RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 RSPH9Q9H1X1 276 aaPredicted RBP13.16□□□□□ -0.3
PTPRF-214ENST00000496043 MTG2Q9H4K7 406 aa13.16□□□□□ -0.3
PTPRF-214ENST00000496043 SGK2Q9HBY8 427 aa13.16□□□□□ -0.3
PTPRF-214ENST00000496043 PLCB1Q9NQ66 1216 aa13.16□□□□□ -0.3
PTPRF-214ENST00000496043 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.16□□□□□ -0.3
PTPRF-214ENST00000496043 SLCO3A1Q9UIG8 710 aa13.16□□□□□ -0.3
PTPRF-214ENST00000496043 FHOD1Q9Y613 1164 aa13.16□□□□□ -0.3
PTPRF-214ENST00000496043 PI4KAP42356 2102 aa13.16□□□□□ -0.3
PTPRF-214ENST00000496043 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.15□□□□□ -0.3
PTPRF-214ENST00000496043 EDDM13A0A1B0GTR0 161 aa13.15□□□□□ -0.3
PTPRF-214ENST00000496043 TTC34A8MYJ7 566 aa13.15□□□□□ -0.3
PTPRF-214ENST00000496043 M0QYT0 321 aa13.15□□□□□ -0.3
PTPRF-214ENST00000496043 SIN3BO75182 1162 aa13.15□□□□□ -0.3
PTPRF-214ENST00000496043 DAB1O75553 588 aa13.15□□□□□ -0.3
PTPRF-214ENST00000496043 SEMA4FO95754 770 aa13.15□□□□□ -0.3
PTPRF-214ENST00000496043 F9P00740 461 aa13.15□□□□□ -0.3
PTPRF-214ENST00000496043 UCHL3P15374 230 aa13.15□□□□□ -0.3
PTPRF-214ENST00000496043 CDH5P33151 784 aaPredicted RBP13.15□□□□□ -0.3
PTPRF-214ENST00000496043 RDXP35241 583 aaKnown RBP13.15□□□□□ -0.3
PTPRF-214ENST00000496043 MATKP42679 507 aa13.15□□□□□ -0.3
PTPRF-214ENST00000496043 CTSOP43234 321 aaPredicted RBP13.15□□□□□ -0.3
PTPRF-214ENST00000496043 GABRB2P47870 512 aa13.15□□□□□ -0.3
PTPRF-214ENST00000496043 PLK1P53350 603 aa13.15□□□□□ -0.3
PTPRF-214ENST00000496043 ZNF177Q13360 481 aaPredicted RBP13.15□□□□□ -0.3
PTPRF-214ENST00000496043 AUHQ13825 339 aaKnown RBP13.15□□□□□ -0.3
PTPRF-214ENST00000496043 C9orf64Q5T6V5 341 aa13.15□□□□□ -0.3
PTPRF-214ENST00000496043 FBXL22Q6P050 247 aa13.15□□□□□ -0.3
PTPRF-214ENST00000496043 IL27RAQ6UWB1 636 aa13.15□□□□□ -0.3
PTPRF-214ENST00000496043 USP30Q70CQ3 517 aa13.15□□□□□ -0.3
PTPRF-214ENST00000496043 SND1Q7KZF4 910 aaKnown RBP eCLIP13.15□□□□□ -0.3
PTPRF-214ENST00000496043 DHX40Q8IX18 779 aaKnown RBP13.15□□□□□ -0.3
PTPRF-214ENST00000496043 ZCCHC9Q8N567 271 aaKnown RBP13.15□□□□□ -0.3
PTPRF-214ENST00000496043 OR2I1PQ8NGU4 316 aa13.15□□□□□ -0.3
PTPRF-214ENST00000496043 RPRD1AQ96P16 312 aaPredicted RBP13.15□□□□□ -0.3
PTPRF-214ENST00000496043 GBP4Q96PP9 640 aa13.15□□□□□ -0.3
PTPRF-214ENST00000496043 VPS16Q9H269 839 aa13.15□□□□□ -0.3
PTPRF-214ENST00000496043 C6orf106Q9H6K1 298 aaPredicted RBP13.15□□□□□ -0.3
PTPRF-214ENST00000496043 WDCPQ9H6R7 721 aa13.15□□□□□ -0.3
PTPRF-214ENST00000496043 FBXL12Q9NXK8 326 aa13.15□□□□□ -0.3
PTPRF-214ENST00000496043 TAB2Q9NYJ8 693 aa13.15□□□□□ -0.3
PTPRF-214ENST00000496043 CEP192Q8TEP8 1941 aa13.14□□□□□ -0.31
PTPRF-214ENST00000496043 A0A1B0GVM2 712 aa13.14□□□□□ -0.31
PTPRF-214ENST00000496043 TCAF2A6NFQ2 919 aa13.14□□□□□ -0.31
PTPRF-214ENST00000496043 CD59P13987 128 aa13.14□□□□□ -0.31
PTPRF-214ENST00000496043 PDGFRAP16234 1089 aa13.14□□□□□ -0.31
PTPRF-214ENST00000496043 SCNN1AP37088 669 aa13.14□□□□□ -0.31
PTPRF-214ENST00000496043 FOXC1Q12948 553 aa13.14□□□□□ -0.31
PTPRF-214ENST00000496043 GRIK2Q13002 908 aa13.14□□□□□ -0.31
PTPRF-214ENST00000496043 TAF3Q5VWG9 929 aa13.14□□□□□ -0.31
PTPRF-214ENST00000496043 SASS6Q6UVJ0 657 aa13.14□□□□□ -0.31
PTPRF-214ENST00000496043 LRSAM1Q6UWE0 723 aa13.14□□□□□ -0.31
PTPRF-214ENST00000496043 MSANTD4Q8NCY6 345 aa13.14□□□□□ -0.31
PTPRF-214ENST00000496043 C1orf216Q8TAB5 229 aa13.14□□□□□ -0.31
PTPRF-214ENST00000496043 SNX19Q92543 992 aa13.14□□□□□ -0.31
PTPRF-214ENST00000496043 IGSF8Q969P0 613 aa13.14□□□□□ -0.31
PTPRF-214ENST00000496043 RPL10LQ96L21 214 aaKnown RBP13.14□□□□□ -0.31
PTPRF-214ENST00000496043 FAM129BQ96TA1 746 aa13.14□□□□□ -0.31
PTPRF-214ENST00000496043 NPY6RQ99463 290 aa13.14□□□□□ -0.31
PTPRF-214ENST00000496043 OMDQ99983 421 aa13.14□□□□□ -0.31
PTPRF-214ENST00000496043 SIK2Q9H0K1 926 aa13.14□□□□□ -0.31
PTPRF-214ENST00000496043 PABPC3Q9H361 631 aaKnown RBP13.14□□□□□ -0.31
PTPRF-214ENST00000496043 OSGEPQ9NPF4 335 aa13.14□□□□□ -0.31
PTPRF-214ENST00000496043 STAP1Q9ULZ2 295 aa13.14□□□□□ -0.31
PTPRF-214ENST00000496043 PAXBP1Q9Y5B6 917 aa13.14□□□□□ -0.31
PTPRF-214ENST00000496043 HS3ST4Q9Y661 456 aa13.14□□□□□ -0.31
PTPRF-214ENST00000496043 ITIH6Q6UXX5 1313 aa13.13□□□□□ -0.31
PTPRF-214ENST00000496043 TNRC6BQ9UPQ9 1833 aaKnown RBP13.13□□□□□ -0.31
PTPRF-214ENST00000496043 GOLGA6L22H0YM25 854 aa13.13□□□□□ -0.31
PTPRF-214ENST00000496043 PAGE1O75459 146 aa13.13□□□□□ -0.31
PTPRF-214ENST00000496043 CLDN11O75508 207 aa13.13□□□□□ -0.31
PTPRF-214ENST00000496043 GJB3O75712 270 aa13.13□□□□□ -0.31
PTPRF-214ENST00000496043 FSBPO95073 299 aa13.13□□□□□ -0.31
PTPRF-214ENST00000496043 LSM8O95777 96 aaKnown RBP13.13□□□□□ -0.31
PTPRF-214ENST00000496043 MZF1P28698 734 aaPredicted RBP13.13□□□□□ -0.31
PTPRF-214ENST00000496043 SLC8A1P32418 973 aa13.13□□□□□ -0.31
PTPRF-214ENST00000496043 CSNK1EP49674 416 aaKnown RBP13.13□□□□□ -0.31
PTPRF-214ENST00000496043 CXCR3P49682 368 aa13.13□□□□□ -0.31
PTPRF-214ENST00000496043 AFF3P51826 1226 aaKnown RBP13.13□□□□□ -0.31
PTPRF-214ENST00000496043 SIM1P81133 766 aaPredicted RBP13.13□□□□□ -0.31
PTPRF-214ENST00000496043 DEUP1Q05D60 604 aa13.13□□□□□ -0.31
PTPRF-214ENST00000496043 TEAD4Q15561 434 aa13.13□□□□□ -0.31
PTPRF-214ENST00000496043 CST6Q15828 149 aa13.13□□□□□ -0.31
PTPRF-214ENST00000496043 BRMS1LQ5PSV4 323 aa13.13□□□□□ -0.31
PTPRF-214ENST00000496043 FKBP15Q5T1M5 1219 aa13.13□□□□□ -0.31
PTPRF-214ENST00000496043 ACBD5Q5T8D3 534 aaPredicted RBP13.13□□□□□ -0.31
PTPRF-214ENST00000496043 FAM102AQ5T9C2 384 aaPredicted RBP13.13□□□□□ -0.31
PTPRF-214ENST00000496043 CIR1Q86X95 450 aaPredicted RBP13.13□□□□□ -0.31
PTPRF-214ENST00000496043 ZNF677Q86XU0 584 aa13.13□□□□□ -0.31
PTPRF-214ENST00000496043 MMAAQ8IVH4 418 aaKnown RBP13.13□□□□□ -0.31
PTPRF-214ENST00000496043 PTPRN2Q92932 1015 aa13.13□□□□□ -0.31
PTPRF-214ENST00000496043 NT5C3BQ969T7 300 aa13.13□□□□□ -0.31
PTPRF-214ENST00000496043 BIRC7Q96CA5 298 aa13.13□□□□□ -0.31
PTPRF-214ENST00000496043 PGAP3Q96FM1 320 aaPredicted RBP13.13□□□□□ -0.31
PTPRF-214ENST00000496043 TKTL2Q9H0I9 626 aa13.13□□□□□ -0.31
PTPRF-214ENST00000496043 NEUROG2Q9H2A3 272 aa13.13□□□□□ -0.31
PTPRF-214ENST00000496043 GAREM1Q9H706 876 aa13.13□□□□□ -0.31
PTPRF-214ENST00000496043 VANGL2Q9ULK5 521 aa13.13□□□□□ -0.31
PTPRF-214ENST00000496043 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.13□□□□□ -0.31
PTPRF-214ENST00000496043 PCDHB9Q9Y5E1 797 aa13.13□□□□□ -0.31
PTPRF-214ENST00000496043 ASCC3Q8N3C0 2202 aaKnown RBP13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms