RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 PTX3P26022 381 aaPredicted RBP13.66□□□□□ -0.22
USP49-203ENST00000394253 TNK2Q07912 1038 aa13.66□□□□□ -0.22
USP49-203ENST00000394253 ZNF234Q14588 700 aa13.66□□□□□ -0.22
USP49-203ENST00000394253 RFX4Q33E94 735 aa13.66□□□□□ -0.22
USP49-203ENST00000394253 ZNF540Q8NDQ6 660 aa13.66□□□□□ -0.22
USP49-203ENST00000394253 ZNF548Q8NEK5 533 aaPredicted RBP13.66□□□□□ -0.22
USP49-203ENST00000394253 TRPV5Q9NQA5 729 aa13.66□□□□□ -0.22
USP49-203ENST00000394253 CD109Q6YHK3 1445 aa13.66□□□□□ -0.22
USP49-203ENST00000394253 PPEF2O14830 753 aa13.66□□□□□ -0.22
USP49-203ENST00000394253 RAB15P59190 212 aa13.66□□□□□ -0.22
USP49-203ENST00000394253 OXNAD1Q96HP4 312 aaPredicted RBP13.66□□□□□ -0.22
USP49-203ENST00000394253 AIFM3Q96NN9 605 aa13.66□□□□□ -0.22
USP49-203ENST00000394253 RPRD1AQ96P16 312 aaPredicted RBP13.66□□□□□ -0.22
USP49-203ENST00000394253 ZNF350Q9GZX5 532 aa13.66□□□□□ -0.22
USP49-203ENST00000394253 PCDHB2Q9Y5E7 798 aa13.66□□□□□ -0.22
USP49-203ENST00000394253 RBP3P10745 1247 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 GPD1P21695 349 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 NCOA4Q13772 614 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 FAM131AQ6UXB0 335 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 ACAT2Q9BWD1 397 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 PCDH12Q9NPG4 1184 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 A1CFQ9NQ94 594 aaKnown RBP13.65□□□□□ -0.22
USP49-203ENST00000394253 MKLN1Q9UL63 735 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 ORC5O43913 435 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 SLC25A12O75746 678 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 CYP2A7P20853 494 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 PDX1P52945 283 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 OAFQ86UD1 273 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 LEMD2Q8NC56 503 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 SLC30A5Q8TAD4 765 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 GPR108Q9NPR9 543 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 AASSQ9UDR5 926 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 CHL1O00533 1208 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 SLC25A23Q9BV35 468 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 SLC9A8Q9Y2E8 581 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 ARHGEF17Q96PE2 2063 aaPredicted RBP13.65□□□□□ -0.22
USP49-203ENST00000394253 H7C1W4 665 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 M0R036 132 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 MATN2O00339 956 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 PFDN5Q99471 154 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 LRRC40Q9H9A6 602 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 A0A1B0GTH6 734 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 MYCP01106 439 aaPredicted RBP13.65□□□□□ -0.22
USP49-203ENST00000394253 QSOX2Q6ZRP7 698 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 RNF44Q7L0R7 432 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 PTCD3Q96EY7 689 aaKnown RBP13.65□□□□□ -0.22
USP49-203ENST00000394253 C11orf24Q96F05 449 aaPredicted RBP13.65□□□□□ -0.22
USP49-203ENST00000394253 GMIPQ9P107 970 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 ETS1P14921 441 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 NFKB1P19838 968 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 CRABP2P29373 138 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 ACTR3P61158 418 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 CDKL4Q5MAI5 379 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 EEPD1Q7L9B9 569 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 PDPRQ8NCN5 879 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 RNPEPL1Q9HAU8 725 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 TOR4AQ9NXH8 423 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 PSMA1P25786 263 aaKnown RBP13.65□□□□□ -0.22
USP49-203ENST00000394253 SLC16A2P36021 539 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 GALCP54803 685 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 HUNKP57058 714 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 SMTNL2Q2TAL5 461 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 DNAJC16Q9Y2G8 782 aa13.65□□□□□ -0.22
USP49-203ENST00000394253 FANCAO15360 1455 aa13.65□□□□□ -0.23
USP49-203ENST00000394253 COILP38432 576 aaPredicted RBP13.64□□□□□ -0.23
USP49-203ENST00000394253 CCR4P51679 360 aa13.64□□□□□ -0.23
USP49-203ENST00000394253 NAA20P61599 178 aa13.64□□□□□ -0.23
USP49-203ENST00000394253 HMBOX1Q6NT76 420 aa13.64□□□□□ -0.23
USP49-203ENST00000394253 TMEM179Q6ZVK1 233 aa13.64□□□□□ -0.23
USP49-203ENST00000394253 OSBP2Q969R2 916 aa13.64□□□□□ -0.23
USP49-203ENST00000394253 TUBB1Q9H4B7 451 aa13.64□□□□□ -0.23
USP49-203ENST00000394253 CDHR2Q9BYE9 1310 aa13.64□□□□□ -0.23
USP49-203ENST00000394253 RARGP13631 454 aa13.64□□□□□ -0.23
USP49-203ENST00000394253 ADD2P35612 726 aa13.64□□□□□ -0.23
USP49-203ENST00000394253 RPL3P39023 403 aaKnown RBP13.64□□□□□ -0.23
USP49-203ENST00000394253 CDK7P50613 346 aa13.64□□□□□ -0.23
USP49-203ENST00000394253 USP11P51784 963 aa13.64□□□□□ -0.23
USP49-203ENST00000394253 DEFA5Q01523 94 aa13.64□□□□□ -0.23
USP49-203ENST00000394253 CYP20A1Q6UW02 462 aa13.64□□□□□ -0.23
USP49-203ENST00000394253 RASGEF1AQ8N9B8 481 aa13.64□□□□□ -0.23
USP49-203ENST00000394253 JPH1Q9HDC5 661 aaPredicted RBP13.64□□□□□ -0.23
USP49-203ENST00000394253 HPF1Q9NWY4 346 aa13.64□□□□□ -0.23
USP49-203ENST00000394253 FEM1BQ9UK73 627 aa13.64□□□□□ -0.23
USP49-203ENST00000394253 MYBPC1Q00872 1141 aa13.64□□□□□ -0.23
USP49-203ENST00000394253 MTA1Q13330 715 aa13.64□□□□□ -0.23
USP49-203ENST00000394253 PDK2Q15119 407 aa13.64□□□□□ -0.23
USP49-203ENST00000394253 MEA1Q16626 185 aa13.64□□□□□ -0.23
USP49-203ENST00000394253 BMT2Q1RMZ1 405 aa13.64□□□□□ -0.23
USP49-203ENST00000394253 CBWD2Q8IUF1 395 aa13.64□□□□□ -0.23
USP49-203ENST00000394253 OR2W6PQ8NHA6 318 aa13.64□□□□□ -0.23
USP49-203ENST00000394253 ZNF214Q9UL59 606 aaPredicted RBP13.64□□□□□ -0.23
USP49-203ENST00000394253 SIN3BO75182 1162 aa13.64□□□□□ -0.23
USP49-203ENST00000394253 ADAM8P78325 824 aa13.64□□□□□ -0.23
USP49-203ENST00000394253 SLC20A2Q08357 652 aa13.64□□□□□ -0.23
USP49-203ENST00000394253 CBX3Q13185 183 aa13.64□□□□□ -0.23
USP49-203ENST00000394253 UBE2SQ16763 222 aa13.64□□□□□ -0.23
USP49-203ENST00000394253 FAM76BQ5HYJ3 339 aa13.64□□□□□ -0.23
USP49-203ENST00000394253 BHLHE22Q8NFJ8 381 aaPredicted RBP13.64□□□□□ -0.23
USP49-203ENST00000394253 BPIFB6Q8NFQ5 453 aa13.64□□□□□ -0.23
USP49-203ENST00000394253 ATXN2LQ8WWM7 1075 aaKnown RBP13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 84.8 ms