RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 TBC1D30Q9Y2I9 924 aa14.64□□□□□ -0.07
SHKBP1-217ENST00000598558 REXO2Q9Y3B8 237 aaKnown RBP14.64□□□□□ -0.07
SHKBP1-217ENST00000598558 PAXBP1Q9Y5B6 917 aa14.64□□□□□ -0.07
SHKBP1-217ENST00000598558 RAD54BQ9Y620 910 aa14.64□□□□□ -0.07
SHKBP1-217ENST00000598558 RCCD1A6NED2 376 aa14.63□□□□□ -0.07
SHKBP1-217ENST00000598558 ATG13O75143 517 aa14.63□□□□□ -0.07
SHKBP1-217ENST00000598558 NTSR1P30989 418 aa14.63□□□□□ -0.07
SHKBP1-217ENST00000598558 FNTBP49356 437 aa14.63□□□□□ -0.07
SHKBP1-217ENST00000598558 CDH4P55283 916 aa14.63□□□□□ -0.07
SHKBP1-217ENST00000598558 MTA1Q13330 715 aa14.63□□□□□ -0.07
SHKBP1-217ENST00000598558 CDH18Q13634 790 aa14.63□□□□□ -0.07
SHKBP1-217ENST00000598558 ENPP2Q13822 863 aa14.63□□□□□ -0.07
SHKBP1-217ENST00000598558 ZNF234Q14588 700 aa14.63□□□□□ -0.07
SHKBP1-217ENST00000598558 CRY1Q16526 586 aa14.63□□□□□ -0.07
SHKBP1-217ENST00000598558 PLEKHG6Q3KR16 790 aa14.63□□□□□ -0.07
SHKBP1-217ENST00000598558 ARL13BQ3SXY8 428 aa14.63□□□□□ -0.07
SHKBP1-217ENST00000598558 PREPLQ4J6C6 727 aaPredicted RBP14.63□□□□□ -0.07
SHKBP1-217ENST00000598558 PITRM1Q5JRX3 1037 aa14.63□□□□□ -0.07
SHKBP1-217ENST00000598558 TFAP2DQ7Z6R9 452 aa14.63□□□□□ -0.07
SHKBP1-217ENST00000598558 NLRP14Q86W24 1093 aa14.63□□□□□ -0.07
SHKBP1-217ENST00000598558 ZNF564Q8TBZ8 553 aaPredicted RBP14.63□□□□□ -0.07
SHKBP1-217ENST00000598558 KCNV2Q8TDN2 545 aa14.63□□□□□ -0.07
SHKBP1-217ENST00000598558 MRGPRX3Q96LB0 322 aa14.63□□□□□ -0.07
SHKBP1-217ENST00000598558 SNRNP25Q9BV90 132 aaKnown RBP14.63□□□□□ -0.07
SHKBP1-217ENST00000598558 KCNH6Q9H252 994 aa14.63□□□□□ -0.07
SHKBP1-217ENST00000598558 MTG2Q9H4K7 406 aa14.63□□□□□ -0.07
SHKBP1-217ENST00000598558 KIAA1522Q9P206 1035 aaPredicted RBP14.63□□□□□ -0.07
SHKBP1-217ENST00000598558 CTTNBP2NLQ9P2B4 639 aa14.63□□□□□ -0.07
SHKBP1-217ENST00000598558 IMPACTQ9P2X3 320 aa14.63□□□□□ -0.07
SHKBP1-217ENST00000598558 HCN4Q9Y3Q4 1203 aa14.63□□□□□ -0.07
SHKBP1-217ENST00000598558 STON1Q9Y6Q2 735 aa14.63□□□□□ -0.07
SHKBP1-217ENST00000598558 R4GN57 208 aa14.63□□□□□ -0.07
SHKBP1-217ENST00000598558 KIAA1549LQ6ZVL6 1849 aa14.63□□□□□ -0.07
SHKBP1-217ENST00000598558 WDFY4Q6ZS81 3184 aa14.63□□□□□ -0.07
SHKBP1-217ENST00000598558 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP14.62□□□□□ -0.07
SHKBP1-217ENST00000598558 A0A0D9SEW6 157 aa14.62□□□□□ -0.07
SHKBP1-217ENST00000598558 CLDN11O75508 207 aa14.62□□□□□ -0.07
SHKBP1-217ENST00000598558 HLA-EP13747 358 aa14.62□□□□□ -0.07
SHKBP1-217ENST00000598558 PRKCHP24723 683 aa14.62□□□□□ -0.07
SHKBP1-217ENST00000598558 L1CAMP32004 1257 aa14.62□□□□□ -0.07
SHKBP1-217ENST00000598558 MAGEA1P43355 309 aa14.62□□□□□ -0.07
SHKBP1-217ENST00000598558 PLK1P53350 603 aa14.62□□□□□ -0.07
SHKBP1-217ENST00000598558 ZNF177Q13360 481 aaPredicted RBP14.62□□□□□ -0.07
SHKBP1-217ENST00000598558 ATP13A4Q4VNC1 1196 aa14.62□□□□□ -0.07
SHKBP1-217ENST00000598558 TTC39BQ5VTQ0 682 aaPredicted RBP14.62□□□□□ -0.07
SHKBP1-217ENST00000598558 RNF219Q5W0B1 726 aaPredicted RBP14.62□□□□□ -0.07
SHKBP1-217ENST00000598558 HEATR6Q6AI08 1181 aaKnown RBP14.62□□□□□ -0.07
SHKBP1-217ENST00000598558 LRRC31Q6UY01 552 aa14.62□□□□□ -0.07
SHKBP1-217ENST00000598558 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.62□□□□□ -0.07
SHKBP1-217ENST00000598558 CCDC170Q8IYT3 715 aa14.62□□□□□ -0.07
SHKBP1-217ENST00000598558 AHI1Q8N157 1196 aa14.62□□□□□ -0.07
SHKBP1-217ENST00000598558 ZNF366Q8N895 744 aa14.62□□□□□ -0.07
SHKBP1-217ENST00000598558 NIPA2Q8N8Q9 360 aa14.62□□□□□ -0.07
SHKBP1-217ENST00000598558 SLC35G2Q8TBE7 412 aa14.62□□□□□ -0.07
SHKBP1-217ENST00000598558 WFIKKN2Q8TEU8 576 aa14.62□□□□□ -0.07
SHKBP1-217ENST00000598558 CTNNBL1Q8WYA6 563 aaPredicted RBP14.62□□□□□ -0.07
SHKBP1-217ENST00000598558 KCTD15Q96SI1 283 aaPredicted RBP14.62□□□□□ -0.07
SHKBP1-217ENST00000598558 PSMB7Q99436 277 aa14.62□□□□□ -0.07
SHKBP1-217ENST00000598558 PRRX2Q99811 253 aa14.62□□□□□ -0.07
SHKBP1-217ENST00000598558 GABRG3Q99928 467 aa14.62□□□□□ -0.07
SHKBP1-217ENST00000598558 FEM1AQ9BSK4 669 aa14.62□□□□□ -0.07
SHKBP1-217ENST00000598558 ZYG11BQ9C0D3 744 aa14.62□□□□□ -0.07
SHKBP1-217ENST00000598558 GRPEL1Q9HAV7 217 aa14.62□□□□□ -0.07
SHKBP1-217ENST00000598558 PPARGC1AQ9UBK2 798 aaKnown RBP14.62□□□□□ -0.07
SHKBP1-217ENST00000598558 SLCO3A1Q9UIG8 710 aa14.62□□□□□ -0.07
SHKBP1-217ENST00000598558 USP18Q9UMW8 372 aa14.62□□□□□ -0.07
SHKBP1-217ENST00000598558 SLC8A2Q9UPR5 921 aa14.62□□□□□ -0.07
SHKBP1-217ENST00000598558 EPN1Q9Y6I3 576 aaPredicted RBP14.62□□□□□ -0.07
SHKBP1-217ENST00000598558 MIA3Q5JRA6 1907 aa14.61□□□□□ -0.07
SHKBP1-217ENST00000598558 A0A0U1RQJ8 604 aa14.61□□□□□ -0.07
SHKBP1-217ENST00000598558 TYW5A2RUC4 315 aaKnown RBP14.61□□□□□ -0.07
SHKBP1-217ENST00000598558 EIF3CLB5ME19 914 aaKnown RBP14.61□□□□□ -0.07
SHKBP1-217ENST00000598558 TIMM44O43615 452 aa14.61□□□□□ -0.07
SHKBP1-217ENST00000598558 RNF8O76064 485 aa14.61□□□□□ -0.07
SHKBP1-217ENST00000598558 NDUFA10O95299 355 aa14.61□□□□□ -0.07
SHKBP1-217ENST00000598558 DLDP09622 509 aaKnown RBP14.61□□□□□ -0.07
SHKBP1-217ENST00000598558 HOXA6P31267 233 aa14.61□□□□□ -0.07
SHKBP1-217ENST00000598558 PCK1P35558 622 aa14.61□□□□□ -0.07
SHKBP1-217ENST00000598558 STK19P49842 368 aaPredicted RBP14.61□□□□□ -0.07
SHKBP1-217ENST00000598558 PTPN5P54829 565 aa14.61□□□□□ -0.07
SHKBP1-217ENST00000598558 TAS2R40P59535 323 aa14.61□□□□□ -0.07
SHKBP1-217ENST00000598558 SLC25A11Q02978 314 aaKnown RBP14.61□□□□□ -0.07
SHKBP1-217ENST00000598558 SRSF5Q13243 272 aaKnown RBP14.61□□□□□ -0.07
SHKBP1-217ENST00000598558 PIGHQ14442 188 aaPredicted RBP14.61□□□□□ -0.07
SHKBP1-217ENST00000598558 EIF4HQ15056 248 aaKnown RBP14.61□□□□□ -0.07
SHKBP1-217ENST00000598558 ZNF528Q3MIS6 628 aa14.61□□□□□ -0.07
SHKBP1-217ENST00000598558 KCNT1Q5JUK3 1230 aa14.61□□□□□ -0.07
SHKBP1-217ENST00000598558 ERMARDQ5T6L9 678 aa14.61□□□□□ -0.07
SHKBP1-217ENST00000598558 NUDT18Q6ZVK8 323 aa14.61□□□□□ -0.07
SHKBP1-217ENST00000598558 TMTC1Q8IUR5 882 aa14.61□□□□□ -0.07
SHKBP1-217ENST00000598558 CHPFQ8IZ52 775 aa14.61□□□□□ -0.07
SHKBP1-217ENST00000598558 ZBTB44Q8NCP5 570 aa14.61□□□□□ -0.07
SHKBP1-217ENST00000598558 OR7D4Q8NG98 312 aa14.61□□□□□ -0.07
SHKBP1-217ENST00000598558 ATRIPQ8WXE1 791 aa14.61□□□□□ -0.07
SHKBP1-217ENST00000598558 ACDQ96AP0 544 aa14.61□□□□□ -0.07
SHKBP1-217ENST00000598558 EIF3CQ99613 913 aaKnown RBP14.61□□□□□ -0.07
SHKBP1-217ENST00000598558 SLC6A17Q9H1V8 727 aa14.61□□□□□ -0.07
SHKBP1-217ENST00000598558 TMEM245Q9H330 911 aa14.61□□□□□ -0.07
SHKBP1-217ENST00000598558 NOL6Q9H6R4 1146 aaKnown RBP14.61□□□□□ -0.07
SHKBP1-217ENST00000598558 UVRAGQ9P2Y5 699 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms