RNA–Protein interactions for RNA: ENST00000417040.1

UBR4-205, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-205ENST00000417040 MCM4P33991 863 aa14.4□□□□□ -0.1
UBR4-205ENST00000417040 SERPINC1P01008 464 aa14.4□□□□□ -0.1
UBR4-205ENST00000417040 AMOTL1Q8IY63 956 aa14.4□□□□□ -0.1
UBR4-205ENST00000417040 CCDC112Q8NEF3 446 aa14.4□□□□□ -0.1
UBR4-205ENST00000417040 DDX58O95786 925 aaKnown RBP14.4□□□□□ -0.1
UBR4-205ENST00000417040 EVA1CP58658 441 aa14.4□□□□□ -0.1
UBR4-205ENST00000417040 NOL10Q9BSC4 688 aaKnown RBP14.4□□□□□ -0.1
UBR4-205ENST00000417040 SYCE3A1L190 88 aa14.4□□□□□ -0.1
UBR4-205ENST00000417040 CT47A1Q5JQC4 288 aaPredicted RBP14.4□□□□□ -0.1
UBR4-205ENST00000417040 RRP9O43818 475 aaKnown RBP14.39□□□□□ -0.11
UBR4-205ENST00000417040 HMGN5P82970 282 aaKnown RBP14.39□□□□□ -0.11
UBR4-205ENST00000417040 CDR1P51861 262 aa14.39□□□□□ -0.11
UBR4-205ENST00000417040 VGFO15240 615 aaPredicted RBP14.39□□□□□ -0.11
UBR4-205ENST00000417040 ZFYVE27Q5T4F4 411 aa14.39□□□□□ -0.11
UBR4-205ENST00000417040 TRIM34Q9BYJ4 488 aa14.39□□□□□ -0.11
UBR4-205ENST00000417040 ERCC4Q92889 916 aaPredicted RBP14.39□□□□□ -0.11
UBR4-205ENST00000417040 CAMK4Q16566 473 aa14.38□□□□□ -0.11
UBR4-205ENST00000417040 CCDC192P0DO97 292 aa14.38□□□□□ -0.11
UBR4-205ENST00000417040 RSPH4AQ5TD94 716 aa14.37□□□□□ -0.11
UBR4-205ENST00000417040 OFD1O75665 1012 aa14.37□□□□□ -0.11
UBR4-205ENST00000417040 HSP90AB4PQ58FF6 505 aa14.37□□□□□ -0.11
UBR4-205ENST00000417040 XPCQ01831 940 aaPredicted RBP14.36□□□□□ -0.11
UBR4-205ENST00000417040 TRERF1Q96PN7 1200 aa14.36□□□□□ -0.11
UBR4-205ENST00000417040 STK38Q15208 465 aa14.36□□□□□ -0.11
UBR4-205ENST00000417040 CT47B1P0C2W7 299 aaPredicted RBP14.36□□□□□ -0.11
UBR4-205ENST00000417040 CCDC191Q8NCU4 936 aa14.36□□□□□ -0.11
UBR4-205ENST00000417040 SMG6Q86US8 1419 aaKnown RBP14.35□□□□□ -0.11
UBR4-205ENST00000417040 FGD6Q6ZV73 1430 aa14.35□□□□□ -0.11
UBR4-205ENST00000417040 IBSPP21815 317 aaPredicted RBP14.35□□□□□ -0.11
UBR4-205ENST00000417040 TWISTNBQ3B726 338 aaPredicted RBP14.35□□□□□ -0.11
UBR4-205ENST00000417040 SIL1Q9H173 461 aa14.35□□□□□ -0.11
UBR4-205ENST00000417040 CENPHQ9H3R5 247 aa14.35□□□□□ -0.11
UBR4-205ENST00000417040 PRKAR2BP31323 418 aa14.35□□□□□ -0.11
UBR4-205ENST00000417040 NBPF1Q3BBV0 1214 aa14.35□□□□□ -0.11
UBR4-205ENST00000417040 KIF21BO75037 1637 aa14.35□□□□□ -0.11
UBR4-205ENST00000417040 CHD1LQ86WJ1 897 aa14.35□□□□□ -0.11
UBR4-205ENST00000417040 FAM177BA6PVY3 158 aa14.34□□□□□ -0.11
UBR4-205ENST00000417040 ME1P48163 572 aa14.34□□□□□ -0.11
UBR4-205ENST00000417040 PDCL2Q8N4E4 241 aa14.34□□□□□ -0.11
UBR4-205ENST00000417040 TMX1Q9H3N1 280 aa14.34□□□□□ -0.11
UBR4-205ENST00000417040 SMARCE1Q969G3 411 aa14.34□□□□□ -0.11
UBR4-205ENST00000417040 ODF2Q5BJF6 829 aa14.34□□□□□ -0.11
UBR4-205ENST00000417040 CWC22Q9HCG8 908 aaKnown RBP14.34□□□□□ -0.11
UBR4-205ENST00000417040 PRDM2Q13029 1718 aa14.34□□□□□ -0.11
UBR4-205ENST00000417040 C20orf194Q5TEA3 1177 aa14.34□□□□□ -0.11
UBR4-205ENST00000417040 GCC1Q96CN9 775 aa14.34□□□□□ -0.11
UBR4-205ENST00000417040 CTDP1Q9Y5B0 961 aaPredicted RBP14.34□□□□□ -0.11
UBR4-205ENST00000417040 FILIP1Q7Z7B0 1213 aa14.33□□□□□ -0.11
UBR4-205ENST00000417040 JPH4Q96JJ6 628 aa14.33□□□□□ -0.11
UBR4-205ENST00000417040 BRMS1Q9HCU9 246 aa14.33□□□□□ -0.11
UBR4-205ENST00000417040 DCTN1Q14203 1278 aa14.33□□□□□ -0.12
UBR4-205ENST00000417040 FILIP1LQ4L180 1135 aa14.33□□□□□ -0.12
UBR4-205ENST00000417040 ZNF396Q96N95 335 aaPredicted RBP14.33□□□□□ -0.12
UBR4-205ENST00000417040 AAMPQ13685 434 aa14.33□□□□□ -0.12
UBR4-205ENST00000417040 NBPF8Q3BBV2 869 aa14.33□□□□□ -0.12
UBR4-205ENST00000417040 CCP110O43303 1012 aa14.33□□□□□ -0.12
UBR4-205ENST00000417040 MAGEC2Q9UBF1 373 aaPredicted RBP14.33□□□□□ -0.12
UBR4-205ENST00000417040 ZHX1Q9UKY1 873 aaPredicted RBP14.33□□□□□ -0.12
UBR4-205ENST00000417040 WDR97A6NE52 1622 aa14.32□□□□□ -0.12
UBR4-205ENST00000417040 CLASRPQ8N2M8 674 aaKnown RBP14.32□□□□□ -0.12
UBR4-205ENST00000417040 SLC4A2P04920 1241 aa14.32□□□□□ -0.12
UBR4-205ENST00000417040 PSME1Q06323 249 aa14.32□□□□□ -0.12
UBR4-205ENST00000417040 PDE3AQ14432 1141 aa14.32□□□□□ -0.12
UBR4-205ENST00000417040 LARP1BQ659C4 914 aaKnown RBP14.32□□□□□ -0.12
UBR4-205ENST00000417040 PNISRQ8TF01 805 aaKnown RBP14.32□□□□□ -0.12
UBR4-205ENST00000417040 CCDC43Q96MW1 224 aaKnown RBP14.32□□□□□ -0.12
UBR4-205ENST00000417040 CYP46A1Q9Y6A2 500 aa14.32□□□□□ -0.12
UBR4-205ENST00000417040 SMARCA2P51531 1590 aa14.32□□□□□ -0.12
UBR4-205ENST00000417040 WDR33Q9C0J8 1336 aaKnown RBP14.31□□□□□ -0.12
UBR4-205ENST00000417040 MVPQ14764 893 aaKnown RBP14.31□□□□□ -0.12
UBR4-205ENST00000417040 CCDC102AQ96A19 550 aa14.31□□□□□ -0.12
UBR4-205ENST00000417040 MCM2P49736 904 aa14.31□□□□□ -0.12
UBR4-205ENST00000417040 AEBP1Q8IUX7 1158 aa14.31□□□□□ -0.12
UBR4-205ENST00000417040 GNAI2P04899 355 aa14.31□□□□□ -0.12
UBR4-205ENST00000417040 CWC27Q6UX04 472 aaKnown RBP14.31□□□□□ -0.12
UBR4-205ENST00000417040 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.31□□□□□ -0.122e-6■■■■■ 30.3
UBR4-205ENST00000417040 SPDYE4A6NLX3 237 aa14.3□□□□□ -0.12
UBR4-205ENST00000417040 SPATA32Q96LK8 384 aa14.3□□□□□ -0.12
UBR4-205ENST00000417040 ZSCAN30Q86W11 494 aa14.3□□□□□ -0.12
UBR4-205ENST00000417040 PPFIBP1Q86W92 1011 aa14.3□□□□□ -0.12
UBR4-205ENST00000417040 CCDC30Q5VVM6 783 aa14.29□□□□□ -0.12
UBR4-205ENST00000417040 LRRCC1Q9C099 1032 aa14.29□□□□□ -0.12
UBR4-205ENST00000417040 KIAA0754O94854 1291 aa14.29□□□□□ -0.12
UBR4-205ENST00000417040 LRRC9Q6ZRR7 1453 aa14.29□□□□□ -0.12
UBR4-205ENST00000417040 SMARCA5O60264 1052 aaPredicted RBP14.29□□□□□ -0.12
UBR4-205ENST00000417040 XBP1P17861 261 aa14.29□□□□□ -0.12
UBR4-205ENST00000417040 PDRG1Q9NUG6 133 aa14.29□□□□□ -0.12
UBR4-205ENST00000417040 CFAP70Q5T0N1 1121 aa14.28□□□□□ -0.12
UBR4-205ENST00000417040 JAKMIP1Q96N16 626 aaKnown RBP14.28□□□□□ -0.12
UBR4-205ENST00000417040 CCDC181Q5TID7 509 aa14.28□□□□□ -0.12
UBR4-205ENST00000417040 NUP62CLQ9H1M0 184 aa14.28□□□□□ -0.12
UBR4-205ENST00000417040 MIA2Q96PC5 1412 aa14.28□□□□□ -0.12
UBR4-205ENST00000417040 MYOM3Q5VTT5 1437 aa14.28□□□□□ -0.12
UBR4-205ENST00000417040 DDX54Q8TDD1 881 aaKnown RBP14.28□□□□□ -0.12
UBR4-205ENST00000417040 ZFP91Q96JP5 570 aaPredicted RBP14.28□□□□□ -0.12
UBR4-205ENST00000417040 KRT85P78386 507 aa14.28□□□□□ -0.12
UBR4-205ENST00000417040 LARP6Q9BRS8 491 aaKnown RBP14.28□□□□□ -0.12
UBR4-205ENST00000417040 GNAI3P08754 354 aa14.27□□□□□ -0.12
UBR4-205ENST00000417040 SSFA2P28290 1259 aa14.27□□□□□ -0.12
UBR4-205ENST00000417040 IL1RAPL2Q9NP60 686 aa14.27□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 796 ms