RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 RFX8Q6ZV50 586 aa17.71■□□□□ 0.43
LIME1-208ENST00000493265 MAP7D3Q8IWC1 876 aa17.71■□□□□ 0.43
LIME1-208ENST00000493265 ZNF683Q8IZ20 524 aa17.71■□□□□ 0.43
LIME1-208ENST00000493265 KIAA1958Q8N8K9 716 aa17.71■□□□□ 0.43
LIME1-208ENST00000493265 TLR10Q9BXR5 811 aa17.71■□□□□ 0.43
LIME1-208ENST00000493265 ZYG11BQ9C0D3 744 aa17.71■□□□□ 0.43
LIME1-208ENST00000493265 JRKLQ9Y4A0 524 aa17.71■□□□□ 0.43
LIME1-208ENST00000493265 KIF26AQ9ULI4 1882 aaPredicted RBP17.71■□□□□ 0.43
LIME1-208ENST00000493265 SPTBN4Q9H254 2564 aa17.71■□□□□ 0.43
LIME1-208ENST00000493265 PRR23AA6NEV1 266 aa17.7■□□□□ 0.42
LIME1-208ENST00000493265 KCNK3O14649 394 aa17.7■□□□□ 0.42
LIME1-208ENST00000493265 ATP1A1P05023 1023 aaKnown RBP17.7■□□□□ 0.42
LIME1-208ENST00000493265 AMPD1P23109 780 aa17.7■□□□□ 0.42
LIME1-208ENST00000493265 SOX9P48436 509 aa17.7■□□□□ 0.42
LIME1-208ENST00000493265 NUMBP49757 651 aa17.7■□□□□ 0.42
LIME1-208ENST00000493265 ARSEP51690 589 aa17.7■□□□□ 0.42
LIME1-208ENST00000493265 NRG1Q02297 640 aaPredicted RBP17.7■□□□□ 0.42
LIME1-208ENST00000493265 GAD2Q05329 585 aa17.7■□□□□ 0.42
LIME1-208ENST00000493265 MANEALQ5VSG8 457 aa17.7■□□□□ 0.42
LIME1-208ENST00000493265 FYB2Q5VWT5 728 aa17.7■□□□□ 0.42
LIME1-208ENST00000493265 KAZNQ674X7 775 aa17.7■□□□□ 0.42
LIME1-208ENST00000493265 CWF19L1Q69YN2 538 aaKnown RBP17.7■□□□□ 0.42
LIME1-208ENST00000493265 SPOCD1Q6ZMY3 1216 aa17.7■□□□□ 0.42
LIME1-208ENST00000493265 RFX6Q8HWS3 928 aa17.7■□□□□ 0.42
LIME1-208ENST00000493265 CCDC117Q8IWD4 279 aaPredicted RBP17.7■□□□□ 0.42
LIME1-208ENST00000493265 RCOR2Q8IZ40 523 aa17.7■□□□□ 0.42
LIME1-208ENST00000493265 RBM41Q96IZ5 413 aaKnown RBP17.7■□□□□ 0.42
LIME1-208ENST00000493265 CSPG4P5Q96PW8 444 aa17.7■□□□□ 0.42
LIME1-208ENST00000493265 DNAI1Q9UI46 699 aa17.7■□□□□ 0.42
LIME1-208ENST00000493265 PTPRZ1P23471 2315 aaPredicted RBP17.7■□□□□ 0.42
LIME1-208ENST00000493265 TICRRQ7Z2Z1 1910 aa17.69■□□□□ 0.42
LIME1-208ENST00000493265 C3orf70A6NLC5 250 aaPredicted RBP17.69■□□□□ 0.42
LIME1-208ENST00000493265 DRGXA6NNA5 263 aa17.69■□□□□ 0.42
LIME1-208ENST00000493265 H0Y626 953 aa17.69■□□□□ 0.42
LIME1-208ENST00000493265 ARNTLO00327 626 aa17.69■□□□□ 0.42
LIME1-208ENST00000493265 GFRA2O00451 464 aa17.69■□□□□ 0.42
LIME1-208ENST00000493265 PYGMP11217 842 aa17.69■□□□□ 0.42
LIME1-208ENST00000493265 KRT10P13645 584 aa17.69■□□□□ 0.42
LIME1-208ENST00000493265 HOXD9P28356 352 aaPredicted RBP17.69■□□□□ 0.42
LIME1-208ENST00000493265 CXCR5P32302 372 aa17.69■□□□□ 0.42
LIME1-208ENST00000493265 NBL1P41271 181 aa17.69■□□□□ 0.42
LIME1-208ENST00000493265 DYNLT1P63172 113 aa17.69■□□□□ 0.42
LIME1-208ENST00000493265 ANKRD20A8PQ5CZ79 823 aa17.69■□□□□ 0.42
LIME1-208ENST00000493265 ARTNQ5T4W7 220 aa17.69■□□□□ 0.42
LIME1-208ENST00000493265 SYT10Q6XYQ8 523 aa17.69■□□□□ 0.42
LIME1-208ENST00000493265 ANKS1BQ7Z6G8 1248 aa17.69■□□□□ 0.42
LIME1-208ENST00000493265 EXD1Q8NHP7 514 aa17.69■□□□□ 0.42
LIME1-208ENST00000493265 HEMGNQ9BXL5 484 aa17.69■□□□□ 0.42
LIME1-208ENST00000493265 MAK16Q9BXY0 300 aaKnown RBP17.69■□□□□ 0.42
LIME1-208ENST00000493265 CATSPERBQ9H7T0 1116 aa17.69■□□□□ 0.42
LIME1-208ENST00000493265 HEBP1Q9NRV9 189 aa17.69■□□□□ 0.42
LIME1-208ENST00000493265 PPARGC1AQ9UBK2 798 aaKnown RBP17.69■□□□□ 0.42
LIME1-208ENST00000493265 CLEC4EQ9ULY5 219 aa17.69■□□□□ 0.42
LIME1-208ENST00000493265 IGLV3-10A0A075B6K4 115 aa17.68■□□□□ 0.42
LIME1-208ENST00000493265 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.68■□□□□ 0.42
LIME1-208ENST00000493265 PENKP01210 267 aaPredicted RBP17.68■□□□□ 0.42
LIME1-208ENST00000493265 SRFP11831 508 aa17.68■□□□□ 0.42
LIME1-208ENST00000493265 RHOQP17081 205 aa17.68■□□□□ 0.42
LIME1-208ENST00000493265 ERCC2P18074 760 aa17.68■□□□□ 0.42
LIME1-208ENST00000493265 IL4RP24394 825 aa17.68■□□□□ 0.42
LIME1-208ENST00000493265 SLC6A11P48066 632 aa17.68■□□□□ 0.42
LIME1-208ENST00000493265 CLCN5P51795 746 aa17.68■□□□□ 0.42
LIME1-208ENST00000493265 CDH4P55283 916 aa17.68■□□□□ 0.42
LIME1-208ENST00000493265 ZNF177Q13360 481 aaPredicted RBP17.68■□□□□ 0.42
LIME1-208ENST00000493265 CDH18Q13634 790 aa17.68■□□□□ 0.42
LIME1-208ENST00000493265 RIF1Q5UIP0 2472 aaKnown RBP17.68■□□□□ 0.42
LIME1-208ENST00000493265 TTC39BQ5VTQ0 682 aaPredicted RBP17.68■□□□□ 0.42
LIME1-208ENST00000493265 DCAF12L1Q5VU92 463 aa17.68■□□□□ 0.42
LIME1-208ENST00000493265 NAIF1Q69YI7 327 aaPredicted RBP17.68■□□□□ 0.42
LIME1-208ENST00000493265 MFN1Q8IWA4 741 aa17.68■□□□□ 0.42
LIME1-208ENST00000493265 NETO2Q8NC67 525 aa17.68■□□□□ 0.42
LIME1-208ENST00000493265 FAM71BQ8TC56 605 aa17.68■□□□□ 0.42
LIME1-208ENST00000493265 TRAF3IP1Q8TDR0 691 aaPredicted RBP17.68■□□□□ 0.42
LIME1-208ENST00000493265 TSC1Q92574 1164 aa17.68■□□□□ 0.42
LIME1-208ENST00000493265 NAPGQ99747 312 aaPredicted RBP17.68■□□□□ 0.42
LIME1-208ENST00000493265 ZNF670Q9BS34 389 aa17.68■□□□□ 0.42
LIME1-208ENST00000493265 ARHGEF4Q9NR80 690 aa17.68■□□□□ 0.42
LIME1-208ENST00000493265 ETNK2Q9NVF9 386 aa17.68■□□□□ 0.42
LIME1-208ENST00000493265 DNAJC17Q9NVM6 304 aaKnown RBP17.68■□□□□ 0.42
LIME1-208ENST00000493265 FBXL21Q9UKT6 434 aa17.68■□□□□ 0.42
LIME1-208ENST00000493265 NEU3Q9UQ49 428 aa17.68■□□□□ 0.42
LIME1-208ENST00000493265 MFHAS1Q9Y4C4 1052 aa17.68■□□□□ 0.42
LIME1-208ENST00000493265 FAM186AA6NE01 2351 aa17.68■□□□□ 0.42
LIME1-208ENST00000493265 VPS13AQ96RL7 3174 aa17.68■□□□□ 0.42
LIME1-208ENST00000493265 A0A1B0GVM2 712 aa17.67■□□□□ 0.42
LIME1-208ENST00000493265 CTAGE9A4FU28 777 aa17.67■□□□□ 0.42
LIME1-208ENST00000493265 TCAF2A6NFQ2 919 aa17.67■□□□□ 0.42
LIME1-208ENST00000493265 FGF10O15520 208 aaPredicted RBP17.67■□□□□ 0.42
LIME1-208ENST00000493265 HOXC11O43248 304 aaPredicted RBP17.67■□□□□ 0.42
LIME1-208ENST00000493265 PI15O43692 258 aa17.67■□□□□ 0.42
LIME1-208ENST00000493265 CLDN11O75508 207 aa17.67■□□□□ 0.42
LIME1-208ENST00000493265 LUC7L3O95232 432 aaKnown RBP17.67■□□□□ 0.42
LIME1-208ENST00000493265 OR1E1P30953 314 aa17.67■□□□□ 0.42
LIME1-208ENST00000493265 CASQ1P31415 396 aa17.67■□□□□ 0.42
LIME1-208ENST00000493265 GJA4P35212 333 aa17.67■□□□□ 0.42
LIME1-208ENST00000493265 CETN2P41208 172 aa17.67■□□□□ 0.42
LIME1-208ENST00000493265 CDKN2BP42772 138 aa17.67■□□□□ 0.42
LIME1-208ENST00000493265 HCAR3P49019 387 aa17.67■□□□□ 0.42
LIME1-208ENST00000493265 ZNF135P52742 658 aaPredicted RBP17.67■□□□□ 0.42
LIME1-208ENST00000493265 ETF1P62495 437 aaKnown RBP17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms