RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 USP24Q9UPU5 2620 aa14.41□□□□□ -0.1
USP4-206ENST00000461553 ITIH6Q6UXX5 1313 aa14.41□□□□□ -0.1
USP4-206ENST00000461553 EDDM13A0A1B0GTR0 161 aa14.4□□□□□ -0.1
USP4-206ENST00000461553 UPK3BL1B0FP48 263 aa14.4□□□□□ -0.1
USP4-206ENST00000461553 UPK3BL2E5RIL1 263 aa14.4□□□□□ -0.1
USP4-206ENST00000461553 GOLGA6L22H0YM25 854 aa14.4□□□□□ -0.1
USP4-206ENST00000461553 M0QYT0 321 aa14.4□□□□□ -0.1
USP4-206ENST00000461553 BCAT2O15382 392 aaPredicted RBP14.4□□□□□ -0.1
USP4-206ENST00000461553 SIN3BO75182 1162 aa14.4□□□□□ -0.1
USP4-206ENST00000461553 SEMA4FO95754 770 aa14.4□□□□□ -0.1
USP4-206ENST00000461553 C7P10643 843 aa14.4□□□□□ -0.1
USP4-206ENST00000461553 UCHL3P15374 230 aa14.4□□□□□ -0.1
USP4-206ENST00000461553 CYP11B1P15538 503 aa14.4□□□□□ -0.1
USP4-206ENST00000461553 PDGFRAP16234 1089 aa14.4□□□□□ -0.1
USP4-206ENST00000461553 CDH5P33151 784 aaPredicted RBP14.4□□□□□ -0.1
USP4-206ENST00000461553 NOS2P35228 1153 aa14.4□□□□□ -0.1
USP4-206ENST00000461553 OXCT1P55809 520 aa14.4□□□□□ -0.1
USP4-206ENST00000461553 ECT2LQ008S8 904 aa14.4□□□□□ -0.1
USP4-206ENST00000461553 SFSWAPQ12872 951 aaKnown RBP14.4□□□□□ -0.1
USP4-206ENST00000461553 FOXC1Q12948 553 aa14.4□□□□□ -0.1
USP4-206ENST00000461553 SEMA3BQ13214 749 aa14.4□□□□□ -0.1
USP4-206ENST00000461553 EIF4EBP2Q13542 120 aaPredicted RBP14.4□□□□□ -0.1
USP4-206ENST00000461553 SLC12A1Q13621 1099 aa14.4□□□□□ -0.1
USP4-206ENST00000461553 KLHDC7AQ5VTJ3 777 aa14.4□□□□□ -0.1
USP4-206ENST00000461553 TAF3Q5VWG9 929 aa14.4□□□□□ -0.1
USP4-206ENST00000461553 DHX40Q8IX18 779 aaKnown RBP14.4□□□□□ -0.1
USP4-206ENST00000461553 CCAR2Q8N163 923 aaKnown RBP14.4□□□□□ -0.1
USP4-206ENST00000461553 ZNF397Q8NF99 534 aaPredicted RBP14.4□□□□□ -0.1
USP4-206ENST00000461553 OR2I1PQ8NGU4 316 aa14.4□□□□□ -0.1
USP4-206ENST00000461553 GANCQ8TET4 914 aa14.4□□□□□ -0.1
USP4-206ENST00000461553 MRGPRX3Q96LB0 322 aa14.4□□□□□ -0.1
USP4-206ENST00000461553 PRMT1Q99873 361 aaKnown RBP14.4□□□□□ -0.1
USP4-206ENST00000461553 RSPH9Q9H1X1 276 aaPredicted RBP14.4□□□□□ -0.1
USP4-206ENST00000461553 SGK2Q9HBY8 427 aa14.4□□□□□ -0.1
USP4-206ENST00000461553 DNAAF2Q9NVR5 837 aaKnown RBP14.4□□□□□ -0.1
USP4-206ENST00000461553 EIF2B4Q9UI10 523 aaKnown RBP14.4□□□□□ -0.1
USP4-206ENST00000461553 NCKAP1Q9Y2A7 1128 aa14.4□□□□□ -0.1
USP4-206ENST00000461553 KMT2BQ9UMN6 2715 aaPredicted RBP14.39□□□□□ -0.11
USP4-206ENST00000461553 F8VZ95 297 aa14.39□□□□□ -0.11
USP4-206ENST00000461553 LSM8O95777 96 aaKnown RBP14.39□□□□□ -0.11
USP4-206ENST00000461553 CER1O95813 267 aa14.39□□□□□ -0.11
USP4-206ENST00000461553 ACSL1P33121 698 aa14.39□□□□□ -0.11
USP4-206ENST00000461553 NNMTP40261 264 aa14.39□□□□□ -0.11
USP4-206ENST00000461553 MATKP42679 507 aa14.39□□□□□ -0.11
USP4-206ENST00000461553 CTSOP43234 321 aaPredicted RBP14.39□□□□□ -0.11
USP4-206ENST00000461553 SULT1E1P49888 294 aa14.39□□□□□ -0.11
USP4-206ENST00000461553 CENPCQ03188 943 aa14.39□□□□□ -0.11
USP4-206ENST00000461553 SULT2A1Q06520 285 aa14.39□□□□□ -0.11
USP4-206ENST00000461553 KCNMA1Q12791 1236 aa14.39□□□□□ -0.11
USP4-206ENST00000461553 FKBP15Q5T1M5 1219 aa14.39□□□□□ -0.11
USP4-206ENST00000461553 FAM102AQ5T9C2 384 aaPredicted RBP14.39□□□□□ -0.11
USP4-206ENST00000461553 LRSAM1Q6UWE0 723 aa14.39□□□□□ -0.11
USP4-206ENST00000461553 USP30Q70CQ3 517 aa14.39□□□□□ -0.11
USP4-206ENST00000461553 SND1Q7KZF4 910 aaKnown RBP eCLIP14.39□□□□□ -0.11
USP4-206ENST00000461553 ENOX1Q8TC92 643 aaKnown RBP14.39□□□□□ -0.11
USP4-206ENST00000461553 PABPC3Q9H361 631 aaKnown RBP14.39□□□□□ -0.11
USP4-206ENST00000461553 MTG2Q9H4K7 406 aa14.39□□□□□ -0.11
USP4-206ENST00000461553 C6orf106Q9H6K1 298 aaPredicted RBP14.39□□□□□ -0.11
USP4-206ENST00000461553 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.39□□□□□ -0.11
USP4-206ENST00000461553 VANGL2Q9ULK5 521 aa14.39□□□□□ -0.11
USP4-206ENST00000461553 ZBTB32Q9Y2Y4 487 aaPredicted RBP14.39□□□□□ -0.11
USP4-206ENST00000461553 PAXBP1Q9Y5B6 917 aa14.39□□□□□ -0.11
USP4-206ENST00000461553 FRYQ5TBA9 3013 aa14.39□□□□□ -0.11
USP4-206ENST00000461553 IGF2RP11717 2491 aa14.38□□□□□ -0.11
USP4-206ENST00000461553 TARSL2A2RTX5 802 aaKnown RBP14.38□□□□□ -0.11
USP4-206ENST00000461553 SCNN1AP37088 669 aa14.38□□□□□ -0.11
USP4-206ENST00000461553 GGCXP38435 758 aa14.38□□□□□ -0.11
USP4-206ENST00000461553 RNASE9P60153 205 aaKnown RBP14.38□□□□□ -0.11
USP4-206ENST00000461553 AUHQ13825 339 aaKnown RBP14.38□□□□□ -0.11
USP4-206ENST00000461553 ARID5BQ14865 1188 aa14.38□□□□□ -0.11
USP4-206ENST00000461553 CST6Q15828 149 aa14.38□□□□□ -0.11
USP4-206ENST00000461553 BRMS1LQ5PSV4 323 aa14.38□□□□□ -0.11
USP4-206ENST00000461553 DPY19L2P1Q6NXN4 242 aa14.38□□□□□ -0.11
USP4-206ENST00000461553 FBXL22Q6P050 247 aa14.38□□□□□ -0.11
USP4-206ENST00000461553 IL27RAQ6UWB1 636 aa14.38□□□□□ -0.11
USP4-206ENST00000461553 PIP4P1Q86T03 277 aa14.38□□□□□ -0.11
USP4-206ENST00000461553 ERICH1Q86X53 443 aa14.38□□□□□ -0.11
USP4-206ENST00000461553 APCDD1Q8J025 514 aa14.38□□□□□ -0.11
USP4-206ENST00000461553 EPS8L1Q8TE68 723 aa14.38□□□□□ -0.11
USP4-206ENST00000461553 C18orf8Q96DM3 657 aa14.38□□□□□ -0.11
USP4-206ENST00000461553 PPP1R9BQ96SB3 815 aa14.38□□□□□ -0.11
USP4-206ENST00000461553 NAA15Q9BXJ9 866 aaKnown RBP14.38□□□□□ -0.11
USP4-206ENST00000461553 STK33Q9BYT3 514 aa14.38□□□□□ -0.11
USP4-206ENST00000461553 SLC25A13Q9UJS0 675 aa14.38□□□□□ -0.11
USP4-206ENST00000461553 HS3ST4Q9Y661 456 aa14.38□□□□□ -0.11
USP4-206ENST00000461553 TTC34A8MYJ7 566 aa14.37□□□□□ -0.11
USP4-206ENST00000461553 MID1O15344 667 aa14.37□□□□□ -0.11
USP4-206ENST00000461553 PAGE1O75459 146 aa14.37□□□□□ -0.11
USP4-206ENST00000461553 FSBPO95073 299 aa14.37□□□□□ -0.11
USP4-206ENST00000461553 ADH1BP00325 375 aa14.37□□□□□ -0.11
USP4-206ENST00000461553 PSMD8P48556 350 aa14.37□□□□□ -0.11
USP4-206ENST00000461553 NUMBP49757 651 aa14.37□□□□□ -0.11
USP4-206ENST00000461553 STK19P49842 368 aaPredicted RBP14.37□□□□□ -0.11
USP4-206ENST00000461553 AFF3P51826 1226 aaKnown RBP14.37□□□□□ -0.11
USP4-206ENST00000461553 SIM1P81133 766 aaPredicted RBP14.37□□□□□ -0.11
USP4-206ENST00000461553 SLC14A1Q13336 389 aa14.37□□□□□ -0.11
USP4-206ENST00000461553 HNRNPDQ14103 355 aaKnown RBP14.37□□□□□ -0.11
USP4-206ENST00000461553 ELAVL3Q14576 367 aaKnown RBP14.37□□□□□ -0.11
USP4-206ENST00000461553 KRT31Q15323 416 aa14.37□□□□□ -0.11
USP4-206ENST00000461553 TEAD4Q15561 434 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms