RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 ITGA9Q13797 1035 aa16.68■□□□□ 0.26
NKX3-1-201ENST00000380871 GRB14Q14449 540 aa16.68■□□□□ 0.26
NKX3-1-201ENST00000380871 NCBP2-AS2Q69YL0 99 aa16.68■□□□□ 0.26
NKX3-1-201ENST00000380871 KYAT3Q6YP21 454 aaKnown RBP16.68■□□□□ 0.26
NKX3-1-201ENST00000380871 FRMD7Q6ZUT3 714 aa16.68■□□□□ 0.26
NKX3-1-201ENST00000380871 DHDDSQ86SQ9 333 aa16.68■□□□□ 0.26
NKX3-1-201ENST00000380871 ZNF410Q86VK4 478 aa16.68■□□□□ 0.26
NKX3-1-201ENST00000380871 PPP1R36Q96LQ0 422 aa16.68■□□□□ 0.26
NKX3-1-201ENST00000380871 NDUFV1P49821 464 aa16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 AFF1P51825 1210 aaKnown RBP16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 PGGT1BP53609 377 aa16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 HUNKP57058 714 aa16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 NIPAL4Q0D2K0 466 aa16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 SNX17Q15036 470 aa16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 DCAF4L1Q3SXM0 396 aa16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 DCAF6Q58WW2 860 aa16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 TMCO4Q5TGY1 634 aa16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 SPRYD7Q5W111 196 aa16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 RASSF3Q86WH2 238 aa16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 IFNLR1Q8IU57 520 aaPredicted RBP16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 DEFB107AQ8IZN7 70 aa16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 OR6Y1Q8NGX8 325 aa16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 ARNTL2Q8WYA1 636 aa16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 C1orf21Q9H246 121 aa16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 DOCK3Q8IZD9 2030 aa16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 DCXO43602 365 aa16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 CREB3O43889 395 aa16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 TPSB2P20231 275 aa16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 SERPINB9P50453 376 aa16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 DLG1Q12959 904 aa16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 TAF1CQ15572 869 aaPredicted RBP16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 TPSAB1Q15661 275 aa16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 ARRDC4Q8NCT1 418 aa16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 TFB1MQ8WVM0 346 aaKnown RBP16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 LPPQ93052 612 aa16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 QKIQ96PU8 341 aaKnown RBP eCLIP16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 SYBUQ9NX95 663 aa16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 CDH22Q9UJ99 828 aa16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 DPYSL4O14531 572 aa16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 MDM4O15151 490 aa16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 ITGA2BP08514 1039 aa16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 SEMA5AQ13591 1074 aa16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 GSTA3Q16772 222 aa16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 PDPK2PQ6A1A2 396 aa16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 APPL2Q8NEU8 664 aa16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 RAB3IL1Q8TBN0 382 aa16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 SLC35F5Q8WV83 523 aa16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 TRAPPC9Q96Q05 1148 aa16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 NR1H4Q96RI1 486 aaPredicted RBP16.67■□□□□ 0.26
