RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 CLK4Q9HAZ1 481 aaKnown RBP14.12□□□□□ -0.15
CSPG4-201ENST00000308508 SPAG4Q9NPE6 437 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 TRMT13Q9NUP7 481 aaKnown RBP14.12□□□□□ -0.15
CSPG4-201ENST00000308508 DMGDHQ9UI17 866 aaKnown RBP14.12□□□□□ -0.15
CSPG4-201ENST00000308508 CYP1A1P04798 512 aaPredicted RBP14.12□□□□□ -0.15
CSPG4-201ENST00000308508 CHRNGP07510 517 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 ENO2P09104 434 aaPredicted RBP14.12□□□□□ -0.15
CSPG4-201ENST00000308508 CYP2F1P24903 491 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 PBLDP30039 288 aaPredicted RBP14.12□□□□□ -0.15
CSPG4-201ENST00000308508 IDH2P48735 452 aaKnown RBP14.12□□□□□ -0.15
CSPG4-201ENST00000308508 SBK1Q52WX2 424 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 ZNF621Q6ZSS3 439 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 DHDDSQ86SQ9 333 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 HIPK1Q86Z02 1210 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 ARL10Q8N8L6 244 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 HPS1Q92902 700 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 LRMDAQ9H2I8 198 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 SRP68Q9UHB9 627 aaKnown RBP14.12□□□□□ -0.15
CSPG4-201ENST00000308508 VPS51Q9UID3 782 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 ELK3P41970 407 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 TMEM132BQ14DG7 1078 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 STRIP1Q5VSL9 837 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 MFSD7Q6UXD7 560 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 AENQ8WTP8 325 aaKnown RBP14.12□□□□□ -0.15
CSPG4-201ENST00000308508 CLIC5Q9NZA1 410 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 S100A3P33764 101 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 OR1G1P47890 313 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 USP46P62068 366 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 RNF43Q68DV7 783 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 ZNF540Q8NDQ6 660 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 TRPV3Q8NET8 790 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 METTL6Q8TCB7 284 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 UBP1Q9NZI7 540 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 PCDHA3Q9Y5H8 950 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 GMPPBQ9Y5P6 360 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 MYO10Q9HD67 2058 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 CCDC189A1A4V9 331 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 UNC5CO95185 931 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 NPTXRO95502 500 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 STARD3Q14849 445 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 POU6F1Q14863 301 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 AGAP11Q8TF27 550 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 BBS4Q96RK4 519 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 MTA1Q13330 715 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 KLHL23Q8NBE8 558 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 SEMA4DQ92854 862 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 NLNQ9BYT8 704 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 NT5MQ9NPB1 228 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 TMCO1Q9UM00 188 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 A0A096LPK6 155 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 MT-CO1P00395 513 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 UMPSP11172 480 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 ITGA3P26006 1051 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 RPS6KA3P51812 740 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 ZFP69Q49AA0 526 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 ERMARDQ5T6L9 678 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 MILR1Q7Z6M3 343 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 FAM20CQ8IXL6 584 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 CDK5RAP1Q96SZ6 601 aaKnown RBP14.11□□□□□ -0.15
CSPG4-201ENST00000308508 DCLK3Q9C098 648 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 KIAA1683Q9H0B3 1180 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 SSR3Q9UNL2 185 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 LYVE1Q9Y5Y7 322 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 ABLIM1O14639 778 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 CAMTA2O94983 1202 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 FAUP35544 74 aaKnown RBP14.11□□□□□ -0.15
CSPG4-201ENST00000308508 TYSND1Q2T9J0 566 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 TTC7BQ86TV6 843 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 ENGASEQ8NFI3 743 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 PCDHB7Q9Y5E2 793 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 RRN3P2A6NIE6 340 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 RNASEH1O60930 286 aaKnown RBP14.11□□□□□ -0.15
CSPG4-201ENST00000308508 ITGA2P17301 1181 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 RPL14P50914 215 aaKnown RBP14.11□□□□□ -0.15
CSPG4-201ENST00000308508 POMKQ9H5K3 350 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 COL15A1P39059 1388 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 PCP4L1A6NKN8 68 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 GRIA3P42263 894 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 KPNA1P52294 538 aaPredicted RBP14.11□□□□□ -0.15
CSPG4-201ENST00000308508 RPTNQ6XPR3 784 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 USP49Q70CQ1 688 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 SLC47A2Q86VL8 602 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 UBQLN1Q9UMX0 589 aaKnown RBP14.11□□□□□ -0.15
CSPG4-201ENST00000308508 CNTNAP5Q8WYK1 1306 aa14.11□□□□□ -0.15
CSPG4-201ENST00000308508 WDR27A2RRH5 827 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 ZNF879B4DU55 563 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 PSMD11O00231 422 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 C21orf2O43822 256 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 PLCL1Q15111 1095 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 BTN2A1Q7KYR7 527 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 UCMAQ8WVF2 138 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 OSGEPQ9NPF4 335 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 GDF3Q9NR23 364 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 FGFR2P21802 821 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 TUBA4AP68366 448 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 C1QBPQ07021 282 aaKnown RBP14.1□□□□□ -0.15
CSPG4-201ENST00000308508 ACAP1Q15027 740 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 RNF19BQ6ZMZ0 732 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 ZSCAN2Q7Z7L9 614 aaPredicted RBP14.1□□□□□ -0.15
CSPG4-201ENST00000308508 CLYBLQ8N0X4 340 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms