RNA–Protein interactions for RNA: ENST00000411220.1

RNU4-88P-201, Transcript of RNA, U4 small nuclear 88, pseudogene, humanhuman

BASIC

Gene RNU4-88P, Length 86 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-88P-201ENST00000411220 RELNP78509 3460 aa-1.34□□□□□ -2.62
RNU4-88P-201ENST00000411220 ARFGEF3Q5TH69 2177 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 CNTRLQ7Z7A1 2325 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 SHROOM3Q8TF72 1996 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 ACACBO00763 2458 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 PNMA6FA0A0J9YX94 578 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 A0A1B0GVT2 93 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 TMEM269A0A1B0GVZ9 245 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 SH2D7A6NKC9 451 aaPredicted RBP-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 BTBD19C9JJ37 291 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 SRPX2O60687 465 aaPredicted RBP-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 ATG13O75143 517 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 LRCH4O75427 683 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 FSTL3O95633 263 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 ATP1A1P05023 1023 aaKnown RBP-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 ZNF14P17017 642 aaPredicted RBP-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 CAPN2P17655 700 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 MAGEB1P43366 347 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 ZNF83P51522 516 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 RAP2BP61225 183 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 PITX1P78337 314 aaPredicted RBP-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 DYRK1AQ13627 763 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 ZNF267Q14586 743 aaPredicted RBP-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 KCTD19Q17RG1 926 aaPredicted RBP-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 PRR30Q53SZ7 412 aaPredicted RBP-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 FAM120AOSQ5T036 256 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 ZNF544Q6NX49 715 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 PAMR1Q6UXH9 720 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 LRIG3Q6UXM1 1119 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 ZBED8Q8IZ13 594 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 ADGRG5Q8IZF4 528 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 LINC01561Q8N1V8 128 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 ZNF502Q8TBZ5 544 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 AUTS2Q8WXX7 1259 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 MSI2Q96DH6 328 aaKnown RBP-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 CEP95Q96GE4 821 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 TUBGCP5Q96RT8 1024 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 CD180Q99467 661 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 PRRT1Q99946 306 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 RETNLBQ9BQ08 111 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 HTATIP2Q9BUP3 242 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 UBQLN4Q9NRR5 601 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 APEX2Q9UBZ4 518 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 NDOR1Q9UHB4 597 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 RIMKLBQ9ULI2 386 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 NPFFR2Q9Y5X5 522 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 GREB1LQ9C091 1923 aaPredicted RBP-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 SPENQ96T58 3664 aaKnown RBP-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 DISP3Q9P2K9 1392 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 KALRNO60229 2985 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 SLIT3O75094 1523 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 ACACAQ13085 2346 aa-1.35□□□□□ -2.63
RNU4-88P-201ENST00000411220 BOD1L1Q8NFC6 3051 aa-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 SMG1Q96Q15 3661 aaKnown RBP-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 FLT1P17948 1338 aa-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 PNPLA7Q6ZV29 1317 aa-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 A0A0G2JK05 382 aa-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 GSAPA4D1B5 854 aa-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 PMS2P5A8MQ11 134 aa-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 PHF1O43189 567 aaPredicted RBP-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 GCATO75600 419 aa-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 CPP00450 1065 aa-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 SCG5P05408 212 aa-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 RBMY1A1P0DJD3 496 aaKnown RBP-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 RBMY1CP0DJD4 496 aa-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 KCNA2P16389 499 aa-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 ITIH1P19827 911 aa-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 GLRA1P23415 457 aa-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 RNASE4P34096 147 aaKnown RBP-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 CYP2J2P51589 502 aa-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 ALDH5A1P51649 535 aaPredicted RBP-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 GSCP56915 257 aaPredicted RBP-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 DEFB103AP81534 67 aa-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 ACVR1Q04771 509 aa-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 NEDD9Q14511 834 aa-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 PDCD1Q15116 288 aa-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 SEC23BQ15437 767 aa-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 ZNF79Q15937 498 aa-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 SNAP47Q5SQN1 464 aa-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 PRR9Q5T870 116 aa-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 SHEQ5VZ18 495 aa-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 UNQ9370/PRO34162Q6UXP9 181 aa-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 Q6ZRN7 208 aaPredicted RBP-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 FOXL2NBQ6ZUU3 175 aa-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 LCA10Q71F78 164 aa-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 PARGQ86W56 976 aa-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 AMOTL1Q8IY63 956 aa-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 TCP11L2Q8N4U5 519 aa-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 DCBLD1Q8N8Z6 715 aa-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 NEK9Q8TD19 979 aa-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 FBF1Q8TES7 1133 aa-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 PSPC1Q8WXF1 523 aaKnown RBP-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 FERMT2Q96AC1 680 aa-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 RPUSD4Q96CM3 377 aaKnown RBP-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 PHYHIPLQ96FC7 376 aa-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 PDXPQ96GD0 296 aa-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 SEC16BQ96JE7 1060 aa-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 FSD1Q9BTV5 496 aa-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 ZNF416Q9BWM5 594 aa-1.36□□□□□ -2.63
RNU4-88P-201ENST00000411220 TEX13BQ9BXU2 312 aa-1.36□□□□□ -2.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms