RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 RAB6CQ53S08 254 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 EGFLAMQ63HQ2 1017 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 MBLAC2Q68D91 279 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 CXorf57Q6NSI4 855 aaKnown RBP13.39□□□□□ -0.27
NEDD8-208ENST00000560427 PKN3Q6P5Z2 889 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 C14orf80Q86SX3 495 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 ADIPOR2Q86V24 386 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 SFTPA1Q8IWL2 248 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 CHPFQ8IZ52 775 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 MAML2Q8IZL2 1156 aaPredicted RBP13.39□□□□□ -0.27
NEDD8-208ENST00000560427 ALLCQ8N6M5 410 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 KDM1BQ8NB78 822 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 TXNDC5Q8NBS9 432 aaKnown RBP13.39□□□□□ -0.27
NEDD8-208ENST00000560427 RFFLQ8WZ73 363 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 TTC17Q96AE7 1141 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 TBC1D31Q96DN5 1066 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 EPAS1Q99814 870 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 GABRG3Q99928 467 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 BAG1Q99933 345 aaPredicted RBP13.39□□□□□ -0.27
NEDD8-208ENST00000560427 PACSIN1Q9BY11 444 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 TRIM7Q9C029 511 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 CIPCQ9C0C6 399 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 RAB6CQ9H0N0 254 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 GRPEL1Q9HAV7 217 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 TMPRSS4Q9NRS4 437 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 DONSONQ9NYP3 566 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 THAP10Q9P2Z0 257 aaPredicted RBP13.39□□□□□ -0.27
NEDD8-208ENST00000560427 MYOFQ9NZM1 2061 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 K7ESF4 209 aa13.38□□□□□ -0.27
NEDD8-208ENST00000560427 LRIG2O94898 1065 aa13.38□□□□□ -0.27
NEDD8-208ENST00000560427 DLDP09622 509 aaKnown RBP13.38□□□□□ -0.27
NEDD8-208ENST00000560427 SP9P0CG40 484 aa13.38□□□□□ -0.27
NEDD8-208ENST00000560427 TDGF1P13385 188 aa13.38□□□□□ -0.27
NEDD8-208ENST00000560427 RHOQP17081 205 aa13.38□□□□□ -0.27
NEDD8-208ENST00000560427 COL9A1P20849 921 aa13.38□□□□□ -0.27
NEDD8-208ENST00000560427 MIPP30301 263 aa13.38□□□□□ -0.27
NEDD8-208ENST00000560427 MAN1A1P33908 653 aa13.38□□□□□ -0.27
NEDD8-208ENST00000560427 ARHGAP25P42331 645 aa13.38□□□□□ -0.27
NEDD8-208ENST00000560427 MAPKAPK2P49137 400 aa13.38□□□□□ -0.27
NEDD8-208ENST00000560427 CSTF1Q05048 431 aaKnown RBP13.38□□□□□ -0.27
NEDD8-208ENST00000560427 CRY1Q16526 586 aa13.38□□□□□ -0.27
NEDD8-208ENST00000560427 FUT11Q495W5 492 aa13.38□□□□□ -0.27
NEDD8-208ENST00000560427 BOLA3Q53S33 107 aa13.38□□□□□ -0.27
NEDD8-208ENST00000560427 ALFQ53S48 1182 aa13.38□□□□□ -0.27
NEDD8-208ENST00000560427 FSCBQ5H9T9 825 aa13.38□□□□□ -0.27
NEDD8-208ENST00000560427 PITRM1Q5JRX3 1037 aa13.38□□□□□ -0.27
NEDD8-208ENST00000560427 TMEM215Q68D42 235 aa13.38□□□□□ -0.27
NEDD8-208ENST00000560427 ZC3H14Q6PJT7 736 aaKnown RBP13.38□□□□□ -0.27
NEDD8-208ENST00000560427 ARFGAP1Q8N6T3 406 aa13.38□□□□□ -0.27
NEDD8-208ENST00000560427 SPC24Q8NBT2 197 aa13.38□□□□□ -0.27
NEDD8-208ENST00000560427 NELL1Q92832 810 aa13.38□□□□□ -0.27
NEDD8-208ENST00000560427 CALR3Q96L12 384 aaKnown RBP13.38□□□□□ -0.27
NEDD8-208ENST00000560427 POLMQ9NP87 494 aaPredicted RBP13.38□□□□□ -0.27
NEDD8-208ENST00000560427 HCN2Q9UL51 889 aa13.38□□□□□ -0.27
NEDD8-208ENST00000560427 USP18Q9UMW8 372 aa13.38□□□□□ -0.27
NEDD8-208ENST00000560427 PLA2G4CQ9UP65 541 aa13.38□□□□□ -0.27
NEDD8-208ENST00000560427 AP4E1Q9UPM8 1137 aa13.38□□□□□ -0.27
NEDD8-208ENST00000560427 NEU3Q9UQ49 428 aa13.38□□□□□ -0.27
NEDD8-208ENST00000560427 MUC6Q6W4X9 2439 aa13.37□□□□□ -0.27
NEDD8-208ENST00000560427 SOWAHDA6NJG2 315 aa13.37□□□□□ -0.27
NEDD8-208ENST00000560427 SGK1O00141 431 aa13.37□□□□□ -0.27
NEDD8-208ENST00000560427 FGF10O15520 208 aaPredicted RBP13.37□□□□□ -0.27
NEDD8-208ENST00000560427 SRGAP2O75044 1071 aa13.37□□□□□ -0.27
NEDD8-208ENST00000560427 ADAM23O75077 832 aa13.37□□□□□ -0.27
NEDD8-208ENST00000560427 ALDH1A2O94788 518 aa13.37□□□□□ -0.27
NEDD8-208ENST00000560427 PROSCO94903 275 aa13.37□□□□□ -0.27
NEDD8-208ENST00000560427 NDUFA10O95299 355 aa13.37□□□□□ -0.27
NEDD8-208ENST00000560427 APBB3O95704 486 aa13.37□□□□□ -0.27
NEDD8-208ENST00000560427 RHOCP08134 193 aa13.37□□□□□ -0.27
NEDD8-208ENST00000560427 SRPRAP08240 638 aaKnown RBP13.37□□□□□ -0.27
NEDD8-208ENST00000560427 HOXB2P14652 356 aa13.37□□□□□ -0.27
NEDD8-208ENST00000560427 ETFBP38117 255 aa13.37□□□□□ -0.27
NEDD8-208ENST00000560427 CSKP41240 450 aa13.37□□□□□ -0.27
NEDD8-208ENST00000560427 MAGEA1P43355 309 aa13.37□□□□□ -0.27
NEDD8-208ENST00000560427 VASPP50552 380 aaPredicted RBP13.37□□□□□ -0.27
NEDD8-208ENST00000560427 IRAK1P51617 712 aa13.37□□□□□ -0.27
NEDD8-208ENST00000560427 HADHBP55084 474 aaKnown RBP13.37□□□□□ -0.27
NEDD8-208ENST00000560427 SEMA3BQ13214 749 aa13.37□□□□□ -0.27
NEDD8-208ENST00000560427 ZNF234Q14588 700 aa13.37□□□□□ -0.27
NEDD8-208ENST00000560427 HADHQ16836 314 aaKnown RBP13.37□□□□□ -0.27
NEDD8-208ENST00000560427 ARTNQ5T4W7 220 aa13.37□□□□□ -0.27
NEDD8-208ENST00000560427 ERMARDQ5T6L9 678 aa13.37□□□□□ -0.27
NEDD8-208ENST00000560427 EMC10Q5UCC4 262 aa13.37□□□□□ -0.27
NEDD8-208ENST00000560427 CIR1Q86X95 450 aaPredicted RBP13.37□□□□□ -0.27
NEDD8-208ENST00000560427 TXLNBQ8N3L3 684 aa13.37□□□□□ -0.27
NEDD8-208ENST00000560427 TSTD1Q8NFU3 115 aa13.37□□□□□ -0.27
NEDD8-208ENST00000560427 TEKT4Q8WW24 435 aa13.37□□□□□ -0.27
NEDD8-208ENST00000560427 SNRNP25Q9BV90 132 aaKnown RBP13.37□□□□□ -0.27
NEDD8-208ENST00000560427 CATSPERBQ9H7T0 1116 aa13.37□□□□□ -0.27
NEDD8-208ENST00000560427 TMEM248Q9NWD8 314 aa13.37□□□□□ -0.27
NEDD8-208ENST00000560427 ZSCAN32Q9NX65 697 aa13.37□□□□□ -0.27
NEDD8-208ENST00000560427 ZNF212Q9UDV6 495 aa13.37□□□□□ -0.27
NEDD8-208ENST00000560427 EBF1Q9UH73 591 aa13.37□□□□□ -0.27
NEDD8-208ENST00000560427 INTS6Q9UL03 887 aaKnown RBP13.37□□□□□ -0.27
NEDD8-208ENST00000560427 PCDHGA2Q9Y5H1 932 aa13.37□□□□□ -0.27
NEDD8-208ENST00000560427 SNX10Q9Y5X0 201 aa13.37□□□□□ -0.27
NEDD8-208ENST00000560427 EPN1Q9Y6I3 576 aaPredicted RBP13.37□□□□□ -0.27
NEDD8-208ENST00000560427 STON1Q9Y6Q2 735 aa13.37□□□□□ -0.27
NEDD8-208ENST00000560427 A0A0A6YYK5 440 aaPredicted RBP13.36□□□□□ -0.27
NEDD8-208ENST00000560427 CXorf51AA0A1B0GTR3 108 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms