RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 GRTP1Q5TC63 336 aa14.3□□□□□ -0.12
VPS9D1-202ENST00000561976 C16orf89Q6UX73 402 aa14.3□□□□□ -0.12
VPS9D1-202ENST00000561976 CCDC185Q8N715 623 aa14.3□□□□□ -0.12
VPS9D1-202ENST00000561976 C7orf31Q8N865 590 aa14.3□□□□□ -0.12
VPS9D1-202ENST00000561976 PRICKLE1Q96MT3 831 aaPredicted RBP14.3□□□□□ -0.12
VPS9D1-202ENST00000561976 CDRT15Q96T59 188 aa14.3□□□□□ -0.12
VPS9D1-202ENST00000561976 CPNE1Q99829 537 aa14.3□□□□□ -0.12
VPS9D1-202ENST00000561976 NAT9Q9BTE0 207 aa14.3□□□□□ -0.12
VPS9D1-202ENST00000561976 SLC4A5Q9BY07 1137 aa14.3□□□□□ -0.12
VPS9D1-202ENST00000561976 WDR55Q9H6Y2 383 aaPredicted RBP14.3□□□□□ -0.12
VPS9D1-202ENST00000561976 PRMT7Q9NVM4 692 aaPredicted RBP14.3□□□□□ -0.12
VPS9D1-202ENST00000561976 SOWAHBA6NEL2 793 aa14.3□□□□□ -0.12
VPS9D1-202ENST00000561976 KPNA7A9QM74 516 aa14.3□□□□□ -0.12
VPS9D1-202ENST00000561976 DENRO43583 198 aaKnown RBP14.3□□□□□ -0.12
VPS9D1-202ENST00000561976 DNAJA2O60884 412 aa14.3□□□□□ -0.12
VPS9D1-202ENST00000561976 CD1EP15812 388 aa14.3□□□□□ -0.12
VPS9D1-202ENST00000561976 PIK3R1P27986 724 aa14.3□□□□□ -0.12
VPS9D1-202ENST00000561976 ABCG1P45844 678 aa14.3□□□□□ -0.12
VPS9D1-202ENST00000561976 SERPINB8P50452 374 aa14.3□□□□□ -0.12
VPS9D1-202ENST00000561976 GTF2A2P52657 109 aa14.3□□□□□ -0.12
VPS9D1-202ENST00000561976 SNX16P57768 344 aa14.3□□□□□ -0.12
VPS9D1-202ENST00000561976 PPM1LQ5SGD2 360 aa14.3□□□□□ -0.12
VPS9D1-202ENST00000561976 STRA8Q7Z7C7 330 aa14.3□□□□□ -0.12
VPS9D1-202ENST00000561976 TMEM110Q86TL2 294 aa14.3□□□□□ -0.12
VPS9D1-202ENST00000561976 HACE1Q8IYU2 909 aa14.3□□□□□ -0.12
VPS9D1-202ENST00000561976 KYQ8NBH2 561 aa14.3□□□□□ -0.12
VPS9D1-202ENST00000561976 DNAJC1Q96KC8 554 aaKnown RBP14.3□□□□□ -0.12
VPS9D1-202ENST00000561976 GPR20Q99678 358 aa14.3□□□□□ -0.12
VPS9D1-202ENST00000561976 FERMT1Q9BQL6 677 aa14.3□□□□□ -0.12
VPS9D1-202ENST00000561976 GRIP2Q9C0E4 1043 aa14.3□□□□□ -0.12
VPS9D1-202ENST00000561976 EPB41L1Q9H4G0 881 aa14.3□□□□□ -0.12
VPS9D1-202ENST00000561976 COPS7BQ9H9Q2 264 aaPredicted RBP14.3□□□□□ -0.12
VPS9D1-202ENST00000561976 ACSS2Q9NR19 701 aa14.3□□□□□ -0.12
VPS9D1-202ENST00000561976 MTMR10Q9NXD2 777 aa14.3□□□□□ -0.12
VPS9D1-202ENST00000561976 UBAP1Q9NZ09 502 aa14.3□□□□□ -0.12
VPS9D1-202ENST00000561976 AP4B1Q9Y6B7 739 aa14.3□□□□□ -0.12
VPS9D1-202ENST00000561976 BRWD3Q6RI45 1802 aa14.3□□□□□ -0.12
VPS9D1-202ENST00000561976 ATP9BO43861 1147 aa14.29□□□□□ -0.12
VPS9D1-202ENST00000561976 ARIH2O95376 493 aa14.29□□□□□ -0.12
VPS9D1-202ENST00000561976 CRTAMO95727 393 aa14.29□□□□□ -0.12
VPS9D1-202ENST00000561976 ASLP04424 464 aa14.29□□□□□ -0.12
VPS9D1-202ENST00000561976 SRGAP2BP0DMP2 458 aa14.29□□□□□ -0.12
VPS9D1-202ENST00000561976 TGFB3P10600 412 aa14.29□□□□□ -0.12
VPS9D1-202ENST00000561976 MCF2P10911 925 aa14.29□□□□□ -0.12
VPS9D1-202ENST00000561976 LCP1P13796 627 aa14.29□□□□□ -0.12
VPS9D1-202ENST00000561976 SPRP35270 261 aaPredicted RBP14.29□□□□□ -0.12
VPS9D1-202ENST00000561976 TTLL12Q14166 644 aaPredicted RBP14.29□□□□□ -0.12
VPS9D1-202ENST00000561976 METTL21CQ5VZV1 264 aa14.29□□□□□ -0.12
VPS9D1-202ENST00000561976 IYDQ6PHW0 289 aa14.29□□□□□ -0.12
VPS9D1-202ENST00000561976 BNC2Q6ZN30 1099 aaPredicted RBP14.29□□□□□ -0.12
VPS9D1-202ENST00000561976 TTC39CQ8N584 583 aa14.29□□□□□ -0.12
VPS9D1-202ENST00000561976 RNF148Q8N7C7 305 aa14.29□□□□□ -0.12
VPS9D1-202ENST00000561976 MRPL45Q9BRJ2 306 aaKnown RBP14.29□□□□□ -0.12
VPS9D1-202ENST00000561976 CAB39LQ9H9S4 337 aa14.29□□□□□ -0.12
VPS9D1-202ENST00000561976 PTTG2Q9NZH5 202 aa14.29□□□□□ -0.12
VPS9D1-202ENST00000561976 PRPF19Q9UMS4 504 aaKnown RBP14.29□□□□□ -0.12
VPS9D1-202ENST00000561976 MAGED2Q9UNF1 606 aaPredicted RBP14.29□□□□□ -0.12
VPS9D1-202ENST00000561976 SNX9Q9Y5X1 595 aa14.29□□□□□ -0.12
VPS9D1-202ENST00000561976 A0A096LPK6 155 aa14.29□□□□□ -0.12
VPS9D1-202ENST00000561976 HACD1B0YJ81 288 aa14.29□□□□□ -0.12
VPS9D1-202ENST00000561976 FBXO21O94952 628 aa14.29□□□□□ -0.12
VPS9D1-202ENST00000561976 TFAP2AP05549 437 aa14.29□□□□□ -0.12
VPS9D1-202ENST00000561976 THOP1P52888 689 aa14.29□□□□□ -0.12
VPS9D1-202ENST00000561976 PKNOX1P55347 436 aa14.29□□□□□ -0.12
VPS9D1-202ENST00000561976 IFRD2Q12894 506 aaPredicted RBP14.29□□□□□ -0.12
VPS9D1-202ENST00000561976 NADK2Q4G0N4 442 aa14.29□□□□□ -0.12
VPS9D1-202ENST00000561976 B3GNT6Q6ZMB0 384 aa14.29□□□□□ -0.12
VPS9D1-202ENST00000561976 DSELQ8IZU8 1212 aa14.29□□□□□ -0.12
VPS9D1-202ENST00000561976 SLC35F5Q8WV83 523 aa14.29□□□□□ -0.12
VPS9D1-202ENST00000561976 USP13Q92995 863 aaPredicted RBP14.29□□□□□ -0.12
VPS9D1-202ENST00000561976 ZNF669Q96BR6 464 aaPredicted RBP14.29□□□□□ -0.12
VPS9D1-202ENST00000561976 P2RY11Q96G91 374 aa14.29□□□□□ -0.12
VPS9D1-202ENST00000561976 TMCO1Q9UM00 188 aa14.29□□□□□ -0.12
VPS9D1-202ENST00000561976 PCDHGB4Q9UN71 923 aa14.29□□□□□ -0.12
VPS9D1-202ENST00000561976 PCDHGB5Q9Y5G0 923 aa14.29□□□□□ -0.12
VPS9D1-202ENST00000561976 RGSL1A5PLK6 1076 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 VILLO15195 856 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 MFSD11O43934 449 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 TRIM13O60858 407 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 ENO3P13929 434 aaPredicted RBP14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 CCDC130P13994 396 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 PTPN9P43378 593 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 PHKA2P46019 1235 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 IRF9Q00978 393 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 OLIG2Q13516 323 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 DLG2Q15700 870 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 PABPC1LQ4VXU2 614 aaKnown RBP14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 LCA5Q86VQ0 697 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 FAM131BQ86XD5 332 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 GALNT4Q8N4A0 578 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 LENG1Q96BZ8 264 aaPredicted RBP14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 MOCOSQ96EN8 888 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 KIF12Q96FN5 646 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 SPATA33Q96N06 139 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 AGAP3Q96P47 875 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 RBBP8Q99708 897 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 LPIN3Q9BQK8 851 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 ILKAPQ9H0C8 392 aaPredicted RBP14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 RAB26Q9ULW5 256 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 PHF24Q9UPV7 400 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms