RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 TJAP1Q5JTD0 557 aa8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 ALKAL1Q6UXT8 129 aa8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 RFPL4BQ6ZWI9 263 aa8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 TRMT10CQ7L0Y3 403 aaKnown RBP8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 VASH1Q7L8A9 365 aaPredicted RBP8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 C4orf33Q8N1A6 199 aa8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 CDC26Q8NHZ8 85 aa8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 HAPLN3Q96S86 360 aa8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 CIB1Q99828 191 aa8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 C11orf70Q9BRQ4 267 aa8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 BTBD10Q9BSF8 475 aa8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 SMYD3Q9H7B4 428 aa8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 C12orf4Q9NQ89 552 aa8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 STX18Q9P2W9 335 aaKnown RBP8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 HSFX1Q9UBD0 423 aa8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 DSEQ9UL01 958 aa8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 TDRKHQ9Y2W6 561 aaKnown RBP8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 SNX5Q9Y5X3 404 aa8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 TNPO2O14787 897 aaKnown RBP8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 GSC2O15499 205 aa8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 TREHO43280 583 aa8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 CA12O43570 354 aa8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 RNASEH1O60930 286 aaKnown RBP8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 SERPINB7O75635 380 aa8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 USP1O94782 785 aa8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 PGM3O95394 542 aa8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 KRT10P13645 584 aa8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 AMPD1P23109 780 aa8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 SREBF2Q12772 1141 aa8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 NFX1Q12986 1120 aaKnown RBP8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 TMEM132DQ14C87 1099 aa8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 SIX1Q15475 284 aaPredicted RBP8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 GSTA3Q16772 222 aa8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 CEP68Q76N32 757 aa8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 CFAP61Q8NHU2 1237 aa8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 DIS3LQ8TF46 1054 aaKnown RBP8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 NCSTNQ92542 709 aa8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 MED30Q96HR3 178 aa8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 PHF12Q96QT6 1004 aa8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 TWNKQ96RR1 684 aa8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 OSMRQ99650 979 aa8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 ARL8BQ9NVJ2 186 aa8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 TBCCD1Q9NVR7 557 aa8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 ANAPC7Q9UJX3 599 aa8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 ITGA11Q9UKX5 1188 aa8.2□□□□□ -1.1
PDLIM5-221ENST00000542407 GOLGA8CPA6NN73 597 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 KMOO15229 486 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 CILPO75339 1184 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 MYL3P08590 195 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 CHRNB1P11230 501 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 MTHFRP42898 656 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 KPNA1P52294 538 aaPredicted RBP8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 BLVRAP53004 296 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 CDH8P55286 799 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 NKX3-2P78367 333 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 HPCAP84074 193 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 CDC42EP1Q00587 391 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 PCBP1Q15365 356 aaKnown RBP eCLIP8.19□□□□□ -1.15e-8■■■■■ 41.6
PDLIM5-221ENST00000542407 ZBTB6Q15916 424 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 FSCN1Q16658 493 aaKnown RBP8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 NDUFA5Q16718 116 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 METTL21CQ5VZV1 264 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 CYP4F22Q6NT55 531 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 SLC27A1Q6PCB7 646 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 CLNKQ7Z7G1 428 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 PHLDB2Q86SQ0 1253 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 METTL3Q86U44 580 aaKnown RBP8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 UBL4BQ8N7F7 174 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 SLC4A11Q8NBS3 891 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 STKLD1Q8NE28 680 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 DNAJB3Q8WWF6 145 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 TRIB2Q92519 343 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 ART4Q93070 314 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 HHIPL1Q96JK4 782 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 C9orf72Q96LT7 481 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 GCOM2Q9BZD3 368 aaPredicted RBP8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 CNGB3Q9NQW8 809 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 HACD3Q9P035 362 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 NXF1Q9UBU9 619 aaKnown RBP8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 CYTH4Q9UIA0 394 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 POC1B-GALNT4F8VUJ3 575 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 PROSCO94903 275 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 HAUS5O94927 633 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 KRT19P08727 400 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 KRT15P19012 456 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 POLR2BP30876 1174 aaKnown RBP8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 PGM1P36871 562 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 TMED10P49755 219 aaKnown RBP8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 COG7P83436 770 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 ZNF252P-AS1Q0IIN9 211 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 INCA1Q0VD86 236 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 SNX17Q15036 470 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 ZNF667Q5HYK9 610 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 HP1BP3Q5SSJ5 553 aaPredicted RBP8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 UBXN11Q5T124 520 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 SEL1L2Q5TEA6 688 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 FYB2Q5VWT5 728 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 PPP1R2P3Q6NXS1 205 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 GALNT7Q86SF2 657 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 SPATA2LQ8IUW3 424 aaPredicted RBP8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms