RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 RNF145Q96MT1 663 aa13.8□□□□□ -0.2
USP42-206ENST00000479544 C2orf40Q9H1Z8 148 aa13.8□□□□□ -0.2
USP42-206ENST00000479544 UTP6Q9NYH9 597 aaKnown RBP13.8□□□□□ -0.2
USP42-206ENST00000479544 FAM8A1Q9UBU6 413 aa13.8□□□□□ -0.2
USP42-206ENST00000479544 SPDYE2BA6NHP3 402 aa13.8□□□□□ -0.2
USP42-206ENST00000479544 SPDYE6P0CI01 402 aa13.8□□□□□ -0.2
USP42-206ENST00000479544 HSPA1AP0DMV8 641 aaKnown RBP13.8□□□□□ -0.2
USP42-206ENST00000479544 HSPA1BP0DMV9 641 aaKnown RBP13.8□□□□□ -0.2
USP42-206ENST00000479544 PCNAP12004 261 aa13.8□□□□□ -0.2
USP42-206ENST00000479544 GNAZP19086 355 aa13.8□□□□□ -0.2
USP42-206ENST00000479544 RBBP7Q16576 425 aa13.8□□□□□ -0.2
USP42-206ENST00000479544 DNAJC14Q6Y2X3 702 aaPredicted RBP13.8□□□□□ -0.2
USP42-206ENST00000479544 RNF139Q8WU17 664 aa13.8□□□□□ -0.2
USP42-206ENST00000479544 C7orf43Q8WVR3 580 aa13.8□□□□□ -0.2
USP42-206ENST00000479544 MOCOSQ96EN8 888 aa13.8□□□□□ -0.2
USP42-206ENST00000479544 RNF157Q96PX1 679 aa13.8□□□□□ -0.2
USP42-206ENST00000479544 DDIT4Q9NX09 232 aa13.8□□□□□ -0.2
USP42-206ENST00000479544 SCHIP1Q9P0W5 487 aaPredicted RBP13.8□□□□□ -0.2
USP42-206ENST00000479544 CROTQ9UKG9 612 aa13.8□□□□□ -0.2
USP42-206ENST00000479544 RGSL1A5PLK6 1076 aa13.8□□□□□ -0.2
USP42-206ENST00000479544 SIGLEC16A6NMB1 481 aa13.8□□□□□ -0.2
USP42-206ENST00000479544 TFPTP0C1Z6 253 aa13.8□□□□□ -0.2
USP42-206ENST00000479544 CKMT2P17540 419 aa13.8□□□□□ -0.2
USP42-206ENST00000479544 FASP25445 335 aa13.8□□□□□ -0.2
USP42-206ENST00000479544 GRIA4P48058 902 aa13.8□□□□□ -0.2
USP42-206ENST00000479544 SLC5A3P53794 718 aa13.8□□□□□ -0.2
USP42-206ENST00000479544 PSME3P61289 254 aa13.8□□□□□ -0.2
USP42-206ENST00000479544 NR1D2Q14995 579 aa13.8□□□□□ -0.2
USP42-206ENST00000479544 CDHR3Q6ZTQ4 885 aa13.8□□□□□ -0.2
USP42-206ENST00000479544 ZCCHC7Q8N3Z6 543 aaKnown RBP13.8□□□□□ -0.2
USP42-206ENST00000479544 PPP1R13LQ8WUF5 828 aa13.8□□□□□ -0.2
USP42-206ENST00000479544 NRG4Q8WWG1 115 aa13.8□□□□□ -0.2
USP42-206ENST00000479544 MAML3Q96JK9 1138 aa13.8□□□□□ -0.2
USP42-206ENST00000479544 THUMPD3Q9BV44 507 aaKnown RBP13.8□□□□□ -0.2
USP42-206ENST00000479544 LNPEPQ9UIQ6 1025 aa13.8□□□□□ -0.2
USP42-206ENST00000479544 DSEQ9UL01 958 aa13.8□□□□□ -0.2
USP42-206ENST00000479544 CLUHO75153 1309 aa13.8□□□□□ -0.2
USP42-206ENST00000479544 A0A087WXM4 84 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 TRPC5OSA6NMA1 111 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 SPTLC1O15269 473 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 PAPSS1O43252 624 aaPredicted RBP13.79□□□□□ -0.2
USP42-206ENST00000479544 NCAM1P13591 858 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 CAP2P40123 477 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 YWHAZP63104 245 aaKnown RBP13.79□□□□□ -0.2
USP42-206ENST00000479544 PRKAA1Q13131 559 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 PDK2Q15119 407 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 TRIM60Q495X7 471 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 ANKRD23Q86SG2 305 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 DSELQ8IZU8 1212 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 PHTF2Q8N3S3 785 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 SPON2Q9BUD6 331 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 SNRNP25Q9BV90 132 aaKnown RBP13.79□□□□□ -0.2
USP42-206ENST00000479544 TEX13BQ9BXU2 312 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 B3GNT5Q9BYG0 378 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 RUBCNLQ9H714 662 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 APOBEC3GQ9HC16 384 aaKnown RBP13.79□□□□□ -0.2
USP42-206ENST00000479544 EXOSC4Q9NPD3 245 aaKnown RBP13.79□□□□□ -0.2
USP42-206ENST00000479544 HOXC10Q9NYD6 342 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 TMEM216Q9P0N5 145 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 IGLV3-22A0A075B6J6 115 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 MUTP22033 750 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 INPP1P49441 399 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 RPL14P50914 215 aaKnown RBP13.79□□□□□ -0.2
USP42-206ENST00000479544 NFYCQ13952 458 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 UGP2Q16851 508 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 NUP188Q5SRE5 1749 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 ZFP1Q6P2D0 407 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 FASTKD5Q7L8L6 764 aaKnown RBP13.79□□□□□ -0.2
USP42-206ENST00000479544 ZNF554Q86TJ5 538 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 IGDCC3Q8IVU1 814 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 OFCC1Q8IZS5 231 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 ZNF781Q8N8C0 355 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 BEST2Q8NFU1 509 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 KCTD4Q8WVF5 259 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 NKD2Q969F2 451 aaPredicted RBP13.79□□□□□ -0.2
USP42-206ENST00000479544 EMID1Q96A84 441 aaPredicted RBP13.79□□□□□ -0.2
USP42-206ENST00000479544 PXMP2Q9NR77 195 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 ERI2A8K979 691 aaKnown RBP13.79□□□□□ -0.2
USP42-206ENST00000479544 TRDMT1O14717 391 aaKnown RBP13.79□□□□□ -0.2
USP42-206ENST00000479544 TIMM44O43615 452 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 DDHD2O94830 711 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 SORBS2O94875 1100 aaKnown RBP13.79□□□□□ -0.2
USP42-206ENST00000479544 TXNP10599 105 aaKnown RBP13.79□□□□□ -0.2
USP42-206ENST00000479544 UNGP13051 313 aaPredicted RBP13.79□□□□□ -0.2
USP42-206ENST00000479544 EIF4BP23588 611 aaKnown RBP13.79□□□□□ -0.2
USP42-206ENST00000479544 LRPAP1P30533 357 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 NAMPTP43490 491 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 SPIDRQ14159 915 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 ZNF618Q5T7W0 954 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 TWF2Q6IBS0 349 aaKnown RBP13.79□□□□□ -0.2
USP42-206ENST00000479544 GK5Q6ZS86 529 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 KCNMB4Q86W47 210 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 DRAXINQ8NBI3 349 aaPredicted RBP13.79□□□□□ -0.2
USP42-206ENST00000479544 ZNF555Q8NEP9 628 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 LPAR1Q92633 364 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 ACE2Q9BYF1 805 aaPredicted RBP13.79□□□□□ -0.2
USP42-206ENST00000479544 PCDHAC1Q9H158 963 aa13.79□□□□□ -0.2
USP42-206ENST00000479544 HADHBP55084 474 aaKnown RBP13.78□□□□□ -0.2
USP42-206ENST00000479544 PRKD1Q15139 912 aaPredicted RBP13.78□□□□□ -0.2
USP42-206ENST00000479544 PPM1LQ5SGD2 360 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms