RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 ATG2AQ2TAZ0 1938 aa14.07□□□□□ -0.16
CCDC40-209ENST00000573474 OBSL1O75147 1896 aa14.06□□□□□ -0.16
CCDC40-209ENST00000573474 TNRC18O15417 2968 aaPredicted RBP14.06□□□□□ -0.16
CCDC40-209ENST00000573474 E2F8A0AVK6 867 aa14.06□□□□□ -0.16
CCDC40-209ENST00000573474 KCNN4O15554 427 aa14.06□□□□□ -0.16
CCDC40-209ENST00000573474 ERLIN1O75477 346 aa14.06□□□□□ -0.16
CCDC40-209ENST00000573474 CNTN5O94779 1100 aa14.06□□□□□ -0.16
CCDC40-209ENST00000573474 GLP2RO95838 553 aa14.06□□□□□ -0.16
CCDC40-209ENST00000573474 IFNB1P01574 187 aa14.06□□□□□ -0.16
CCDC40-209ENST00000573474 HOXB8P17481 243 aaPredicted RBP14.06□□□□□ -0.16
CCDC40-209ENST00000573474 CEBPBP17676 345 aa14.06□□□□□ -0.16
CCDC40-209ENST00000573474 RBL1P28749 1068 aa14.06□□□□□ -0.16
CCDC40-209ENST00000573474 WEE1P30291 646 aa14.06□□□□□ -0.16
CCDC40-209ENST00000573474 ADCY8P40145 1251 aa14.06□□□□□ -0.16
CCDC40-209ENST00000573474 RPL21P46778 160 aaKnown RBP14.06□□□□□ -0.16
CCDC40-209ENST00000573474 MAPKAPK2P49137 400 aa14.06□□□□□ -0.16
CCDC40-209ENST00000573474 CARSP49589 748 aaKnown RBP14.06□□□□□ -0.16
CCDC40-209ENST00000573474 NDST2P52849 883 aa14.06□□□□□ -0.16
CCDC40-209ENST00000573474 ADAM15Q13444 863 aa14.06□□□□□ -0.16
CCDC40-209ENST00000573474 PRKD1Q15139 912 aaPredicted RBP14.06□□□□□ -0.16
CCDC40-209ENST00000573474 TRIP13Q15645 432 aaPredicted RBP14.06□□□□□ -0.16
CCDC40-209ENST00000573474 ALFQ53S48 1182 aa14.06□□□□□ -0.16
CCDC40-209ENST00000573474 TTC39BQ5VTQ0 682 aaPredicted RBP14.06□□□□□ -0.16
CCDC40-209ENST00000573474 AFMIDQ63HM1 303 aa14.06□□□□□ -0.16
CCDC40-209ENST00000573474 B4GALNT4Q76KP1 1039 aa14.06□□□□□ -0.16
CCDC40-209ENST00000573474 GPR149Q86SP6 731 aa14.06□□□□□ -0.16
CCDC40-209ENST00000573474 LRRC49Q8IUZ0 686 aa14.06□□□□□ -0.16
CCDC40-209ENST00000573474 ARHGAP12Q8IWW6 846 aa14.06□□□□□ -0.16
CCDC40-209ENST00000573474 FAM217AQ8IXS0 508 aa14.06□□□□□ -0.16
CCDC40-209ENST00000573474 UMODL1-AS1Q8N2C9 162 aa14.06□□□□□ -0.16
CCDC40-209ENST00000573474 CCDC33Q8N5R6 958 aa14.06□□□□□ -0.16
CCDC40-209ENST00000573474 BBOF1Q8ND07 529 aa14.06□□□□□ -0.16
CCDC40-209ENST00000573474 CCNYQ8ND76 341 aa14.06□□□□□ -0.16
CCDC40-209ENST00000573474 ITFG1Q8TB96 612 aa14.06□□□□□ -0.16
CCDC40-209ENST00000573474 SH3RF2Q8TEC5 729 aa14.06□□□□□ -0.16
CCDC40-209ENST00000573474 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.06□□□□□ -0.16
CCDC40-209ENST00000573474 ANKRD7Q92527 254 aa14.06□□□□□ -0.16
CCDC40-209ENST00000573474 LRRC45Q96CN5 670 aa14.06□□□□□ -0.16
CCDC40-209ENST00000573474 MYEOVQ96EZ4 313 aa14.06□□□□□ -0.16
CCDC40-209ENST00000573474 LGMNQ99538 433 aa14.06□□□□□ -0.16
CCDC40-209ENST00000573474 TDP1Q9NUW8 608 aa14.06□□□□□ -0.16
CCDC40-209ENST00000573474 WHRNQ9P202 907 aa14.06□□□□□ -0.16
CCDC40-209ENST00000573474 ZFP37Q9Y6Q3 630 aaPredicted RBP14.06□□□□□ -0.16
CCDC40-209ENST00000573474 DENND4CQ5VZ89 1909 aa14.05□□□□□ -0.16
CCDC40-209ENST00000573474 TRANK1O15050 2925 aa14.05□□□□□ -0.16
CCDC40-209ENST00000573474 CCDC151A5D8V7 595 aa14.05□□□□□ -0.16
CCDC40-209ENST00000573474 LINC01565O15544 149 aa14.05□□□□□ -0.16
CCDC40-209ENST00000573474 CLDN11O75508 207 aa14.05□□□□□ -0.16
CCDC40-209ENST00000573474 ZSCAN5DPP0CG00 497 aa14.05□□□□□ -0.16
CCDC40-209ENST00000573474 ETS1P14921 441 aa14.05□□□□□ -0.16
CCDC40-209ENST00000573474 H2AFXP16104 143 aaPredicted RBP14.05□□□□□ -0.16
CCDC40-209ENST00000573474 ITIH2P19823 946 aa14.05□□□□□ -0.16
CCDC40-209ENST00000573474 FSHRP23945 695 aa14.05□□□□□ -0.16
CCDC40-209ENST00000573474 RPL22P35268 128 aaKnown RBP14.05□□□□□ -0.16
CCDC40-209ENST00000573474 ACTN2P35609 894 aa14.05□□□□□ -0.16
CCDC40-209ENST00000573474 GARSP41250 739 aaKnown RBP14.05□□□□□ -0.16
CCDC40-209ENST00000573474 IRAK1P51617 712 aa14.05□□□□□ -0.16
CCDC40-209ENST00000573474 GDF10P55107 478 aa14.05□□□□□ -0.16
CCDC40-209ENST00000573474 CDH4P55283 916 aa14.05□□□□□ -0.16
CCDC40-209ENST00000573474 ZNF33AQ06730 810 aa14.05□□□□□ -0.16
CCDC40-209ENST00000573474 PPIDQ08752 370 aaKnown RBP14.05□□□□□ -0.16
CCDC40-209ENST00000573474 AP1B1Q10567 949 aa14.05□□□□□ -0.16
CCDC40-209ENST00000573474 TRADDQ15628 312 aa14.05□□□□□ -0.16
CCDC40-209ENST00000573474 KCTD19Q17RG1 926 aaPredicted RBP14.05□□□□□ -0.16
CCDC40-209ENST00000573474 HEATR6Q6AI08 1181 aaKnown RBP14.05□□□□□ -0.16
CCDC40-209ENST00000573474 SYCE2Q6PIF2 218 aa14.05□□□□□ -0.16
CCDC40-209ENST00000573474 C4orf22Q6V702 233 aa14.05□□□□□ -0.16
CCDC40-209ENST00000573474 CHST9Q7L1S5 443 aa14.05□□□□□ -0.16
CCDC40-209ENST00000573474 TFAP2DQ7Z6R9 452 aa14.05□□□□□ -0.16
CCDC40-209ENST00000573474 TP53INP2Q8IXH6 220 aa14.05□□□□□ -0.16
CCDC40-209ENST00000573474 GLIS1Q8NBF1 620 aa14.05□□□□□ -0.16
CCDC40-209ENST00000573474 NETO2Q8NC67 525 aa14.05□□□□□ -0.16
CCDC40-209ENST00000573474 HTR3CQ8WXA8 447 aa14.05□□□□□ -0.16
CCDC40-209ENST00000573474 USP13Q92995 863 aaPredicted RBP14.05□□□□□ -0.16
CCDC40-209ENST00000573474 HDAC11Q96DB2 347 aa14.05□□□□□ -0.16
CCDC40-209ENST00000573474 SNF8Q96H20 258 aa14.05□□□□□ -0.16
CCDC40-209ENST00000573474 CELF6Q96J87 481 aaKnown RBP14.05□□□□□ -0.16
CCDC40-209ENST00000573474 ZSWIM3Q96MP5 696 aa14.05□□□□□ -0.16
CCDC40-209ENST00000573474 TSGA13Q96PP4 275 aa14.05□□□□□ -0.16
CCDC40-209ENST00000573474 FAM129AQ9BZQ8 928 aa14.05□□□□□ -0.16
CCDC40-209ENST00000573474 SMG9Q9H0W8 520 aaKnown RBP14.05□□□□□ -0.16
CCDC40-209ENST00000573474 NDFIP2Q9NV92 336 aa14.05□□□□□ -0.16
CCDC40-209ENST00000573474 ZNF212Q9UDV6 495 aa14.05□□□□□ -0.16
CCDC40-209ENST00000573474 COLQQ9Y215 455 aaPredicted RBP14.05□□□□□ -0.16
CCDC40-209ENST00000573474 PDE4DIPQ5VU43 2346 aa14.04□□□□□ -0.16
CCDC40-209ENST00000573474 C5orf60A6NFR6 353 aa14.04□□□□□ -0.16
CCDC40-209ENST00000573474 DFFAO00273 331 aa14.04□□□□□ -0.16
CCDC40-209ENST00000573474 GFRA2O00451 464 aa14.04□□□□□ -0.16
CCDC40-209ENST00000573474 TRDMT1O14717 391 aaKnown RBP14.04□□□□□ -0.16
CCDC40-209ENST00000573474 NDC80O14777 642 aa14.04□□□□□ -0.16
CCDC40-209ENST00000573474 MTSS1O43312 755 aa14.04□□□□□ -0.16
CCDC40-209ENST00000573474 TSPAN3O60637 253 aa14.04□□□□□ -0.16
CCDC40-209ENST00000573474 GCATO75600 419 aa14.04□□□□□ -0.16
CCDC40-209ENST00000573474 STK10O94804 968 aaKnown RBP14.04□□□□□ -0.16
CCDC40-209ENST00000573474 TCF3P15923 654 aa14.04□□□□□ -0.16
CCDC40-209ENST00000573474 POU3F3P20264 500 aaPredicted RBP14.04□□□□□ -0.16
CCDC40-209ENST00000573474 IVDP26440 423 aa14.04□□□□□ -0.16
CCDC40-209ENST00000573474 OR1E1P30953 314 aa14.04□□□□□ -0.16
CCDC40-209ENST00000573474 CHKAP35790 457 aa14.04□□□□□ -0.16
CCDC40-209ENST00000573474 VPS41P49754 854 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms