RNA–Protein interactions for RNA: ENST00000380833.8

CLCN4-202, Transcript of chloride voltage-gated channel 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLCN4, Length 6,750 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN4-202ENST00000380833 VPS37CA5D8V6 355 aaPredicted RBP12.86□□□□□ -0.35
CLCN4-202ENST00000380833 CAGE1Q8TC20 777 aa12.86□□□□□ -0.35
CLCN4-202ENST00000380833 SPINK5Q9NQ38 1064 aaPredicted RBP12.86□□□□□ -0.35
CLCN4-202ENST00000380833 TRDNQ13061 729 aa12.86□□□□□ -0.35
CLCN4-202ENST00000380833 EIF3AQ14152 1382 aaKnown RBP12.86□□□□□ -0.35
CLCN4-202ENST00000380833 BICD2Q8TD16 824 aa12.86□□□□□ -0.35
CLCN4-202ENST00000380833 SHTN1A0MZ66 631 aa12.86□□□□□ -0.35
CLCN4-202ENST00000380833 EPS15P42566 896 aa12.86□□□□□ -0.35
CLCN4-202ENST00000380833 IPO7O95373 1038 aaKnown RBP12.86□□□□□ -0.35
CLCN4-202ENST00000380833 GTF2F1P35269 517 aaKnown RBP eCLIP12.86□□□□□ -0.35
CLCN4-202ENST00000380833 PANK3Q9H999 370 aa12.86□□□□□ -0.35
CLCN4-202ENST00000380833 CLASRPQ8N2M8 674 aaKnown RBP12.85□□□□□ -0.35
CLCN4-202ENST00000380833 WDR66Q8TBY9 1149 aa12.85□□□□□ -0.35
CLCN4-202ENST00000380833 COG6Q9Y2V7 657 aa12.85□□□□□ -0.35
CLCN4-202ENST00000380833 BICDL1Q6ZP65 573 aa12.85□□□□□ -0.35
CLCN4-202ENST00000380833 TXLNBQ8N3L3 684 aa12.85□□□□□ -0.35
CLCN4-202ENST00000380833 NUCB2P80303 420 aa12.84□□□□□ -0.35
CLCN4-202ENST00000380833 SOGA1O94964 1423 aa12.84□□□□□ -0.35
CLCN4-202ENST00000380833 G3BP1Q13283 466 aaKnown RBP eCLIP12.84□□□□□ -0.35
CLCN4-202ENST00000380833 DDX54Q8TDD1 881 aaKnown RBP12.84□□□□□ -0.35
CLCN4-202ENST00000380833 RAPGEF4Q8WZA2 1011 aa12.84□□□□□ -0.35
CLCN4-202ENST00000380833 ECM2O94769 699 aaPredicted RBP12.83□□□□□ -0.35
CLCN4-202ENST00000380833 KIF20AO95235 890 aa12.83□□□□□ -0.36
CLCN4-202ENST00000380833 FAM69CQ0P6D2 419 aa12.83□□□□□ -0.36
CLCN4-202ENST00000380833 SLC26A8Q96RN1 970 aa12.83□□□□□ -0.36
CLCN4-202ENST00000380833 GRM1Q13255 1194 aa12.83□□□□□ -0.36
CLCN4-202ENST00000380833 AAMPQ13685 434 aa12.83□□□□□ -0.36
CLCN4-202ENST00000380833 TTC31Q49AM3 519 aaPredicted RBP12.83□□□□□ -0.36
CLCN4-202ENST00000380833 TSPY26PQ9H489 355 aa12.83□□□□□ -0.36
CLCN4-202ENST00000380833 ZNF219Q9P2Y4 722 aaPredicted RBP12.83□□□□□ -0.36
CLCN4-202ENST00000380833 CCDC47Q96A33 483 aaKnown RBP12.82□□□□□ -0.36
CLCN4-202ENST00000380833 TSPYL4Q9UJ04 414 aa12.82□□□□□ -0.36
CLCN4-202ENST00000380833 PIBF1Q8WXW3 757 aa12.82□□□□□ -0.36
CLCN4-202ENST00000380833 SWAP70Q9UH65 585 aa12.82□□□□□ -0.36
CLCN4-202ENST00000380833 GBP2P32456 591 aaPredicted RBP12.82□□□□□ -0.36
CLCN4-202ENST00000380833 ESCO1Q5FWF5 840 aa12.82□□□□□ -0.36
CLCN4-202ENST00000380833 PDILTQ8N807 584 aa12.82□□□□□ -0.36
CLCN4-202ENST00000380833 CCDC97Q96F63 343 aaPredicted RBP12.82□□□□□ -0.36
CLCN4-202ENST00000380833 ARHGAP35Q9NRY4 1499 aa12.82□□□□□ -0.36
CLCN4-202ENST00000380833 WWC2Q6AWC2 1192 aa12.81□□□□□ -0.36
CLCN4-202ENST00000380833 MICALCLQ6ZW33 695 aa12.81□□□□□ -0.36
CLCN4-202ENST00000380833 ZHX3Q9H4I2 956 aa12.81□□□□□ -0.36
CLCN4-202ENST00000380833 CPLX2Q6PUV4 134 aaKnown RBP12.81□□□□□ -0.36
CLCN4-202ENST00000380833 TMCO3Q6UWJ1 677 aa12.81□□□□□ -0.36
CLCN4-202ENST00000380833 BRPF1P55201 1214 aaPredicted RBP12.8□□□□□ -0.36
CLCN4-202ENST00000380833 CCDC94Q9BW85 323 aaPredicted RBP12.8□□□□□ -0.36
CLCN4-202ENST00000380833 XPCQ01831 940 aaPredicted RBP12.8□□□□□ -0.36
CLCN4-202ENST00000380833 DZIP1Q86YF9 867 aaKnown RBP12.8□□□□□ -0.36
CLCN4-202ENST00000380833 RASSF4Q9H2L5 321 aa12.8□□□□□ -0.36
CLCN4-202ENST00000380833 RIPK4P57078 832 aa12.8□□□□□ -0.36
CLCN4-202ENST00000380833 MYCBPQ99417 103 aaPredicted RBP12.8□□□□□ -0.36
CLCN4-202ENST00000380833 LRCH2Q5VUJ6 765 aa12.79□□□□□ -0.36
CLCN4-202ENST00000380833 CADPSQ9ULU8 1353 aa12.79□□□□□ -0.36
CLCN4-202ENST00000380833 ANKRD20A12PQ8NF67 263 aa12.79□□□□□ -0.36
CLCN4-202ENST00000380833 RNF214Q8ND24 703 aa12.79□□□□□ -0.36
CLCN4-202ENST00000380833 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.79□□□□□ -0.36
CLCN4-202ENST00000380833 CLCN1P35523 988 aa12.79□□□□□ -0.36
CLCN4-202ENST00000380833 WWC3Q9ULE0 1092 aa12.78□□□□□ -0.36
CLCN4-202ENST00000380833 SPDYE4A6NLX3 237 aa12.78□□□□□ -0.36
CLCN4-202ENST00000380833 CEBPZQ03701 1054 aaKnown RBP12.78□□□□□ -0.36
CLCN4-202ENST00000380833 CNPY4Q8N129 248 aa12.78□□□□□ -0.36
CLCN4-202ENST00000380833 L3MBTL2Q969R5 705 aa12.78□□□□□ -0.36
CLCN4-202ENST00000380833 DDX58O95786 925 aaKnown RBP12.78□□□□□ -0.36
CLCN4-202ENST00000380833 DHX8Q14562 1220 aaKnown RBP12.78□□□□□ -0.36
CLCN4-202ENST00000380833 OFD1O75665 1012 aa12.78□□□□□ -0.36
CLCN4-202ENST00000380833 CCDC85AQ96PX6 553 aaPredicted RBP12.78□□□□□ -0.36
CLCN4-202ENST00000380833 ST20-MTHFSA0A0A6YYL1 179 aa12.78□□□□□ -0.36
CLCN4-202ENST00000380833 ZSCAN29Q8IWY8 852 aaPredicted RBP12.78□□□□□ -0.36
CLCN4-202ENST00000380833 CCDC102AQ96A19 550 aa12.78□□□□□ -0.36
CLCN4-202ENST00000380833 SPATA24Q86W54 205 aa12.77□□□□□ -0.36
CLCN4-202ENST00000380833 LRRCC1Q9C099 1032 aa12.77□□□□□ -0.36
CLCN4-202ENST00000380833 ANKRD30AQ9BXX3 1397 aa12.77□□□□□ -0.36
CLCN4-202ENST00000380833 IVLP07476 585 aa12.77□□□□□ -0.37
CLCN4-202ENST00000380833 ZKSCAN1P17029 563 aaPredicted RBP12.77□□□□□ -0.37
CLCN4-202ENST00000380833 MATR3P43243 847 aaKnown RBP eCLIP12.77□□□□□ -0.37
CLCN4-202ENST00000380833 CRBNQ96SW2 442 aa12.77□□□□□ -0.37
CLCN4-202ENST00000380833 MAP4K4O95819 1239 aaPredicted RBP12.77□□□□□ -0.37
CLCN4-202ENST00000380833 ZBTB12Q9Y330 459 aaPredicted RBP12.77□□□□□ -0.37
CLCN4-202ENST00000380833 SETD5Q9C0A6 1442 aa12.77□□□□□ -0.37
CLCN4-202ENST00000380833 ABCC8Q09428 1581 aa12.77□□□□□ -0.37
CLCN4-202ENST00000380833 SEPT6Q14141 434 aa12.77□□□□□ -0.37
CLCN4-202ENST00000380833 RALYLQ86SE5 291 aaKnown RBP12.77□□□□□ -0.37
CLCN4-202ENST00000380833 MBD3O95983 291 aa12.76□□□□□ -0.37
CLCN4-202ENST00000380833 CABP2Q9NPB3 220 aa12.76□□□□□ -0.37
CLCN4-202ENST00000380833 KRT18P05783 430 aaKnown RBP12.76□□□□□ -0.37
CLCN4-202ENST00000380833 ANKRD62A6NC57 917 aa12.76□□□□□ -0.37
CLCN4-202ENST00000380833 APAF1O14727 1248 aa12.76□□□□□ -0.37
CLCN4-202ENST00000380833 SIL1Q9H173 461 aa12.75□□□□□ -0.37
CLCN4-202ENST00000380833 GGNBP2Q9H3C7 697 aa12.75□□□□□ -0.37
CLCN4-202ENST00000380833 PDE3BQ13370 1112 aa12.75□□□□□ -0.37
CLCN4-202ENST00000380833 RNF168Q8IYW5 571 aaPredicted RBP12.75□□□□□ -0.37
CLCN4-202ENST00000380833 A0A1B0GUL7 405 aa12.75□□□□□ -0.37
CLCN4-202ENST00000380833 LRRFIP1Q32MZ4 808 aaKnown RBP12.75□□□□□ -0.37
CLCN4-202ENST00000380833 TMEM132EQ6IEE7 984 aa12.74□□□□□ -0.37
CLCN4-202ENST00000380833 TCHPQ9BT92 498 aa12.74□□□□□ -0.37
CLCN4-202ENST00000380833 TRIM5Q9C035 493 aa12.74□□□□□ -0.37
CLCN4-202ENST00000380833 NLRP6P59044 892 aa12.74□□□□□ -0.37
CLCN4-202ENST00000380833 KRT222Q8N1A0 295 aa12.74□□□□□ -0.37
CLCN4-202ENST00000380833 CNNM1Q9NRU3 951 aa12.74□□□□□ -0.37
CLCN4-202ENST00000380833 DIAPH1O60610 1272 aaKnown RBP12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms