RNA–Protein interactions for RNA: ENST00000396548.5

TRIM39-204, Transcript of tripartite motif containing 39, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TRIM39, Length 3,198 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-204ENST00000396548 SCAF1Q9H7N4 1312 aaKnown RBP17.14■□□□□ 0.33
TRIM39-204ENST00000396548 TTC21BQ7Z4L5 1316 aa17.14■□□□□ 0.33
TRIM39-204ENST00000396548 OVOS2A0A0J9YW53 1432 aa17.14■□□□□ 0.33
TRIM39-204ENST00000396548 OVOS2Q6IE36 1432 aa17.14■□□□□ 0.33
TRIM39-204ENST00000396548 MAP2P11137 1827 aaKnown RBP17.13■□□□□ 0.33
TRIM39-204ENST00000396548 SMG6Q86US8 1419 aaKnown RBP17.13■□□□□ 0.33
TRIM39-204ENST00000396548 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.13■□□□□ 0.33
TRIM39-204ENST00000396548 KIF1AQ12756 1690 aa17.13■□□□□ 0.33
TRIM39-204ENST00000396548 NME9Q86XW9 330 aa17.12■□□□□ 0.33
TRIM39-204ENST00000396548 C19orf44Q9H6X5 657 aa17.12■□□□□ 0.33
TRIM39-204ENST00000396548 PMFBP1Q8TBY8 1022 aa17.12■□□□□ 0.33
TRIM39-204ENST00000396548 MST1RQ04912 1400 aa17.11■□□□□ 0.33
TRIM39-204ENST00000396548 C1orf167Q5SNV9 1468 aa17.11■□□□□ 0.33
TRIM39-204ENST00000396548 TRPM3Q9HCF6 1732 aaPredicted RBP17.11■□□□□ 0.33
TRIM39-204ENST00000396548 ZRANB1Q9UGI0 708 aa17.11■□□□□ 0.33
TRIM39-204ENST00000396548 AATKQ6ZMQ8 1374 aa17.11■□□□□ 0.33
TRIM39-204ENST00000396548 PNPLA6Q8IY17 1366 aa17.11■□□□□ 0.33
TRIM39-204ENST00000396548 USP31Q70CQ4 1352 aa17.1■□□□□ 0.33
TRIM39-204ENST00000396548 HNRNPUQ00839 825 aaKnown RBP eCLIP17.1■□□□□ 0.33
TRIM39-204ENST00000396548 TTC21AQ8NDW8 1320 aa17.1■□□□□ 0.33
TRIM39-204ENST00000396548 MTHFSP49914 203 aa17.09■□□□□ 0.33
TRIM39-204ENST00000396548 TNNT2P45379 298 aaPredicted RBP17.09■□□□□ 0.33
TRIM39-204ENST00000396548 ZBED9Q6R2W3 1325 aa17.08■□□□□ 0.33
TRIM39-204ENST00000396548 ZNF335Q9H4Z2 1342 aaPredicted RBP17.08■□□□□ 0.33
TRIM39-204ENST00000396548 PHF8Q9UPP1 1060 aa17.08■□□□□ 0.33
TRIM39-204ENST00000396548 ADAMTS8Q9UP79 889 aa17.08■□□□□ 0.32
TRIM39-204ENST00000396548 NGDNQ8NEJ9 315 aaKnown RBP17.06■□□□□ 0.32
TRIM39-204ENST00000396548 PEAK1Q9H792 1746 aa17.06■□□□□ 0.32
TRIM39-204ENST00000396548 POLKQ9UBT6 870 aa17.05■□□□□ 0.32
TRIM39-204ENST00000396548 C14orf37Q86TY3 774 aa17.04■□□□□ 0.32
TRIM39-204ENST00000396548 ORAI2Q96SN7 254 aa17.04■□□□□ 0.32
TRIM39-204ENST00000396548 DMRT2Q9Y5R5 561 aa17.04■□□□□ 0.32
TRIM39-204ENST00000396548 CDK12Q9NYV4 1490 aaPredicted RBP17.04■□□□□ 0.32
TRIM39-204ENST00000396548 COG3Q96JB2 828 aa17.04■□□□□ 0.32
TRIM39-204ENST00000396548 ALS2Q96Q42 1657 aa17.03■□□□□ 0.32
TRIM39-204ENST00000396548 ESCO1Q5FWF5 840 aa17.03■□□□□ 0.32
TRIM39-204ENST00000396548 FBLN1P23142 703 aa17.03■□□□□ 0.32
TRIM39-204ENST00000396548 LTBP4Q8N2S1 1624 aa17.02■□□□□ 0.31
TRIM39-204ENST00000396548 MSH6P52701 1360 aa17.01■□□□□ 0.31
TRIM39-204ENST00000396548 WDR43Q15061 677 aaKnown RBP eCLIP17■□□□□ 0.31
TRIM39-204ENST00000396548 IQSEC2Q5JU85 1478 aa17■□□□□ 0.31
TRIM39-204ENST00000396548 CADPS2Q86UW7 1296 aa16.99■□□□□ 0.31
TRIM39-204ENST00000396548 ATF3P18847 181 aa16.99■□□□□ 0.31
TRIM39-204ENST00000396548 CFAP53Q96M91 514 aa16.99■□□□□ 0.31
TRIM39-204ENST00000396548 NFAT5O94916 1531 aa16.99■□□□□ 0.31
TRIM39-204ENST00000396548 RGPD1P0DJD0 1748 aa16.99■□□□□ 0.31
TRIM39-204ENST00000396548 PHRF1Q9P1Y6 1649 aaKnown RBP16.99■□□□□ 0.31
TRIM39-204ENST00000396548 EMILIN1Q9Y6C2 1016 aa16.98■□□□□ 0.31
TRIM39-204ENST00000396548 SLIT3O75094 1523 aa16.98■□□□□ 0.31
TRIM39-204ENST00000396548 PXDNQ92626 1479 aa16.97■□□□□ 0.31
TRIM39-204ENST00000396548 CRYBG1Q9Y4K1 1723 aa16.97■□□□□ 0.31
TRIM39-204ENST00000396548 LTN1O94822 1766 aa16.96■□□□□ 0.31
TRIM39-204ENST00000396548 RRS1Q15050 365 aaKnown RBP16.95■□□□□ 0.3
TRIM39-204ENST00000396548 FOXO3O43524 673 aa16.95■□□□□ 0.3
TRIM39-204ENST00000396548 PSME1Q06323 249 aa16.95■□□□□ 0.3
TRIM39-204ENST00000396548 ZNF521Q96K83 1311 aa16.94■□□□□ 0.3
TRIM39-204ENST00000396548 IL13P35225 146 aa16.94■□□□□ 0.3
TRIM39-204ENST00000396548 NHSL1Q5SYE7 1610 aa16.93■□□□□ 0.3
TRIM39-204ENST00000396548 ABTB2Q8N961 1025 aa16.93■□□□□ 0.3
TRIM39-204ENST00000396548 PLEKHF1Q96S99 279 aa16.93■□□□□ 0.3
TRIM39-204ENST00000396548 DIAPH1O60610 1272 aaKnown RBP16.93■□□□□ 0.3
TRIM39-204ENST00000396548 SBNO1A3KN83 1393 aa16.92■□□□□ 0.3
TRIM39-204ENST00000396548 MED1Q15648 1581 aaPredicted RBP16.92■□□□□ 0.3
TRIM39-204ENST00000396548 NLRP6P59044 892 aa16.92■□□□□ 0.3
TRIM39-204ENST00000396548 KRT28Q7Z3Y7 464 aa16.92■□□□□ 0.3
TRIM39-204ENST00000396548 USP19O94966 1318 aa16.92■□□□□ 0.3
TRIM39-204ENST00000396548 CCDC146Q8IYE0 955 aa16.91■□□□□ 0.3
TRIM39-204ENST00000396548 KIF24Q5T7B8 1368 aa16.91■□□□□ 0.3
TRIM39-204ENST00000396548 SENP3-EIF4A1A0A087X0R7 540 aa16.91■□□□□ 0.3
TRIM39-204ENST00000396548 BRINP3Q76B58 766 aa16.91■□□□□ 0.3
TRIM39-204ENST00000396548 MAP3K19Q56UN5 1328 aa16.91■□□□□ 0.3
TRIM39-204ENST00000396548 PAK3O75914 559 aaPredicted RBP16.9■□□□□ 0.3
TRIM39-204ENST00000396548 RUNDC1Q96C34 613 aa16.9■□□□□ 0.3
TRIM39-204ENST00000396548 SLAIN2Q9P270 581 aa16.9■□□□□ 0.3
TRIM39-204ENST00000396548 NCBP3Q53F19 620 aaKnown RBP16.89■□□□□ 0.29
TRIM39-204ENST00000396548 XPCQ01831 940 aaPredicted RBP16.89■□□□□ 0.29
TRIM39-204ENST00000396548 NUTM2GQ5VZR2 741 aa16.89■□□□□ 0.29
TRIM39-204ENST00000396548 PHF23Q9BUL5 403 aaPredicted RBP16.89■□□□□ 0.29
TRIM39-204ENST00000396548 NUDCQ9Y266 331 aa16.89■□□□□ 0.29
TRIM39-204ENST00000396548 DDX17Q92841 729 aaKnown RBP16.88■□□□□ 0.29
TRIM39-204ENST00000396548 FLT4P35916 1363 aa16.88■□□□□ 0.29
TRIM39-204ENST00000396548 NPHP3Q7Z494 1330 aa16.88■□□□□ 0.29
TRIM39-204ENST00000396548 APAF1O14727 1248 aa16.87■□□□□ 0.29
TRIM39-204ENST00000396548 U2AF1L5P0DN76 240 aaPredicted RBP16.87■□□□□ 0.29
TRIM39-204ENST00000396548 U2AF1Q01081 240 aaKnown RBP eCLIP16.87■□□□□ 0.29
TRIM39-204ENST00000396548 PPM1GO15355 546 aaPredicted RBP16.87■□□□□ 0.29
TRIM39-204ENST00000396548 TNS3Q68CZ2 1445 aa16.87■□□□□ 0.29
TRIM39-204ENST00000396548 RTL1A6NKG5 1358 aa16.87■□□□□ 0.29
TRIM39-204ENST00000396548 PDE3BQ13370 1112 aa16.87■□□□□ 0.29
TRIM39-204ENST00000396548 EIF4A2Q14240 407 aaKnown RBP16.87■□□□□ 0.29
TRIM39-204ENST00000396548 NGEFQ8N5V2 710 aa16.87■□□□□ 0.29
TRIM39-204ENST00000396548 RSPH6AQ9H0K4 717 aa16.87■□□□□ 0.29
TRIM39-204ENST00000396548 HSP90AB2PQ58FF8 381 aa16.86■□□□□ 0.29
TRIM39-204ENST00000396548 SOS2Q07890 1332 aaPredicted RBP16.85■□□□□ 0.29
TRIM39-204ENST00000396548 FCHSD2O94868 740 aa16.85■□□□□ 0.29
TRIM39-204ENST00000396548 COL18A1P39060 1754 aa16.85■□□□□ 0.29
TRIM39-204ENST00000396548 ABCA3Q99758 1704 aa16.84■□□□□ 0.29
TRIM39-204ENST00000396548 SPATA31A3Q5VYP0 1347 aa16.84■□□□□ 0.29
TRIM39-204ENST00000396548 U2SURPO15042 1029 aaKnown RBP16.84■□□□□ 0.29
TRIM39-204ENST00000396548 TCP11L2Q8N4U5 519 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms