RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 GLMNQ92990 594 aa11.02□□□□□ -0.65
USP40-202ENST00000409945 PTPN5P54829 565 aa11.01□□□□□ -0.65
USP40-202ENST00000409945 ZNF516Q92618 1163 aa11.01□□□□□ -0.65
USP40-202ENST00000409945 PRR14Q9BWN1 585 aa11.01□□□□□ -0.65
USP40-202ENST00000409945 CFTRP13569 1480 aa11□□□□□ -0.65
USP40-202ENST00000409945 DESI1Q6ICB0 168 aa11□□□□□ -0.65
USP40-202ENST00000409945 SALL2Q9Y467 1007 aaPredicted RBP11□□□□□ -0.65
USP40-202ENST00000409945 KIF21AQ7Z4S6 1674 aa11□□□□□ -0.65
USP40-202ENST00000409945 CEP164Q9UPV0 1460 aa10.99□□□□□ -0.65
USP40-202ENST00000409945 F12P00748 615 aaPredicted RBP10.99□□□□□ -0.65
USP40-202ENST00000409945 NECTIN2Q92692 538 aa10.99□□□□□ -0.65
USP40-202ENST00000409945 NR1I2O75469 434 aa10.98□□□□□ -0.65
USP40-202ENST00000409945 FMNL1O95466 1100 aaPredicted RBP10.98□□□□□ -0.65
USP40-202ENST00000409945 MTRQ99707 1265 aa10.98□□□□□ -0.65
USP40-202ENST00000409945 CCDC88BA6NC98 1476 aa10.98□□□□□ -0.65
USP40-202ENST00000409945 SPSB2Q99619 263 aa10.97□□□□□ -0.65
USP40-202ENST00000409945 THOC2Q8NI27 1593 aaKnown RBP10.97□□□□□ -0.65
USP40-202ENST00000409945 FANCD2Q9BXW9 1451 aa10.97□□□□□ -0.65
USP40-202ENST00000409945 MRC2Q9UBG0 1479 aa10.97□□□□□ -0.65
USP40-202ENST00000409945 HDGFL1Q5TGJ6 251 aa10.96□□□□□ -0.65
USP40-202ENST00000409945 NKX2-3Q8TAU0 364 aa10.96□□□□□ -0.65
USP40-202ENST00000409945 CALR3Q96L12 384 aaKnown RBP10.96□□□□□ -0.65
USP40-202ENST00000409945 JUNDP17535 347 aa10.96□□□□□ -0.66
USP40-202ENST00000409945 TJAP1Q5JTD0 557 aa10.96□□□□□ -0.66
USP40-202ENST00000409945 PRDM2Q13029 1718 aa10.94□□□□□ -0.66
USP40-202ENST00000409945 ZPR1O75312 459 aa10.94□□□□□ -0.66
USP40-202ENST00000409945 DXOO77932 396 aaKnown RBP10.94□□□□□ -0.66
USP40-202ENST00000409945 UCN2Q96RP3 112 aa10.93□□□□□ -0.66
USP40-202ENST00000409945 FBXO45P0C2W1 286 aa10.92□□□□□ -0.66
USP40-202ENST00000409945 OCSTAMPQ9BR26 566 aa10.92□□□□□ -0.66
USP40-202ENST00000409945 PTPRNQ16849 979 aa10.92□□□□□ -0.66
USP40-202ENST00000409945 PTCRAQ6ISU1 281 aaPredicted RBP10.92□□□□□ -0.66
USP40-202ENST00000409945 CCDC97Q96F63 343 aaPredicted RBP10.92□□□□□ -0.66
USP40-202ENST00000409945 MSS51Q4VC12 460 aa10.91□□□□□ -0.66
USP40-202ENST00000409945 ALG2Q9H553 416 aa10.91□□□□□ -0.66
USP40-202ENST00000409945 PRM3Q9NNZ6 103 aa10.91□□□□□ -0.66
USP40-202ENST00000409945 WDR62O43379 1518 aa10.9□□□□□ -0.66
USP40-202ENST00000409945 MMP16P51512 607 aa10.9□□□□□ -0.66
USP40-202ENST00000409945 SERPINA10Q9UK55 444 aa10.9□□□□□ -0.66
USP40-202ENST00000409945 FKBPLQ9UIM3 349 aa10.9□□□□□ -0.67
USP40-202ENST00000409945 CTHP32929 405 aa10.89□□□□□ -0.67
USP40-202ENST00000409945 NUDT12Q9BQG2 462 aa10.89□□□□□ -0.67
USP40-202ENST00000409945 CCNYL3P0C7X3 344 aa10.88□□□□□ -0.67
USP40-202ENST00000409945 ADH1BP00325 375 aa10.88□□□□□ -0.67
USP40-202ENST00000409945 EVA1BQ9NVM1 165 aa10.88□□□□□ -0.67
USP40-202ENST00000409945 MYT1LQ9UL68 1186 aa10.87□□□□□ -0.67
USP40-202ENST00000409945 WASHC4Q2M389 1173 aa10.86□□□□□ -0.67
USP40-202ENST00000409945 CFAP70Q5T0N1 1121 aa10.86□□□□□ -0.67
USP40-202ENST00000409945 ABCC8Q09428 1581 aa10.86□□□□□ -0.67
USP40-202ENST00000409945 S1PR4O95977 384 aa10.86□□□□□ -0.67
USP40-202ENST00000409945 PIK3CDO00329 1044 aa10.85□□□□□ -0.67
USP40-202ENST00000409945 RFX1P22670 979 aa10.85□□□□□ -0.67
USP40-202ENST00000409945 WWC1Q8IX03 1113 aa10.85□□□□□ -0.67
USP40-202ENST00000409945 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.84□□□□□ -0.67
USP40-202ENST00000409945 KCNH2Q12809 1159 aa10.84□□□□□ -0.67
USP40-202ENST00000409945 PPEF1O14829 653 aaPredicted RBP10.83□□□□□ -0.68
USP40-202ENST00000409945 NYAP1Q6ZVC0 841 aa10.82□□□□□ -0.68
USP40-202ENST00000409945 CCDC24Q8N4L8 307 aa10.82□□□□□ -0.68
USP40-202ENST00000409945 PPP1R12CQ9BZL4 782 aa10.82□□□□□ -0.68
USP40-202ENST00000409945 IL21Q9HBE4 155 aa10.82□□□□□ -0.68
USP40-202ENST00000409945 PALM3A6NDB9 673 aaPredicted RBP10.82□□□□□ -0.68
USP40-202ENST00000409945 URB2Q14146 1524 aaKnown RBP10.81□□□□□ -0.68
USP40-202ENST00000409945 ZBBXA8MT70 800 aa10.81□□□□□ -0.68
USP40-202ENST00000409945 SRPK2P78362 688 aaKnown RBP10.81□□□□□ -0.68
USP40-202ENST00000409945 NR1H3Q13133 447 aa10.81□□□□□ -0.68
USP40-202ENST00000409945 TBC1D9Q6ZT07 1266 aa10.81□□□□□ -0.68
USP40-202ENST00000409945 SLC6A16Q9GZN6 736 aa10.81□□□□□ -0.68
USP40-202ENST00000409945 UNC93B1Q9H1C4 597 aa10.81□□□□□ -0.68
USP40-202ENST00000409945 CARNS1A5YM72 827 aa10.8□□□□□ -0.68
USP40-202ENST00000409945 RETREG2Q8NC44 543 aa10.8□□□□□ -0.68
USP40-202ENST00000409945 TFIP11Q9UBB9 837 aaKnown RBP10.8□□□□□ -0.68
USP40-202ENST00000409945 FCF1Q9Y324 198 aaKnown RBP10.8□□□□□ -0.68
USP40-202ENST00000409945 PLA2G2CQ5R387 149 aa10.79□□□□□ -0.68
USP40-202ENST00000409945 TRIM26Q12899 539 aaPredicted RBP10.78□□□□□ -0.68
USP40-202ENST00000409945 DNMBPQ6XZF7 1577 aa10.78□□□□□ -0.68
USP40-202ENST00000409945 C4orf48Q5BLP8 95 aa10.78□□□□□ -0.68
USP40-202ENST00000409945 FAM174AQ8TBP5 190 aa10.78□□□□□ -0.68
USP40-202ENST00000409945 TOPBP1Q92547 1522 aa10.77□□□□□ -0.69
USP40-202ENST00000409945 LINC01559Q495D7 138 aa10.77□□□□□ -0.69
USP40-202ENST00000409945 CDCA8Q53HL2 280 aa10.77□□□□□ -0.69
USP40-202ENST00000409945 SPNS2Q8IVW8 549 aa10.77□□□□□ -0.69
USP40-202ENST00000409945 SEMA3FQ13275 785 aa10.76□□□□□ -0.69
USP40-202ENST00000409945 IFT140Q96RY7 1462 aa10.76□□□□□ -0.69
USP40-202ENST00000409945 LMOD1P29536 600 aaPredicted RBP10.75□□□□□ -0.69
USP40-202ENST00000409945 SH3BP5LQ7L8J4 393 aa10.75□□□□□ -0.69
USP40-202ENST00000409945 ADAM32Q8TC27 787 aa10.75□□□□□ -0.69
USP40-202ENST00000409945 BAP1Q92560 729 aa10.75□□□□□ -0.69
USP40-202ENST00000409945 FOXJ1Q92949 421 aa10.75□□□□□ -0.69
USP40-202ENST00000409945 MAFBQ9Y5Q3 323 aaPredicted RBP10.75□□□□□ -0.69
USP40-202ENST00000409945 TSGA10IPQ3SY00 556 aa10.74□□□□□ -0.69
USP40-202ENST00000409945 CARD14Q9BXL6 1004 aa10.74□□□□□ -0.69
USP40-202ENST00000409945 RNF166Q96A37 237 aaPredicted RBP10.74□□□□□ -0.69
USP40-202ENST00000409945 EIF4G2P78344 907 aaKnown RBP eCLIP10.73□□□□□ -0.69
USP40-202ENST00000409945 PDXDC2PQ6P474 469 aa10.73□□□□□ -0.69
USP40-202ENST00000409945 SH3RF1Q7Z6J0 888 aa10.72□□□□□ -0.69
USP40-202ENST00000409945 DEPDC4Q8N2C3 294 aa10.72□□□□□ -0.69
USP40-202ENST00000409945 MAGEB6P1A0A0J9YX57 407 aa10.72□□□□□ -0.69
USP40-202ENST00000409945 RNF223E7ERA6 249 aa10.72□□□□□ -0.69
USP40-202ENST00000409945 ZC3H4Q9UPT8 1303 aaKnown RBP10.71□□□□□ -0.7
USP40-202ENST00000409945 PBXIP1Q96AQ6 731 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms