RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 HOXC8P31273 242 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 GPR15P49685 360 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 PTSQ03393 145 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 SCN1BQ07699 218 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 ZNF549Q6P9A3 640 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 NEDD1Q8NHV4 660 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 TMC2Q8TDI7 906 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 ZNF222Q9UK12 451 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 TRHDEQ9UKU6 1024 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.54□□□□□ -0.08
COL7A1-201ENST00000328333 ERN1O75460 977 aaKnown RBP14.54□□□□□ -0.08
COL7A1-201ENST00000328333 SMNDC1O75940 238 aaKnown RBP eCLIP14.54□□□□□ -0.08
COL7A1-201ENST00000328333 PYDC2Q56P42 97 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 DENND5BQ6ZUT9 1274 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 LEMD2Q8NC56 503 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 VAT1Q99536 393 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 RERGLQ9H628 205 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 TSR3Q9UJK0 312 aaKnown RBP14.54□□□□□ -0.08
COL7A1-201ENST00000328333 STX16-NPEPL1H3BU86 382 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 STX16O14662 325 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 IDO1P14902 403 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 CYP2A7P20853 494 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 RAB43Q86YS6 212 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 FBXO25Q8TCJ0 367 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 QRFPRQ96P65 431 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 SEPHS2Q99611 448 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 PPP1R3GB7ZBB8 358 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 DDX53Q86TM3 631 aaKnown RBP14.54□□□□□ -0.08
COL7A1-201ENST00000328333 EMC1Q8N766 993 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 SPIRE2Q8WWL2 714 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 NUDT12Q9BQG2 462 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 ACTR8Q9H981 624 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 PIDD1Q9HB75 910 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 NPHP3-ACAD11A0A0J9YXS1 232 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 PTGS2P35354 604 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 PKN1Q16512 942 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 IER5Q5VY09 327 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 DGCR6LQ9BY27 220 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 LIMD1Q9UGP4 676 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 SSR3Q9UNL2 185 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 CHST10O43529 356 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 CD151P48509 253 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 SLC11A2P49281 568 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 PROSER3Q2NL68 480 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 ATG14Q6ZNE5 492 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 SERAC1Q96JX3 654 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 DPY30Q9C005 99 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 PRKAG3Q9UGI9 489 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 HLA-DRAP01903 254 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 CHRNGP07510 517 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 OXCT1P55809 520 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 GALNT3Q14435 633 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 ERICH5Q6P6B1 374 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 TAS2R13Q9NYV9 303 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 MLXQ9UH92 298 aa14.54□□□□□ -0.08
COL7A1-201ENST00000328333 OR14I1A6ND48 311 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 USP17L10C9JJH3 530 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 YAF2Q8IY57 180 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 FBXO39Q8N4B4 442 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 POC5Q8NA72 575 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 CLHC1Q8NHS4 586 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 GIPC3Q8TF64 312 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 GDF3Q9NR23 364 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 PCDHGA10Q9Y5H3 936 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 TRIM48Q8IWZ4 208 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 KLF6Q99612 283 aaPredicted RBP14.53□□□□□ -0.08
COL7A1-201ENST00000328333 MTG1Q9BT17 334 aaPredicted RBP14.53□□□□□ -0.08
COL7A1-201ENST00000328333 CDC40O60508 579 aaKnown RBP eCLIP14.53□□□□□ -0.08
COL7A1-201ENST00000328333 GSSP48637 474 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 BST2Q10589 180 aaKnown RBP14.53□□□□□ -0.08
COL7A1-201ENST00000328333 DOK7Q18PE1 504 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 HELQQ8TDG4 1101 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 ABCB10Q9NRK6 738 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 MYL3P08590 195 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 MAGEA2P43356 314 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 USPL1Q5W0Q7 1092 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 PM20D2Q8IYS1 436 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 COQ6Q9Y2Z9 468 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 KDM6BO15054 1643 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 MROH2AA6NES4 1674 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 ZNF879B4DU55 563 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 MPZL2O60487 215 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 SEMA3DO95025 777 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 ADRA2BP18089 450 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 ERMARDQ5T6L9 678 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 KDELC2Q7Z4H8 507 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 GSDMCQ9BYG8 508 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 THRBP10828 461 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 GOLGA7BQ2TAP0 167 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 IL22Q9GZX6 179 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 MCUBQ9NWR8 336 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP14.53□□□□□ -0.08
COL7A1-201ENST00000328333 MGAT4AQ9UM21 535 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 WDR37Q9Y2I8 494 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 CHADO15335 359 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 NR4A1P22736 598 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 CYP24A1Q07973 514 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 RABL6Q3YEC7 729 aaPredicted RBP14.53□□□□□ -0.08
COL7A1-201ENST00000328333 SIX5Q8N196 739 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 TATDN2Q93075 761 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms