RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 C10orf107Q8IVU9 208 aa10.11□□□□□ -0.79
CLIP1-204ENST00000501271 PIWIL2Q8TC59 973 aaKnown RBP10.11□□□□□ -0.79
CLIP1-204ENST00000501271 NRG4Q8WWG1 115 aa10.11□□□□□ -0.79
CLIP1-204ENST00000501271 FAM161BQ96MY7 647 aa10.11□□□□□ -0.79
CLIP1-204ENST00000501271 TSPAN18Q96SJ8 248 aa10.11□□□□□ -0.79
CLIP1-204ENST00000501271 KCNK16Q96T55 309 aa10.11□□□□□ -0.79
CLIP1-204ENST00000501271 PARK7Q99497 189 aaKnown RBP10.11□□□□□ -0.79
CLIP1-204ENST00000501271 SORT1Q99523 831 aa10.11□□□□□ -0.79
CLIP1-204ENST00000501271 SMOQ99835 787 aa10.11□□□□□ -0.79
CLIP1-204ENST00000501271 NAT9Q9BTE0 207 aa10.11□□□□□ -0.79
CLIP1-204ENST00000501271 BATF3Q9NR55 127 aa10.11□□□□□ -0.79
CLIP1-204ENST00000501271 IGSF5Q9NSI5 407 aa10.11□□□□□ -0.79
CLIP1-204ENST00000501271 ZNF358Q9NW07 568 aa10.11□□□□□ -0.79
CLIP1-204ENST00000501271 NMRK1Q9NWW6 199 aa10.11□□□□□ -0.79
CLIP1-204ENST00000501271 DDX43Q9NXZ2 648 aaKnown RBP10.11□□□□□ -0.79
CLIP1-204ENST00000501271 TMEM216Q9P0N5 145 aa10.11□□□□□ -0.79
CLIP1-204ENST00000501271 TAGLN3Q9UI15 199 aa10.11□□□□□ -0.79
CLIP1-204ENST00000501271 TRPM7Q96QT4 1865 aa10.1□□□□□ -0.79
CLIP1-204ENST00000501271 CAPN9O14815 690 aa10.1□□□□□ -0.79
CLIP1-204ENST00000501271 MYL3P08590 195 aa10.1□□□□□ -0.79
CLIP1-204ENST00000501271 ZNF865P0CJ78 1059 aaPredicted RBP10.1□□□□□ -0.79
CLIP1-204ENST00000501271 ATP6V1C1P21283 382 aa10.1□□□□□ -0.79
CLIP1-204ENST00000501271 GP5P40197 560 aa10.1□□□□□ -0.79
CLIP1-204ENST00000501271 AFF1P51825 1210 aaKnown RBP10.1□□□□□ -0.79
CLIP1-204ENST00000501271 RAP1GDS1P52306 607 aa10.1□□□□□ -0.79
CLIP1-204ENST00000501271 CRYBB1P53674 252 aaPredicted RBP10.1□□□□□ -0.79
CLIP1-204ENST00000501271 DAOAP59103 153 aa10.1□□□□□ -0.79
CLIP1-204ENST00000501271 TPI1P60174 286 aa10.1□□□□□ -0.79
CLIP1-204ENST00000501271 FAM35AQ86V20 835 aa10.1□□□□□ -0.79
CLIP1-204ENST00000501271 ZMIZ2Q8NF64 920 aa10.1□□□□□ -0.79
CLIP1-204ENST00000501271 ATP2A3Q93084 1043 aa10.1□□□□□ -0.79
CLIP1-204ENST00000501271 ZNF669Q96BR6 464 aaPredicted RBP10.1□□□□□ -0.79
CLIP1-204ENST00000501271 ATXN7L3BQ96GX2 97 aa10.1□□□□□ -0.79
CLIP1-204ENST00000501271 CLPTM1LQ96KA5 538 aa10.1□□□□□ -0.79
CLIP1-204ENST00000501271 SNX15Q9NRS6 342 aa10.1□□□□□ -0.79
CLIP1-204ENST00000501271 STOML1Q9UBI4 398 aa10.1□□□□□ -0.79
CLIP1-204ENST00000501271 DCDC2Q9UHG0 476 aa10.1□□□□□ -0.79
CLIP1-204ENST00000501271 TIMM13Q9Y5L4 95 aaPredicted RBP10.1□□□□□ -0.79
CLIP1-204ENST00000501271 MYBPHLA2RUH7 354 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 MEI4A8MW99 385 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 ZBTB24O43167 697 aaPredicted RBP10.09□□□□□ -0.79
CLIP1-204ENST00000501271 MAGEC1O60732 1142 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 TBX10O75333 385 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 CAPN15O75808 1086 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 AP1G2O75843 785 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 AP2A1O95782 977 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 USP17L7P0C7H9 530 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 TYK2P29597 1187 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 CD68P34810 354 aaPredicted RBP10.09□□□□□ -0.79
CLIP1-204ENST00000501271 SCAPQ12770 1279 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 ZBTB17Q13105 803 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 THOC5Q13769 683 aaKnown RBP10.09□□□□□ -0.79
CLIP1-204ENST00000501271 CCDC6Q16204 474 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 SPANXN3Q5MJ09 141 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 RABGAP1LQ5R372 815 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 WDR75Q8IWA0 830 aaKnown RBP10.09□□□□□ -0.79
CLIP1-204ENST00000501271 DCLK2Q8N568 766 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 GSTCDQ8NEC7 633 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 DTX3LQ8TDB6 740 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 DNAJC9Q8WXX5 260 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 AZIN2Q96A70 460 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 NTAN1Q96AB6 310 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 PCED1BQ96HM7 432 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 SENP8Q96LD8 212 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 SLC9A7Q96T83 725 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 CPNE1Q99829 537 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 MLPHQ9BV36 600 aaPredicted RBP10.09□□□□□ -0.79
CLIP1-204ENST00000501271 TXNDC16Q9P2K2 825 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 COPG2Q9UBF2 871 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 VANGL2Q9ULK5 521 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 SNX10Q9Y5X0 201 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 ZCWPW2A0A1B0GU75 182 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 SPECC1L-ADORA2AF8WAN1 911 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 LUC7L3O95232 432 aaKnown RBP10.09□□□□□ -0.79
CLIP1-204ENST00000501271 SERPINE1P05121 402 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 NCAM1P13591 858 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 MAGEA12P43365 314 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 ABCG1P45844 678 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 PPIDQ08752 370 aaKnown RBP10.09□□□□□ -0.79
CLIP1-204ENST00000501271 BLMHQ13867 455 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 CCL14Q16627 93 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 CMPK2Q5EBM0 449 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 SNX30Q5VWJ9 437 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 KCTD11Q693B1 232 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 BHLHA9Q7RTU4 235 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 ARHGAP24Q8N264 748 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 PLD6Q8N2A8 252 aaKnown RBP10.09□□□□□ -0.79
CLIP1-204ENST00000501271 C3orf58Q8NDZ4 430 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 ZNF333Q96JL9 665 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 AGAP2Q99490 1192 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 RBBP8Q99708 897 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 SYT15Q9BQS2 421 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 RHOBTB2Q9BYZ6 727 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 TSPYL2Q9H2G4 693 aaPredicted RBP10.09□□□□□ -0.79
CLIP1-204ENST00000501271 LRRC40Q9H9A6 602 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 SPON1Q9HCB6 807 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 PNPOQ9NVS9 261 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 DDIT4Q9NX09 232 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 CPA4Q9UI42 421 aa10.09□□□□□ -0.79
CLIP1-204ENST00000501271 FBXW11Q9UKB1 542 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms