RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 PRYO14603 147 aa5.75□□□□□ -1.49
VPS29-212ENST00000621131 TOMM40O96008 361 aa5.75□□□□□ -1.49
VPS29-212ENST00000621131 RPS6KB1P23443 525 aa5.75□□□□□ -1.49
VPS29-212ENST00000621131 CCKARP32238 428 aa5.75□□□□□ -1.49
VPS29-212ENST00000621131 HOXD12P35452 270 aa5.75□□□□□ -1.49
VPS29-212ENST00000621131 RRP1P56182 461 aaKnown RBP5.75□□□□□ -1.49
VPS29-212ENST00000621131 RRS1Q15050 365 aaKnown RBP5.75□□□□□ -1.49
VPS29-212ENST00000621131 CNGA3Q16281 694 aa5.75□□□□□ -1.49
VPS29-212ENST00000621131 FAXCQ5TGI0 409 aa5.75□□□□□ -1.49
VPS29-212ENST00000621131 CRELD2Q6UXH1 353 aaPredicted RBP5.75□□□□□ -1.49
VPS29-212ENST00000621131 RBM44Q6ZP01 1051 aaKnown RBP5.75□□□□□ -1.49
VPS29-212ENST00000621131 WDR75Q8IWA0 830 aaKnown RBP5.75□□□□□ -1.49
VPS29-212ENST00000621131 MMP21Q8N119 569 aa5.75□□□□□ -1.49
VPS29-212ENST00000621131 LRRC46Q96FV0 321 aa5.75□□□□□ -1.49
VPS29-212ENST00000621131 GJB4Q9NTQ9 266 aa5.75□□□□□ -1.49
VPS29-212ENST00000621131 ZBTB40Q9NUA8 1239 aa5.75□□□□□ -1.49
VPS29-212ENST00000621131 TMOD4Q9NZQ9 345 aa5.75□□□□□ -1.49
VPS29-212ENST00000621131 PCDHB2Q9Y5E7 798 aa5.75□□□□□ -1.49
VPS29-212ENST00000621131 SIRT4Q9Y6E7 314 aaPredicted RBP5.75□□□□□ -1.49
VPS29-212ENST00000621131 ARHGEF10O15013 1369 aa5.75□□□□□ -1.49
VPS29-212ENST00000621131 LTN1O94822 1766 aa5.75□□□□□ -1.49
VPS29-212ENST00000621131 IL16Q14005 1332 aa5.74□□□□□ -1.49
VPS29-212ENST00000621131 MST1RQ04912 1400 aa5.74□□□□□ -1.49
VPS29-212ENST00000621131 PCNTO95613 3336 aa5.74□□□□□ -1.49
VPS29-212ENST00000621131 SLC22A23A1A5C7 686 aa5.74□□□□□ -1.49
VPS29-212ENST00000621131 CCNT2O60583 730 aaKnown RBP5.74□□□□□ -1.49
VPS29-212ENST00000621131 TULP3O75386 442 aa5.74□□□□□ -1.49
VPS29-212ENST00000621131 TNFRSF1BP20333 461 aa5.74□□□□□ -1.49
VPS29-212ENST00000621131 FGFR2P21802 821 aa5.74□□□□□ -1.49
VPS29-212ENST00000621131 SCP2P22307 547 aa5.74□□□□□ -1.49
VPS29-212ENST00000621131 TKTP29401 623 aaKnown RBP5.74□□□□□ -1.49
VPS29-212ENST00000621131 PRKAR2BP31323 418 aa5.74□□□□□ -1.49
VPS29-212ENST00000621131 SLC5A2P31639 672 aa5.74□□□□□ -1.49
VPS29-212ENST00000621131 CCKBRP32239 447 aa5.74□□□□□ -1.49
VPS29-212ENST00000621131 CASP5P51878 434 aa5.74□□□□□ -1.49
VPS29-212ENST00000621131 GPS1Q13098 491 aa5.74□□□□□ -1.49
VPS29-212ENST00000621131 C9orf47Q6ZRZ4 202 aa5.74□□□□□ -1.49
VPS29-212ENST00000621131 COLCA1Q6ZS62 124 aa5.74□□□□□ -1.49
VPS29-212ENST00000621131 FAM57BQ71RH2 274 aa5.74□□□□□ -1.49
VPS29-212ENST00000621131 DEFB132Q7Z7B7 95 aa5.74□□□□□ -1.49
VPS29-212ENST00000621131 FMNL3Q8IVF7 1028 aa5.74□□□□□ -1.49
VPS29-212ENST00000621131 PIGKQ92643 395 aa5.74□□□□□ -1.49
VPS29-212ENST00000621131 CAMK1GQ96NX5 476 aa5.74□□□□□ -1.49
VPS29-212ENST00000621131 RNF26Q9BY78 433 aaPredicted RBP5.74□□□□□ -1.49
VPS29-212ENST00000621131 SEMA4BQ9NPR2 832 aaPredicted RBP5.74□□□□□ -1.49
VPS29-212ENST00000621131 TMEM45AQ9NWC5 275 aa5.74□□□□□ -1.49
VPS29-212ENST00000621131 MYO1AQ9UBC5 1043 aa5.74□□□□□ -1.49
VPS29-212ENST00000621131 TRPC5Q9UL62 973 aaPredicted RBP5.74□□□□□ -1.49
VPS29-212ENST00000621131 CHD4Q14839 1912 aa5.74□□□□□ -1.49
VPS29-212ENST00000621131 PEAK1Q9H792 1746 aa5.74□□□□□ -1.49
VPS29-212ENST00000621131 TRPM3Q9HCF6 1732 aaPredicted RBP5.74□□□□□ -1.49
VPS29-212ENST00000621131 PHRF1Q9P1Y6 1649 aaKnown RBP5.74□□□□□ -1.49
VPS29-212ENST00000621131 RNF123Q5XPI4 1314 aa5.74□□□□□ -1.49
VPS29-212ENST00000621131 NPHP3Q7Z494 1330 aa5.74□□□□□ -1.49
VPS29-212ENST00000621131 POM121BA6NF01 834 aa5.73□□□□□ -1.49
VPS29-212ENST00000621131 OR2W5A6NFC9 320 aa5.73□□□□□ -1.49
VPS29-212ENST00000621131 ZNF814B7Z6K7 855 aa5.73□□□□□ -1.49
VPS29-212ENST00000621131 H3BNX3 289 aa5.73□□□□□ -1.49
VPS29-212ENST00000621131 USP12O75317 370 aa5.73□□□□□ -1.49
VPS29-212ENST00000621131 CRYABP02511 175 aaKnown RBP5.73□□□□□ -1.49
VPS29-212ENST00000621131 ALPLP05186 524 aa5.73□□□□□ -1.49
VPS29-212ENST00000621131 TSHRP16473 764 aa5.73□□□□□ -1.49
VPS29-212ENST00000621131 DRD1P21728 446 aa5.73□□□□□ -1.49
VPS29-212ENST00000621131 IGHMBP2P38935 993 aaKnown RBP5.73□□□□□ -1.49
VPS29-212ENST00000621131 TMPOP42166 694 aaKnown RBP5.73□□□□□ -1.49
VPS29-212ENST00000621131 VPS41P49754 854 aa5.73□□□□□ -1.49
VPS29-212ENST00000621131 ZNF84P51523 738 aa5.73□□□□□ -1.49
VPS29-212ENST00000621131 RIPK4P57078 832 aa5.73□□□□□ -1.49
VPS29-212ENST00000621131 IRX6P78412 446 aaPredicted RBP5.73□□□□□ -1.49
VPS29-212ENST00000621131 MTA1Q13330 715 aa5.73□□□□□ -1.49
VPS29-212ENST00000621131 TMEM196Q5HYL7 178 aa5.73□□□□□ -1.49
VPS29-212ENST00000621131 RAP1GAP2Q684P5 730 aa5.73□□□□□ -1.49
VPS29-212ENST00000621131 MRNIPQ6NTE8 343 aa5.73□□□□□ -1.49
VPS29-212ENST00000621131 TLDC1Q6P9B6 456 aa5.73□□□□□ -1.49
VPS29-212ENST00000621131 USP17L6PQ6QN14 398 aa5.73□□□□□ -1.49
VPS29-212ENST00000621131 CLASRPQ8N2M8 674 aaKnown RBP5.73□□□□□ -1.49
VPS29-212ENST00000621131 AKAP1Q92667 903 aaKnown RBP eCLIP5.73□□□□□ -1.49
VPS29-212ENST00000621131 CELF1Q92879 486 aaKnown RBP5.73□□□□□ -1.49
VPS29-212ENST00000621131 GJA10Q969M2 543 aa5.73□□□□□ -1.49
VPS29-212ENST00000621131 GDF15Q99988 308 aa5.73□□□□□ -1.49
VPS29-212ENST00000621131 COLEC11Q9BWP8 271 aa5.73□□□□□ -1.49
VPS29-212ENST00000621131 ZNF580Q9UK33 172 aa5.73□□□□□ -1.49
VPS29-212ENST00000621131 RRP7AQ9Y3A4 280 aaKnown RBP5.73□□□□□ -1.49
VPS29-212ENST00000621131 SQORQ9Y6N5 450 aa5.73□□□□□ -1.49
VPS29-212ENST00000621131 RGPD1P0DJD0 1748 aa5.73□□□□□ -1.49
VPS29-212ENST00000621131 TNKS1BP1Q9C0C2 1729 aaKnown RBP5.73□□□□□ -1.49
VPS29-212ENST00000621131 MARF1Q9Y4F3 1742 aaKnown RBP5.73□□□□□ -1.49
VPS29-212ENST00000621131 SLIT3O75094 1523 aa5.73□□□□□ -1.49
VPS29-212ENST00000621131 MAP3K19Q56UN5 1328 aa5.73□□□□□ -1.49
VPS29-212ENST00000621131 BRWD3Q6RI45 1802 aa5.72□□□□□ -1.49
VPS29-212ENST00000621131 KPNA5O15131 536 aa5.72□□□□□ -1.49
VPS29-212ENST00000621131 TLX3O43711 291 aaPredicted RBP5.72□□□□□ -1.49
VPS29-212ENST00000621131 HMOX1P09601 288 aa5.72□□□□□ -1.49
VPS29-212ENST00000621131 MYL4P12829 197 aa5.72□□□□□ -1.49
VPS29-212ENST00000621131 SLC5A1P13866 664 aa5.72□□□□□ -1.49
VPS29-212ENST00000621131 ST6GAL1P15907 406 aa5.72□□□□□ -1.49
VPS29-212ENST00000621131 MST1P26927 711 aa5.72□□□□□ -1.49
VPS29-212ENST00000621131 EIF4A2Q14240 407 aaKnown RBP5.72□□□□□ -1.49
VPS29-212ENST00000621131 RUSC1-AS1Q66K80 236 aa5.72□□□□□ -1.49
VPS29-212ENST00000621131 KYAT3Q6YP21 454 aaKnown RBP5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms