RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 PRAM1Q96QH2 718 aa16.71■□□□□ 0.27
RTN3-204ENST00000354497 POGKQ9P215 609 aa16.7■□□□□ 0.26
RTN3-204ENST00000354497 COL14A1Q05707 1796 aaKnown RBP16.7■□□□□ 0.26
RTN3-204ENST00000354497 SIRT1Q96EB6 747 aa16.7■□□□□ 0.26
RTN3-204ENST00000354497 SPATA31A5Q5VU36 1347 aa16.69■□□□□ 0.26
RTN3-204ENST00000354497 SPATA31A7Q8IWB4 1347 aa16.69■□□□□ 0.26
RTN3-204ENST00000354497 DHX57Q6P158 1386 aaKnown RBP16.69■□□□□ 0.26
RTN3-204ENST00000354497 ADGRB2O60241 1585 aa16.69■□□□□ 0.26
RTN3-204ENST00000354497 TRIM37O94972 964 aa16.69■□□□□ 0.26
RTN3-204ENST00000354497 TNS1Q9HBL0 1735 aaKnown RBP16.69■□□□□ 0.26
RTN3-204ENST00000354497 GPRASP1Q5JY77 1395 aa16.68■□□□□ 0.26
RTN3-204ENST00000354497 CFAP70Q5T0N1 1121 aa16.68■□□□□ 0.26
RTN3-204ENST00000354497 DISP2A7MBM2 1401 aa16.68■□□□□ 0.26
RTN3-204ENST00000354497 PAK3O75914 559 aaPredicted RBP16.67■□□□□ 0.26
RTN3-204ENST00000354497 APBA3O96018 575 aa16.67■□□□□ 0.26
RTN3-204ENST00000354497 PRDM11Q9NQV5 511 aa16.67■□□□□ 0.26
RTN3-204ENST00000354497 HIRIP3Q9BW71 556 aaPredicted RBP16.66■□□□□ 0.26
RTN3-204ENST00000354497 C14orf93Q9H972 538 aaKnown RBP16.66■□□□□ 0.26
RTN3-204ENST00000354497 STRN4Q9NRL3 753 aa16.66■□□□□ 0.26
RTN3-204ENST00000354497 ANKARQ7Z5J8 1434 aa16.66■□□□□ 0.26
RTN3-204ENST00000354497 THSD7AQ9UPZ6 1657 aa16.66■□□□□ 0.26
RTN3-204ENST00000354497 CAMKK2Q96RR4 588 aa16.65■□□□□ 0.26
RTN3-204ENST00000354497 PPP1R1BQ9UD71 204 aaPredicted RBP16.65■□□□□ 0.26
RTN3-204ENST00000354497 TRPM3Q9HCF6 1732 aaPredicted RBP16.65■□□□□ 0.26
RTN3-204ENST00000354497 FAM196AQ6ZSG2 479 aa16.64■□□□□ 0.25
RTN3-204ENST00000354497 ACIN1Q9UKV3 1341 aaKnown RBP16.63■□□□□ 0.25
RTN3-204ENST00000354497 NGDNQ8NEJ9 315 aaKnown RBP16.63■□□□□ 0.25
RTN3-204ENST00000354497 USP35Q9P2H5 1018 aa16.63■□□□□ 0.25
RTN3-204ENST00000354497 MINK1Q8N4C8 1332 aaPredicted RBP16.63■□□□□ 0.25
RTN3-204ENST00000354497 ALS2Q96Q42 1657 aa16.62■□□□□ 0.25
RTN3-204ENST00000354497 CHRNA2Q15822 529 aa16.62■□□□□ 0.25
RTN3-204ENST00000354497 NBPF8Q3BBV2 869 aa16.62■□□□□ 0.25
RTN3-204ENST00000354497 NBPF14Q5TI25 921 aa16.62■□□□□ 0.25
RTN3-204ENST00000354497 MPHOSPH9Q99550 1183 aa16.62■□□□□ 0.25
RTN3-204ENST00000354497 SPATA31A1Q5TZJ5 1347 aa16.62■□□□□ 0.25
RTN3-204ENST00000354497 TRAK1Q9UPV9 953 aa16.61■□□□□ 0.25
RTN3-204ENST00000354497 PARD3Q8TEW0 1356 aa16.6■□□□□ 0.25
RTN3-204ENST00000354497 KIAA0232Q92628 1395 aa16.6■□□□□ 0.25
RTN3-204ENST00000354497 PDE3BQ13370 1112 aa16.6■□□□□ 0.25
RTN3-204ENST00000354497 EIF3AQ14152 1382 aaKnown RBP16.59■□□□□ 0.25
RTN3-204ENST00000354497 PRR36Q9H6K5 1346 aa16.59■□□□□ 0.25
RTN3-204ENST00000354497 ZC3H6P61129 1189 aaKnown RBP16.59■□□□□ 0.25
RTN3-204ENST00000354497 DLC1Q96QB1 1528 aa16.58■□□□□ 0.25
RTN3-204ENST00000354497 EVA1CP58658 441 aa16.58■□□□□ 0.24
RTN3-204ENST00000354497 NUTM2GQ5VZR2 741 aa16.57■□□□□ 0.24
RTN3-204ENST00000354497 SPON1Q9HCB6 807 aa16.57■□□□□ 0.24
RTN3-204ENST00000354497 TULP4Q9NRJ4 1543 aa16.57■□□□□ 0.24
RTN3-204ENST00000354497 CRYBG1Q9Y4K1 1723 aa16.57■□□□□ 0.24
RTN3-204ENST00000354497 RREB1Q92766 1687 aa16.56■□□□□ 0.24
RTN3-204ENST00000354497 NUP188Q5SRE5 1749 aa16.56■□□□□ 0.24
RTN3-204ENST00000354497 WASLO00401 505 aaPredicted RBP16.54■□□□□ 0.24
RTN3-204ENST00000354497 KCNQ2O43526 872 aa16.54■□□□□ 0.24
RTN3-204ENST00000354497 PHRF1Q9P1Y6 1649 aaKnown RBP16.53■□□□□ 0.24
RTN3-204ENST00000354497 SSH2Q76I76 1423 aa16.52■□□□□ 0.24
RTN3-204ENST00000354497 NINLQ9Y2I6 1382 aa16.51■□□□□ 0.23
RTN3-204ENST00000354497 LARP1Q6PKG0 1096 aaKnown RBP16.51■□□□□ 0.23
RTN3-204ENST00000354497 BARGINQ6ZT62 677 aa16.51■□□□□ 0.23
RTN3-204ENST00000354497 ADGRB1O14514 1584 aa16.51■□□□□ 0.23
RTN3-204ENST00000354497 TCP11L2Q8N4U5 519 aa16.5■□□□□ 0.23
RTN3-204ENST00000354497 NUDT16Q96DE0 195 aaKnown RBP16.49■□□□□ 0.23
RTN3-204ENST00000354497 KDM2AQ9Y2K7 1162 aa16.49■□□□□ 0.23
RTN3-204ENST00000354497 ATP7BP35670 1465 aa16.49■□□□□ 0.23
RTN3-204ENST00000354497 CAMTA1Q9Y6Y1 1673 aa16.48■□□□□ 0.23
RTN3-204ENST00000354497 ZBTB7CA1YPR0 619 aa16.48■□□□□ 0.23
RTN3-204ENST00000354497 ITSN1Q15811 1721 aa16.47■□□□□ 0.23
RTN3-204ENST00000354497 NRKQ7Z2Y5 1582 aa16.45■□□□□ 0.22
RTN3-204ENST00000354497 ABTB2Q8N961 1025 aa16.45■□□□□ 0.22
RTN3-204ENST00000354497 ZBTB7AO95365 584 aa16.44■□□□□ 0.22
RTN3-204ENST00000354497 DCAF11Q8TEB1 546 aa16.44■□□□□ 0.22
RTN3-204ENST00000354497 THRAP3Q9Y2W1 955 aaKnown RBP16.44■□□□□ 0.22
RTN3-204ENST00000354497 OVOS2A0A0G2JMS6 1433 aa16.43■□□□□ 0.22
RTN3-204ENST00000354497 OVOS2A0A0J9YW53 1432 aa16.43■□□□□ 0.22
RTN3-204ENST00000354497 SLC4A2P04920 1241 aa16.43■□□□□ 0.22
RTN3-204ENST00000354497 ACEP12821 1306 aa16.43■□□□□ 0.22
RTN3-204ENST00000354497 OVOS2Q6IE36 1432 aa16.43■□□□□ 0.22
RTN3-204ENST00000354497 CDK19Q9BWU1 502 aa16.43■□□□□ 0.22
RTN3-204ENST00000354497 BCL11BQ9C0K0 894 aaPredicted RBP16.43■□□□□ 0.22
RTN3-204ENST00000354497 ANO8Q9HCE9 1232 aaPredicted RBP16.43■□□□□ 0.22
RTN3-204ENST00000354497 SENP3-EIF4A1A0A087X0R7 540 aa16.42■□□□□ 0.22
RTN3-204ENST00000354497 RNF39Q9H2S5 420 aa16.42■□□□□ 0.22
RTN3-204ENST00000354497 C11orf95C9JLR9 678 aaPredicted RBP16.41■□□□□ 0.22
RTN3-204ENST00000354497 ZNF784Q8NCA9 323 aaPredicted RBP16.41■□□□□ 0.22
RTN3-204ENST00000354497 PARP4Q9UKK3 1724 aaKnown RBP16.4■□□□□ 0.22
RTN3-204ENST00000354497 PDGFDQ9GZP0 370 aaPredicted RBP16.4■□□□□ 0.22
RTN3-204ENST00000354497 ATF5Q9Y2D1 282 aaPredicted RBP16.4■□□□□ 0.22
RTN3-204ENST00000354497 LMO7Q8WWI1 1683 aa16.4■□□□□ 0.22
RTN3-204ENST00000354497 CPDO75976 1380 aa16.39■□□□□ 0.21
RTN3-204ENST00000354497 COL5A2P05997 1499 aaPredicted RBP16.39■□□□□ 0.21
RTN3-204ENST00000354497 ARHGEF28Q8N1W1 1705 aaKnown RBP16.39■□□□□ 0.21
RTN3-204ENST00000354497 POLR3AO14802 1390 aaPredicted RBP16.39■□□□□ 0.21
RTN3-204ENST00000354497 DDB1Q16531 1140 aa16.38■□□□□ 0.21
RTN3-204ENST00000354497 NLRP13Q86W25 1043 aa16.38■□□□□ 0.21
RTN3-204ENST00000354497 MYOM1P52179 1685 aa16.38■□□□□ 0.21
RTN3-204ENST00000354497 CRB1P82279 1406 aa16.38■□□□□ 0.21
RTN3-204ENST00000354497 USP19O94966 1318 aa16.38■□□□□ 0.21
RTN3-204ENST00000354497 PLSCR1O15162 318 aa16.37■□□□□ 0.21
RTN3-204ENST00000354497 GCP02774 474 aa16.37■□□□□ 0.21
RTN3-204ENST00000354497 CCDC61Q9Y6R9 512 aa16.37■□□□□ 0.21
RTN3-204ENST00000354497 CASZ1Q86V15 1759 aa16.37■□□□□ 0.21
RTN3-204ENST00000354497 TOPAZ1Q8N9V7 1692 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms