RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 SCAPERQ9BY12 1400 aa16.73■□□□□ 0.27
SKA3-201ENST00000298260 MTHFSP49914 203 aa16.73■□□□□ 0.27
SKA3-201ENST00000298260 HDAC1Q13547 482 aaPredicted RBP16.73■□□□□ 0.27
SKA3-201ENST00000298260 ANKRD45Q5TZF3 282 aa16.73■□□□□ 0.27
SKA3-201ENST00000298260 CFAP70Q5T0N1 1121 aa16.73■□□□□ 0.27
SKA3-201ENST00000298260 TBC1D9Q6ZT07 1266 aa16.73■□□□□ 0.27
SKA3-201ENST00000298260 LAMC1P11047 1609 aa16.73■□□□□ 0.27
SKA3-201ENST00000298260 MYOM1P52179 1685 aa16.72■□□□□ 0.27
SKA3-201ENST00000298260 SYNMO15061 1565 aa16.72■□□□□ 0.27
SKA3-201ENST00000298260 CD109Q6YHK3 1445 aa16.72■□□□□ 0.27
SKA3-201ENST00000298260 ZNF500O60304 480 aaPredicted RBP16.72■□□□□ 0.27
SKA3-201ENST00000298260 U2AF1L5P0DN76 240 aaPredicted RBP16.72■□□□□ 0.27
SKA3-201ENST00000298260 U2AF1Q01081 240 aaKnown RBP eCLIP16.72■□□□□ 0.27
SKA3-201ENST00000298260 SYCE3A1L190 88 aa16.71■□□□□ 0.27
SKA3-201ENST00000298260 CBX1P83916 185 aa16.71■□□□□ 0.27
SKA3-201ENST00000298260 LMBRD1Q9NUN5 540 aa16.71■□□□□ 0.27
SKA3-201ENST00000298260 NUCB1Q02818 461 aa16.71■□□□□ 0.27
SKA3-201ENST00000298260 CHD1LQ86WJ1 897 aa16.71■□□□□ 0.27
SKA3-201ENST00000298260 GPT2Q8TD30 523 aa16.71■□□□□ 0.27
SKA3-201ENST00000298260 ZKSCAN5Q9Y2L8 839 aa16.71■□□□□ 0.27
SKA3-201ENST00000298260 TPRNQ4KMQ1 711 aa16.7■□□□□ 0.26
SKA3-201ENST00000298260 SMAP1Q8IYB5 467 aaPredicted RBP16.7■□□□□ 0.26
SKA3-201ENST00000298260 C17orf53Q8N3J3 647 aaPredicted RBP16.7■□□□□ 0.26
SKA3-201ENST00000298260 ZNF830Q96NB3 372 aaPredicted RBP16.7■□□□□ 0.26
SKA3-201ENST00000298260 SLC12A5Q9H2X9 1139 aa16.7■□□□□ 0.26
SKA3-201ENST00000298260 IGSF3O75054 1194 aa16.7■□□□□ 0.26
SKA3-201ENST00000298260 WDR63Q8IWG1 891 aa16.7■□□□□ 0.26
SKA3-201ENST00000298260 ZGPATQ8N5A5 531 aaKnown RBP16.7■□□□□ 0.26
SKA3-201ENST00000298260 PHF23Q9BUL5 403 aaPredicted RBP16.7■□□□□ 0.26
SKA3-201ENST00000298260 EIF2AK4Q9P2K8 1649 aaKnown RBP16.7■□□□□ 0.26
SKA3-201ENST00000298260 ATF7IPQ6VMQ6 1270 aa16.69■□□□□ 0.26
SKA3-201ENST00000298260 MAP7D2Q96T17 732 aa16.69■□□□□ 0.26
SKA3-201ENST00000298260 PDLIM2Q96JY6 352 aa16.69■□□□□ 0.26
SKA3-201ENST00000298260 DDX19BQ9UMR2 479 aa16.69■□□□□ 0.26
SKA3-201ENST00000298260 ADGRL1O94910 1474 aa16.69■□□□□ 0.26
SKA3-201ENST00000298260 TERF1P54274 439 aa16.69■□□□□ 0.26
SKA3-201ENST00000298260 ZNF445P59923 1031 aa16.69■□□□□ 0.26
SKA3-201ENST00000298260 ZBTB40Q9NUA8 1239 aa16.69■□□□□ 0.26
SKA3-201ENST00000298260 ZSCAN20P17040 1043 aaPredicted RBP16.68■□□□□ 0.26
SKA3-201ENST00000298260 DNTTIP2Q5QJE6 756 aaKnown RBP16.68■□□□□ 0.26
SKA3-201ENST00000298260 TMEM63CQ9P1W3 806 aa16.68■□□□□ 0.26
SKA3-201ENST00000298260 SCAF11Q99590 1463 aaKnown RBP16.67■□□□□ 0.26
SKA3-201ENST00000298260 POLR3AO14802 1390 aaPredicted RBP16.67■□□□□ 0.26
SKA3-201ENST00000298260 NPC1L1Q9UHC9 1359 aa16.67■□□□□ 0.26
SKA3-201ENST00000298260 DYNC1I1O14576 645 aa16.67■□□□□ 0.26
SKA3-201ENST00000298260 KIF3BO15066 747 aa16.67■□□□□ 0.26
SKA3-201ENST00000298260 FOXD4L6Q3SYB3 417 aaPredicted RBP16.67■□□□□ 0.26
SKA3-201ENST00000298260 FOXD4L3Q6VB84 417 aaPredicted RBP16.67■□□□□ 0.26
SKA3-201ENST00000298260 NGEFQ8N5V2 710 aa16.67■□□□□ 0.26
SKA3-201ENST00000298260 SENP3Q9H4L4 574 aaPredicted RBP16.66■□□□□ 0.26
SKA3-201ENST00000298260 RNF17Q9BXT8 1623 aaKnown RBP16.66■□□□□ 0.26
SKA3-201ENST00000298260 SASS6Q6UVJ0 657 aa16.65■□□□□ 0.26
SKA3-201ENST00000298260 PTMAP06454 111 aaKnown RBP16.65■□□□□ 0.26
SKA3-201ENST00000298260 FGD1P98174 961 aa16.65■□□□□ 0.26
SKA3-201ENST00000298260 ABCC1P33527 1531 aa16.65■□□□□ 0.26
SKA3-201ENST00000298260 NSD3Q9BZ95 1437 aa16.65■□□□□ 0.26
SKA3-201ENST00000298260 U2SURPO15042 1029 aaKnown RBP16.65■□□□□ 0.26
SKA3-201ENST00000298260 ZNF710Q8N1W2 664 aa16.65■□□□□ 0.26
SKA3-201ENST00000298260 IQGAP1P46940 1657 aa16.64■□□□□ 0.25
SKA3-201ENST00000298260 SPDYE4A6NLX3 237 aa16.64■□□□□ 0.25
SKA3-201ENST00000298260 BMP2KLQ5H9B9 411 aa16.64■□□□□ 0.25
SKA3-201ENST00000298260 RSPH4AQ5TD94 716 aa16.64■□□□□ 0.25
SKA3-201ENST00000298260 TSPOAP1O95153 1857 aa16.64■□□□□ 0.25
SKA3-201ENST00000298260 KIF16BQ96L93 1317 aa16.64■□□□□ 0.25
SKA3-201ENST00000298260 PTMSP20962 102 aa16.64■□□□□ 0.25
SKA3-201ENST00000298260 DMTNQ08495 405 aa16.64■□□□□ 0.25
SKA3-201ENST00000298260 CCDC94Q9BW85 323 aaPredicted RBP16.64■□□□□ 0.25
SKA3-201ENST00000298260 IQSEC2Q5JU85 1478 aa16.64■□□□□ 0.25
SKA3-201ENST00000298260 ARHGEF5Q12774 1597 aa16.63■□□□□ 0.25
SKA3-201ENST00000298260 ATP2B3Q16720 1220 aa16.63■□□□□ 0.25
SKA3-201ENST00000298260 GGT6Q6P531 493 aa16.63■□□□□ 0.25
SKA3-201ENST00000298260 ERVK-7P63135 1459 aa16.63■□□□□ 0.25
SKA3-201ENST00000298260 IBTKQ9P2D0 1353 aaPredicted RBP16.63■□□□□ 0.25
SKA3-201ENST00000298260 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.63■□□□□ 0.25
SKA3-201ENST00000298260 SHPRHQ149N8 1683 aa16.62■□□□□ 0.25
SKA3-201ENST00000298260 ZDHHC9Q9Y397 364 aa16.62■□□□□ 0.25
SKA3-201ENST00000298260 ABCA9Q8IUA7 1624 aa16.62■□□□□ 0.25
SKA3-201ENST00000298260 MADDQ8WXG6 1647 aa16.62■□□□□ 0.25
SKA3-201ENST00000298260 HS1BP3Q53T59 392 aa16.62■□□□□ 0.25
SKA3-201ENST00000298260 CEP152O94986 1710 aa16.61■□□□□ 0.25
SKA3-201ENST00000298260 ELL2O00472 640 aaPredicted RBP16.6■□□□□ 0.25
SKA3-201ENST00000298260 CLEC17AQ6ZS10 378 aa16.6■□□□□ 0.25
SKA3-201ENST00000298260 ADGRF5Q8IZF2 1346 aa16.6■□□□□ 0.25
SKA3-201ENST00000298260 CSPP1Q1MSJ5 1256 aa16.6■□□□□ 0.25
SKA3-201ENST00000298260 C16orf71Q8IYS4 520 aaPredicted RBP16.6■□□□□ 0.25
SKA3-201ENST00000298260 TRAK1Q9UPV9 953 aa16.6■□□□□ 0.25
SKA3-201ENST00000298260 ATAD2Q6PL18 1390 aa16.59■□□□□ 0.25
SKA3-201ENST00000298260 APBB1O00213 710 aa16.59■□□□□ 0.25
SKA3-201ENST00000298260 GSPT1P15170 499 aaKnown RBP16.59■□□□□ 0.25
SKA3-201ENST00000298260 PPP4R3BQ5MIZ7 849 aa16.59■□□□□ 0.25
SKA3-201ENST00000298260 KDM5AP29375 1690 aaKnown RBP16.59■□□□□ 0.25
SKA3-201ENST00000298260 CCDC39Q9UFE4 941 aa16.59■□□□□ 0.25
SKA3-201ENST00000298260 TRIM35Q9UPQ4 493 aa16.59■□□□□ 0.25
SKA3-201ENST00000298260 LRSAM1Q6UWE0 723 aa16.58■□□□□ 0.25
SKA3-201ENST00000298260 NOL8Q76FK4 1167 aaKnown RBP16.58■□□□□ 0.25
SKA3-201ENST00000298260 TTC12Q9H892 705 aaPredicted RBP16.58■□□□□ 0.25
SKA3-201ENST00000298260 CYP2E1P05181 493 aaPredicted RBP16.58■□□□□ 0.24
SKA3-201ENST00000298260 SIRT2Q8IXJ6 389 aa16.58■□□□□ 0.24
SKA3-201ENST00000298260 GDPD2Q9HCC8 539 aa16.58■□□□□ 0.24
SKA3-201ENST00000298260 PPIP5K1Q6PFW1 1433 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 109.3 ms