NKX3-1-201ENST00000380871 RRN3P2A6NIE6 340 aa16.66■□□□□ 0.26
NKX3-1-201ENST00000380871 E9PBE3 544 aa16.66■□□□□ 0.26
NKX3-1-201ENST00000380871 MFSD11O43934 449 aa16.66■□□□□ 0.26
NKX3-1-201ENST00000380871 KLHL41O60662 606 aa16.66■□□□□ 0.26
NKX3-1-201ENST00000380871 USP12O75317 370 aa16.66■□□□□ 0.26
NKX3-1-201ENST00000380871 IFRD2Q12894 506 aaPredicted RBP16.66■□□□□ 0.26
NKX3-1-201ENST00000380871 CBLBQ13191 982 aa16.66■□□□□ 0.26
NKX3-1-201ENST00000380871 PKDCCQ504Y2 493 aa16.66■□□□□ 0.26
NKX3-1-201ENST00000380871 TIFABQ6ZNK6 161 aa16.66■□□□□ 0.26
NKX3-1-201ENST00000380871 MFN1Q8IWA4 741 aa16.66■□□□□ 0.26
NKX3-1-201ENST00000380871 PLD6Q8N2A8 252 aaKnown RBP16.66■□□□□ 0.26
NKX3-1-201ENST00000380871 GPAMQ9HCL2 828 aa16.66■□□□□ 0.26
NKX3-1-201ENST00000380871 ZNF195O14628 629 aa16.66■□□□□ 0.26
NKX3-1-201ENST00000380871 ZBTB14O43829 449 aa16.66■□□□□ 0.26
NKX3-1-201ENST00000380871 HUS1O60921 280 aa16.66■□□□□ 0.26
NKX3-1-201ENST00000380871 ITGAXP20702 1163 aa16.66■□□□□ 0.26
NKX3-1-201ENST00000380871 GSTT1P30711 240 aa16.66■□□□□ 0.26
NKX3-1-201ENST00000380871 GRIA2P42262 883 aa16.66■□□□□ 0.26
NKX3-1-201ENST00000380871 PSEN2P49810 448 aa16.66■□□□□ 0.26
NKX3-1-201ENST00000380871 ADIGQ0VDE8 80 aa16.66■□□□□ 0.26
NKX3-1-201ENST00000380871 CUL3Q13618 768 aa16.66■□□□□ 0.26
NKX3-1-201ENST00000380871 TBCCQ15814 346 aa16.66■□□□□ 0.26
NKX3-1-201ENST00000380871 PDSS2Q86YH6 399 aa16.66■□□□□ 0.26
NKX3-1-201ENST00000380871 COLGALT1Q8NBJ5 622 aa16.66■□□□□ 0.26
NKX3-1-201ENST00000380871 HTR3CQ8WXA8 447 aa16.66■□□□□ 0.26
NKX3-1-201ENST00000380871 TBCBQ99426 244 aa16.66■□□□□ 0.26
NKX3-1-201ENST00000380871 AP5M1Q9H0R1 490 aa16.66■□□□□ 0.26
NKX3-1-201ENST00000380871 VRTNQ9H8Y1 702 aa16.66■□□□□ 0.26
NKX3-1-201ENST00000380871 PDP2Q9P2J9 529 aa16.66■□□□□ 0.26
NKX3-1-201ENST00000380871 UBQLN1Q9UMX0 589 aaKnown RBP16.66■□□□□ 0.26
NKX3-1-201ENST00000380871 LOC285556D6RIA3 1793 aa16.66■□□□□ 0.26
NKX3-1-201ENST00000380871 ZNF638Q14966 1978 aaKnown RBP16.66■□□□□ 0.26
NKX3-1-201ENST00000380871 RBM47A0AV96 593 aaKnown RBP16.65■□□□□ 0.26
NKX3-1-201ENST00000380871 DESP17661 470 aa16.65■□□□□ 0.26
NKX3-1-201ENST00000380871 PSMB4P28070 264 aa16.65■□□□□ 0.26
NKX3-1-201ENST00000380871 TKTP29401 623 aaKnown RBP16.65■□□□□ 0.26
NKX3-1-201ENST00000380871 SERPINB6P35237 376 aa16.65■□□□□ 0.26
NKX3-1-201ENST00000380871 DLG2Q15700 870 aa16.65■□□□□ 0.26
NKX3-1-201ENST00000380871 DPYSL2Q16555 572 aa16.65■□□□□ 0.26
NKX3-1-201ENST00000380871 KYAT1Q16773 422 aa16.65■□□□□ 0.26
NKX3-1-201ENST00000380871 RASIP1Q5U651 963 aa16.65■□□□□ 0.26
NKX3-1-201ENST00000380871 WSCD1Q658N2 575 aa16.65■□□□□ 0.26
NKX3-1-201ENST00000380871 NAPRTQ6XQN6 538 aa16.65■□□□□ 0.26
NKX3-1-201ENST00000380871 MARK2Q7KZI7 788 aaKnown RBP16.65■□□□□ 0.26
NKX3-1-201ENST00000380871 APLFQ8IW19 511 aaPredicted RBP16.65■□□□□ 0.26
NKX3-1-201ENST00000380871 DEFB106AQ8N104 65 aa16.65■□□□□ 0.26
NKX3-1-201ENST00000380871 CCNYQ8ND76 341 aa16.65■□□□□ 0.26
NKX3-1-201ENST00000380871 SLC4A5Q9BY07 1137 aa16.65■□□□□ 0.26
NKX3-1-201ENST00000380871 COL1A2P08123 1366 aa16.65■□□□□ 0.26
NKX3-1-201ENST00000380871 GLRA3O75311 464 aa16.65■□□□□ 0.26
NKX3-1-201ENST00000380871 SERPINE1P05121 402 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms