RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 ROGDIQ9GZN7 287 aa9.08□□□□□ -0.96
VCL-206ENST00000623461 ACAD9Q9H845 621 aa9.08□□□□□ -0.96
VCL-206ENST00000623461 LATS2Q9NRM7 1088 aa9.08□□□□□ -0.96
VCL-206ENST00000623461 DNAJC28Q9NX36 388 aa9.08□□□□□ -0.96
VCL-206ENST00000623461 USP21Q9UK80 565 aa9.08□□□□□ -0.96
VCL-206ENST00000623461 MAPRE3Q9UPY8 281 aa9.08□□□□□ -0.96
VCL-206ENST00000623461 LRRC42Q9Y546 428 aa9.08□□□□□ -0.96
VCL-206ENST00000623461 CAPN8A6NHC0 703 aa9.08□□□□□ -0.96
VCL-206ENST00000623461 STK25O00506 426 aa9.08□□□□□ -0.96
VCL-206ENST00000623461 SIN3BO75182 1162 aa9.08□□□□□ -0.96
VCL-206ENST00000623461 NADKO95544 446 aaPredicted RBP9.08□□□□□ -0.96
VCL-206ENST00000623461 CYP2F1P24903 491 aa9.08□□□□□ -0.96
VCL-206ENST00000623461 GSSP48637 474 aa9.08□□□□□ -0.96
VCL-206ENST00000623461 PSEN1P49768 467 aa9.08□□□□□ -0.96
VCL-206ENST00000623461 RAB42Q8N4Z0 105 aa9.08□□□□□ -0.96
VCL-206ENST00000623461 CENPIQ92674 756 aaPredicted RBP9.08□□□□□ -0.96
VCL-206ENST00000623461 GPATCH1Q9BRR8 931 aaKnown RBP9.08□□□□□ -0.96
VCL-206ENST00000623461 SPON2Q9BUD6 331 aa9.08□□□□□ -0.96
VCL-206ENST00000623461 CLDN25C9JDP6 229 aa9.08□□□□□ -0.96
VCL-206ENST00000623461 POLRMTO00411 1230 aaKnown RBP9.08□□□□□ -0.96
VCL-206ENST00000623461 TCF3P15923 654 aa9.08□□□□□ -0.96
VCL-206ENST00000623461 CSE1LP55060 971 aaKnown RBP9.08□□□□□ -0.96
VCL-206ENST00000623461 TUBA3CQ13748 450 aa9.08□□□□□ -0.96
VCL-206ENST00000623461 SGO1Q5FBB7 561 aa9.08□□□□□ -0.96
VCL-206ENST00000623461 EARS2Q5JPH6 523 aaKnown RBP9.08□□□□□ -0.96
VCL-206ENST00000623461 SLFN11Q7Z7L1 901 aa9.08□□□□□ -0.96
VCL-206ENST00000623461 FAM47BQ8NA70 645 aa9.08□□□□□ -0.96
VCL-206ENST00000623461 BPIFB6Q8NFQ5 453 aa9.08□□□□□ -0.96
VCL-206ENST00000623461 TAS1R2Q8TE23 839 aa9.08□□□□□ -0.96
VCL-206ENST00000623461 PRKD2Q9BZL6 878 aa9.08□□□□□ -0.96
VCL-206ENST00000623461 A0A0B4J269 797 aa9.08□□□□□ -0.96
VCL-206ENST00000623461 DHRS12A0PJE2 317 aa9.08□□□□□ -0.96
VCL-206ENST00000623461 PRR5-ARHGAP8B1AHC4 643 aa9.08□□□□□ -0.96
VCL-206ENST00000623461 HDAC3O15379 428 aa9.08□□□□□ -0.96
VCL-206ENST00000623461 VAPBO95292 243 aa9.08□□□□□ -0.96
VCL-206ENST00000623461 HOXB8P17481 243 aaPredicted RBP9.08□□□□□ -0.96
VCL-206ENST00000623461 ARHGAP8P85298 464 aa9.08□□□□□ -0.96
VCL-206ENST00000623461 CNTN1Q12860 1018 aa9.08□□□□□ -0.96
VCL-206ENST00000623461 NFIL3Q16649 462 aa9.08□□□□□ -0.96
VCL-206ENST00000623461 FAM98CQ17RN3 349 aaKnown RBP9.08□□□□□ -0.96
VCL-206ENST00000623461 ATF7IP2Q5U623 682 aa9.08□□□□□ -0.96
VCL-206ENST00000623461 IER5Q5VY09 327 aa9.08□□□□□ -0.96
VCL-206ENST00000623461 ANKRD13AQ8IZ07 590 aa9.08□□□□□ -0.96
VCL-206ENST00000623461 LNX1Q8TBB1 728 aaPredicted RBP9.08□□□□□ -0.96
VCL-206ENST00000623461 DPY30Q9C005 99 aa9.08□□□□□ -0.96
VCL-206ENST00000623461 PCDHB8Q9UN66 801 aa9.08□□□□□ -0.96
VCL-206ENST00000623461 FAM220BPB1ANY3 271 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 MYL12BO14950 172 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 FARP2O94887 1054 aaPredicted RBP9.07□□□□□ -0.96
VCL-206ENST00000623461 ARPP19P56211 112 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 SDE2Q6IQ49 451 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 TDRPQ86YL5 185 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 TBC1D19Q8N5T2 526 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 HPDLQ96IR7 371 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 B3GALT6Q96L58 329 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 SLITRK1Q96PX8 696 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 CADM1Q9BY67 442 aaKnown RBP9.07□□□□□ -0.96
VCL-206ENST00000623461 MUC13Q9H3R2 512 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 MRPL39Q9NYK5 338 aaKnown RBP9.07□□□□□ -0.96
VCL-206ENST00000623461 SF3B1O75533 1304 aaKnown RBP eCLIP9.07□□□□□ -0.961e-6■■■■■ 40.8
VCL-206ENST00000623461 CSPG5O95196 566 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 MYL12AP19105 171 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 TUBA1BP68363 451 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 DGKKQ5KSL6 1271 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 ANGEL2Q5VTE6 544 aaKnown RBP9.07□□□□□ -0.96
VCL-206ENST00000623461 ANO7Q6IWH7 933 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 AADACL2Q6P093 401 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 LRRC55Q6ZSA7 311 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 TUBA1AQ71U36 451 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 UTP15Q8TED0 518 aaKnown RBP9.07□□□□□ -0.96
VCL-206ENST00000623461 CDH19Q9H159 772 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 POMKQ9H5K3 350 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 CYP3A43Q9HB55 503 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 BLOC1S4Q9NUP1 217 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 TRHDEQ9UKU6 1024 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 AP4E1Q9UPM8 1137 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 MYO5BQ9ULV0 1848 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 COL3A1P02461 1466 aaPredicted RBP9.07□□□□□ -0.96
VCL-206ENST00000623461 NDUFB10O96000 172 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 SOAT1P35610 550 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 STAT5AP42229 794 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 SCNN1BP51168 640 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 CCR3P51677 355 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 PRKCEQ02156 737 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 PDIA6Q15084 440 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 SV2CQ496J9 727 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 CASP12Q6UXS9 341 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 NOP9Q86U38 636 aaKnown RBP9.07□□□□□ -0.96
VCL-206ENST00000623461 WDR49Q8IV35 697 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 TBC1D21Q8IYX1 336 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 TMEM132CQ8N3T6 1108 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 POP1Q99575 1024 aaKnown RBP9.07□□□□□ -0.96
VCL-206ENST00000623461 PNPLA8Q9NP80 782 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 TBC1D13Q9NVG8 400 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 PRR12Q9ULL5 1215 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 BBIP1A8MTZ0 92 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 ZBTB11O95625 1053 aaPredicted RBP9.07□□□□□ -0.96
VCL-206ENST00000623461 PENKP01210 267 aaPredicted RBP9.07□□□□□ -0.96
VCL-206ENST00000623461 CDH17Q12864 832 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 GRIK3Q13003 919 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms