RNA–Protein interactions for RNA: ENST00000524356.1

PCM1-223, Transcript of pericentriolar material 1, human

TSL 2

Gene PCM1, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PCM1-223	ENST00000524356	POMC	P01189	267 aa		4.69	□□□□□ -1.66
PCM1-223	ENST00000524356	APOA4	P06727	396 aa		4.69	□□□□□ -1.66
PCM1-223	ENST00000524356	CLTB	P09497	229 aa		4.69	□□□□□ -1.66
PCM1-223	ENST00000524356	CKB	P12277	381 aa		4.69	□□□□□ -1.66
PCM1-223	ENST00000524356	MYL4	P12829	197 aa		4.69	□□□□□ -1.66
PCM1-223	ENST00000524356	POR	P16435	677 aa	Predicted RBP	4.69	□□□□□ -1.66
PCM1-223	ENST00000524356	IL11	P20809	199 aa		4.69	□□□□□ -1.66
PCM1-223	ENST00000524356	CST5	P28325	142 aa	Predicted RBP	4.69	□□□□□ -1.66
PCM1-223	ENST00000524356	VAMP2	P63027	116 aa		4.69	□□□□□ -1.66
PCM1-223	ENST00000524356	CHRND	Q07001	517 aa		4.69	□□□□□ -1.66
PCM1-223	ENST00000524356	NEXN	Q0ZGT2	675 aa		4.69	□□□□□ -1.66
PCM1-223	ENST00000524356	CUL4B	Q13620	913 aa		4.69	□□□□□ -1.66
PCM1-223	ENST00000524356	SCARB2	Q14108	478 aa		4.69	□□□□□ -1.66
PCM1-223	ENST00000524356	ATP2B3	Q16720	1220 aa		4.69	□□□□□ -1.66
PCM1-223	ENST00000524356	ARHGAP15	Q53QZ3	475 aa		4.69	□□□□□ -1.66
PCM1-223	ENST00000524356	CEP78	Q5JTW2	689 aa		4.69	□□□□□ -1.66
PCM1-223	ENST00000524356	GALNTL5	Q7Z4T8	443 aa		4.69	□□□□□ -1.66
PCM1-223	ENST00000524356	GLIS1	Q8NBF1	620 aa		4.69	□□□□□ -1.66
PCM1-223	ENST00000524356	THAP4	Q8WY91	577 aa		4.69	□□□□□ -1.66
PCM1-223	ENST00000524356	CCDC47	Q96A33	483 aa	Known RBP	4.69	□□□□□ -1.66
PCM1-223	ENST00000524356	NSUN4	Q96CB9	384 aa	Known RBP	4.69	□□□□□ -1.66
PCM1-223	ENST00000524356	SNX22	Q96L94	193 aa		4.69	□□□□□ -1.66
PCM1-223	ENST00000524356	COG8	Q96MW5	612 aa		4.69	□□□□□ -1.66
PCM1-223	ENST00000524356	TWNK	Q96RR1	684 aa		4.69	□□□□□ -1.66
PCM1-223	ENST00000524356	P2RX7	Q99572	595 aa	Known RBP	4.69	□□□□□ -1.66
PCM1-223	ENST00000524356	GPATCH1	Q9BRR8	931 aa	Known RBP	4.69	□□□□□ -1.66
PCM1-223	ENST00000524356	DESI2	Q9BSY9	194 aa		4.69	□□□□□ -1.66
PCM1-223	ENST00000524356	VPS16	Q9H269	839 aa		4.69	□□□□□ -1.66
PCM1-223	ENST00000524356	CXorf56	Q9H5V9	222 aa		4.69	□□□□□ -1.66
PCM1-223	ENST00000524356	SAYSD1	Q9NPB0	183 aa		4.69	□□□□□ -1.66
PCM1-223	ENST00000524356	PNPO	Q9NVS9	261 aa		4.69	□□□□□ -1.66
PCM1-223	ENST00000524356	NIPSNAP3A	Q9UFN0	247 aa	Predicted RBP	4.69	□□□□□ -1.66
PCM1-223	ENST00000524356	FEZ2	Q9UHY8	353 aa	Predicted RBP	4.69	□□□□□ -1.66
PCM1-223	ENST00000524356	PCDHA6	Q9UN73	950 aa		4.69	□□□□□ -1.66
PCM1-223	ENST00000524356	CNPY2	Q9Y2B0	182 aa		4.69	□□□□□ -1.66
PCM1-223	ENST00000524356	NSD2	O96028	1365 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	HMX3	A6NHT5	357 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	CLCA1	A8K7I4	914 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	PPP6C	O00743	305 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	HMMR	O75330	724 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	TMEM63A	O94886	807 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	MT-ND5	P03915	603 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	ANXA2	P07355	339 aa	Known RBP	4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	CHRM2	P08172	466 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	CSF1	P09603	554 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	KCNA3	P22001	575 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	TNNT3	P45378	269 aa	Predicted RBP	4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	CCR9	P51686	369 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	NOMO3	P69849	1222 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	MGAT2	Q10469	447 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	SP140	Q13342	867 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	SLC12A1	Q13621	1099 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	NOMO1	Q15155	1222 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	PTPRR	Q15256	657 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	MUM1L1	Q5H9M0	696 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	NOMO2	Q5JPE7	1267 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	SNX30	Q5VWJ9	437 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	RRAGB	Q5VZM2	374 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	CATSPERG	Q6ZRH7	1159 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	BEND5	Q7L4P6	421 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	KRT74	Q7RTS7	529 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	DNAJB7	Q7Z6W7	309 aa	Predicted RBP	4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	CARNMT1	Q8N4J0	409 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	C3orf20	Q8ND61	904 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	AFG1L	Q8WV93	481 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	RSAD2	Q8WXG1	361 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	FATE1	Q969F0	183 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	NMD3	Q96D46	503 aa	Known RBP	4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	EID2B	Q96D98	161 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	LRRC46	Q96FV0	321 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	CCDC34	Q96HJ3	373 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	MARK4	Q96L34	752 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	JAKMIP1	Q96N16	626 aa	Known RBP	4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	ADI1	Q9BV57	179 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	TRIM54	Q9BYV2	358 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	GPR63	Q9BZJ6	419 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	ABCF3	Q9NUQ8	709 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	CCNL1	Q9UK58	526 aa	Predicted RBP	4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	PCDHGB4	Q9UN71	923 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	SOS1	Q07889	1333 aa	Predicted RBP	4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	TTC21B	Q7Z4L5	1316 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	RPTOR	Q8N122	1335 aa		4.68	□□□□□ -1.66
PCM1-223	ENST00000524356	BRD4	O60885	1362 aa	Predicted RBP	4.67	□□□□□ -1.66
PCM1-223	ENST00000524356		A0A087WZ62	844 aa		4.67	□□□□□ -1.66
PCM1-223	ENST00000524356	C17orf113	A0A1B0GUU1	675 aa		4.67	□□□□□ -1.66
PCM1-223	ENST00000524356	TRIM43B	A6NCK2	446 aa		4.67	□□□□□ -1.66
PCM1-223	ENST00000524356	KRTAP9-6	A8MVA2	160 aa		4.67	□□□□□ -1.66
PCM1-223	ENST00000524356	GCOM1	H8Y6P7	765 aa	Predicted RBP	4.67	□□□□□ -1.66
PCM1-223	ENST00000524356	SPTLC2	O15270	562 aa		4.67	□□□□□ -1.66
PCM1-223	ENST00000524356	PGM3	O95394	542 aa		4.67	□□□□□ -1.66
PCM1-223	ENST00000524356	BAG2	O95816	211 aa		4.67	□□□□□ -1.66
PCM1-223	ENST00000524356	IDE	P14735	1019 aa		4.67	□□□□□ -1.66
PCM1-223	ENST00000524356	IL1R1	P14778	569 aa		4.67	□□□□□ -1.66
PCM1-223	ENST00000524356	IL2RB	P14784	551 aa		4.67	□□□□□ -1.66
PCM1-223	ENST00000524356	GSPT1	P15170	499 aa	Known RBP	4.67	□□□□□ -1.66
PCM1-223	ENST00000524356	CHM	P24386	653 aa		4.67	□□□□□ -1.66
PCM1-223	ENST00000524356	GABRB3	P28472	473 aa		4.67	□□□□□ -1.66
PCM1-223	ENST00000524356	MMP13	P45452	471 aa		4.67	□□□□□ -1.66
PCM1-223	ENST00000524356	ARFIP2	P53365	341 aa		4.67	□□□□□ -1.66
PCM1-223	ENST00000524356	TARDBP	Q13148	414 aa	Known RBP eCLIP	4.67	□□□□□ -1.66

Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms