLC19A1P41440 591 aa10.2□□□□□ -0.78
USP49-205ENST00000448078 PROCA1Q8NCQ7 364 aaPredicted RBP10.2□□□□□ -0.78
USP49-205ENST00000448078 FBXO41Q8TF61 875 aa10.2□□□□□ -0.78
USP49-205ENST00000448078 TTBK1Q5TCY1 1321 aaPredicted RBP10.19□□□□□ -0.78
USP49-205ENST00000448078 RGS20O76081 388 aa10.19□□□□□ -0.78
USP49-205ENST00000448078 CTHP32929 405 aa10.19□□□□□ -0.78
USP49-205ENST00000448078 NUDT12Q9BQG2 462 aa10.19□□□□□ -0.78
USP49-205ENST00000448078 KIF13AQ9H1H9 1805 aa10.19□□□□□ -0.78
USP49-205ENST00000448078 MAPKBP1O60336 1514 aa10.18□□□□□ -0.78
USP49-205ENST00000448078 ABCA5Q8WWZ7 1642 aa10.18□□□□□ -0.78
USP49-205ENST00000448078 DXOO77932 396 aaKnown RBP10.17□□□□□ -0.78
USP49-205ENST00000448078 MMP16P51512 607 aa10.17□□□□□ -0.78
USP49-205ENST00000448078 PTPRGP23470 1445 aa10.16□□□□□ -0.78
USP49-205ENST00000448078 SHROOM2Q13796 1616 aa10.16□□□□□ -0.78
USP49-205ENST00000448078 CFAP99D6REC4 459 aa10.16□□□□□ -0.78
USP49-205ENST00000448078 ERICH3Q5RHP9 1530 aa10.16□□□□□ -0.78
USP49-205ENST00000448078 ADAMTS12P58397 1594 aa10.15□□□□□ -0.78
USP49-205ENST00000448078 LILRB3O75022 631 aa10.15□□□□□ -0.78
USP49-205ENST00000448078 CD2BP2O95400 341 aaKnown RBP10.15□□□□□ -0.78
USP49-205ENST00000448078 CCNYL3P0C7X3 344 aa10.15□□□□□ -0.78
USP49-205ENST00000448078 TUSC1Q2TAM9 212 aa10.15□□□□□ -0.78
USP49-205ENST00000448078 RTL5Q5HYW3 569 aaPredicted RBP10.15□□□□□ -0.78
USP49-205ENST00000448078 FAM9AQ8IZU1 332 aaPredicted RBP10.15□□□□□ -0.78
USP49-205ENST00000448078 AP1G2O75843 785 aa10.14□□□□□ -0.79
USP49-205ENST00000448078 V9GY48 417 aaPredicted RBP10.14□□□□□ -0.79
USP49-205ENST00000448078 PTPRNQ16849 979 aa10.13□□□□□ -0.79
USP49-205ENST00000448078 CARMIL2Q6F5E8 1435 aa10.13□□□□□ -0.79
USP49-205ENST00000448078 PLB1Q6P1J6 1458 aa10.12□□□□□ -0.79
USP49-205ENST00000448078 PLA2G2CQ5R387 149 aa10.12□□□□□ -0.79
USP49-205ENST00000448078 DIP2BQ9P265 1576 aa10.12□□□□□ -0.79
USP49-205ENST00000448078 ADGRL1O94910 1474 aa10.11□□□□□ -0.79
USP49-205ENST00000448078 SUPT5HO00267 1087 aaKnown RBP10.11□□□□□ -0.79
USP49-205ENST00000448078 ZNF697Q5TEC3 545 aa10.11□□□□□ -0.79
USP49-205ENST00000448078 DESI1Q6ICB0 168 aa10.11□□□□□ -0.79
USP49-205ENST00000448078 LIAT1Q6ZQX7 453 aa10.11□□□□□ -0.79
USP49-205ENST00000448078 GOPCQ9HD26 462 aa10.11□□□□□ -0.79
USP49-205ENST00000448078 RPIAP49247 311 aa10.1□□□□□ -0.79
USP49-205ENST00000448078 FOXC1Q12948 553 aa10.1□□□□□ -0.79
USP49-205ENST00000448078 KIAA0586Q9BVV6 1533 aa10.09□□□□□ -0.79
USP49-205ENST00000448078 TSPOAP1O95153 1857 aa10.09□□□□□ -0.79
USP49-205ENST00000448078 SPRYD7Q5W111 196 aa10.09□□□□□ -0.79
USP49-205ENST00000448078 LYPD8Q6UX82 237 aa10.09□□□□□ -0.79
USP49-205ENST00000448078 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.09□□□□□ -0.79
USP49-205ENST00000448078 IRX2Q9BZI1 471 aaPredicted RBP10.09□□□□□ -0.79
USP49-205ENST00000448078 TRIM32Q13049 653 aa10.08□□□□□ -0.8
USP49-205ENST00000448078 TNIKQ9UKE5 1360 aa10.08□□□□□ -0.8
USP49-205ENST00000448078 TEX14Q8IWB6 1497 aa10.08□□□□□ -0.8
USP49-205ENST00000448078 RFC5P40937 340 aa10.07□□□□□ -0.8
USP49-205ENST00000448078 CTDSPL2Q05D32 466 aa10.07□□□□□ -0.8
USP49-205ENST00000448078 KCNH2Q12809 1159 aa10.07□□□□□ -0.8
USP49-205ENST00000448078 ZNF598Q86UK7 904 aaKnown RBP10.07□□□□□ -0.8
USP49-205ENST00000448078 UNC93B1Q9H1C4 597 aa10.07□□□□□ -0.8
USP49-205ENST00000448078 ASXL2Q76L83 1435 aa10.07□□□□□ -0.8
USP49-205ENST00000448078 PER1O15534 1290 aaPredicted RBP10.06□□□□□ -0.8
USP49-205ENST00000448078 AGERQ15109 404 aa10.06□□□□□ -0.8
USP49-205ENST00000448078 EVA1BQ9NVM1 165 aa10.06□□□□□ -0.8
USP49-205ENST00000448078 PDZRN3Q9UPQ7 1066 aa10.06□□□□□ -0.8
USP49-205ENST00000448078 ADCY10Q96PN6 1610 aa10.05□□□□□ -0.8
USP49-205ENST00000448078 TNFRSF10AO00220 468 aa10.05□□□□□ -0.8
USP49-205ENST00000448078 GFRA3O60609 400 aa10.05□□□□□ -0.8
USP49-205ENST00000448078 LINC01559Q495D7 138 aa10.05□□□□□ -0.8
USP49-205ENST00000448078 MAP10Q9P2G4 905 aa10.05□□□□□ -0.8
USP49-205ENST00000448078 ABCC2Q92887 1545 aa10.04□□□□□ -0.8
USP49-205ENST00000448078 TMEM259Q4ZIN3 620 aa10.04□□□□□ -0.8
USP49-205ENST00000448078 HECW2Q9P2P5 1572 aa10.04□□□□□ -0.8
USP49-205ENST00000448078 TOP2BQ02880 1626 aa10.04□□□□□ -0.8
USP49-205ENST00000448078 PPP2R2DQ66LE6 453 aa10.03□□□□□ -0.8
USP49-205ENST00000448078 PTCRAQ6ISU1 281 aaPredicted RBP10.03□□□□□ -0.8
USP49-205ENST00000448078 PNMA1Q8ND90 353 aa10.03□□□□□ -0.8
USP49-205ENST00000448078 LRRN4Q8WUT4 740 aa10.03□□□□□ -0.8
USP49-205ENST00000448078 IGF1RP08069 1367 aa10.02□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms