RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 SLC22A16Q86VW1 577 aa14.99□□□□□ -0.01
PTPRA-201ENST00000216877 GATAD2AQ86YP4 633 aa14.99□□□□□ -0.01
PTPRA-201ENST00000216877 SNX31Q8N9S9 440 aa14.99□□□□□ -0.01
PTPRA-201ENST00000216877 MINPP1Q9UNW1 487 aa14.99□□□□□ -0.01
PTPRA-201ENST00000216877 PCDHGA8Q9Y5G5 932 aa14.99□□□□□ -0.01
PTPRA-201ENST00000216877 CLDN25C9JDP6 229 aa14.98□□□□□ -0.01
PTPRA-201ENST00000216877 SNPHO15079 494 aa14.98□□□□□ -0.01
PTPRA-201ENST00000216877 HTRA2O43464 458 aaPredicted RBP14.98□□□□□ -0.01
PTPRA-201ENST00000216877 HPCAL1P37235 193 aa14.98□□□□□ -0.01
PTPRA-201ENST00000216877 GPR162Q16538 588 aa14.98□□□□□ -0.01
PTPRA-201ENST00000216877 TFDP3Q5H9I0 405 aa14.98□□□□□ -0.01
PTPRA-201ENST00000216877 DNAJC24Q6P3W2 148 aa14.98□□□□□ -0.01
PTPRA-201ENST00000216877 UBR7Q8N806 425 aa14.98□□□□□ -0.01
PTPRA-201ENST00000216877 PSD4Q8NDX1 1056 aa14.98□□□□□ -0.01
PTPRA-201ENST00000216877 NRBF2Q96F24 287 aa14.98□□□□□ -0.01
PTPRA-201ENST00000216877 FBXL20Q96IG2 436 aa14.98□□□□□ -0.01
PTPRA-201ENST00000216877 WDR83Q9BRX9 315 aaKnown RBP14.98□□□□□ -0.01
PTPRA-201ENST00000216877 RTKNQ9BST9 563 aa14.98□□□□□ -0.01
PTPRA-201ENST00000216877 FANCEQ9HB96 536 aa14.98□□□□□ -0.01
PTPRA-201ENST00000216877 TMCC2O75069 709 aa14.98□□□□□ -0.01
PTPRA-201ENST00000216877 NAT2P11245 290 aa14.98□□□□□ -0.01
PTPRA-201ENST00000216877 TNNI1P19237 187 aa14.98□□□□□ -0.01
PTPRA-201ENST00000216877 TYK2P29597 1187 aa14.98□□□□□ -0.01
PTPRA-201ENST00000216877 PRKAA2P54646 552 aa14.98□□□□□ -0.01
PTPRA-201ENST00000216877 WDR44Q5JSH3 913 aa14.98□□□□□ -0.01
PTPRA-201ENST00000216877 KRT39Q6A163 491 aa14.98□□□□□ -0.01
PTPRA-201ENST00000216877 TRMT10BQ6PF06 316 aaKnown RBP14.98□□□□□ -0.01
PTPRA-201ENST00000216877 OR7G1Q8NGA0 311 aa14.98□□□□□ -0.01
PTPRA-201ENST00000216877 TRPC4APQ8TEL6 797 aa14.98□□□□□ -0.01
PTPRA-201ENST00000216877 TRUB1Q8WWH5 349 aaKnown RBP14.98□□□□□ -0.01
PTPRA-201ENST00000216877 SHC3Q92529 594 aa14.98□□□□□ -0.01
PTPRA-201ENST00000216877 ELMO1Q92556 727 aa14.98□□□□□ -0.01
PTPRA-201ENST00000216877 ZNF778Q96MU6 729 aa14.98□□□□□ -0.01
PTPRA-201ENST00000216877 HMG20AQ9NP66 347 aa14.98□□□□□ -0.01
PTPRA-201ENST00000216877 ZNF358Q9NW07 568 aa14.98□□□□□ -0.01
PTPRA-201ENST00000216877 GDAP2Q9NXN4 497 aa14.98□□□□□ -0.01
PTPRA-201ENST00000216877 SLC9A2Q9UBY0 812 aa14.98□□□□□ -0.01
PTPRA-201ENST00000216877 SPEF1Q9Y4P9 236 aa14.98□□□□□ -0.01
PTPRA-201ENST00000216877 RGPD3A6NKT7 1758 aaPredicted RBP14.98□□□□□ -0.01
PTPRA-201ENST00000216877 RGPD4Q7Z3J3 1758 aa14.98□□□□□ -0.01
PTPRA-201ENST00000216877 CCDC162PA2VCL2 907 aa14.97□□□□□ -0.01
PTPRA-201ENST00000216877 GOLGA8CPA6NN73 597 aa14.97□□□□□ -0.01
PTPRA-201ENST00000216877 PRPSAP1Q14558 356 aa14.97□□□□□ -0.01
PTPRA-201ENST00000216877 HYIQ5T013 277 aa14.97□□□□□ -0.01
PTPRA-201ENST00000216877 KCTD6Q8NC69 237 aa14.97□□□□□ -0.01
PTPRA-201ENST00000216877 SPATA18Q8TC71 538 aa14.97□□□□□ -0.01
PTPRA-201ENST00000216877 APBA2Q99767 749 aa14.97□□□□□ -0.01
PTPRA-201ENST00000216877 FAM86B1E9PN63 330 aa14.97□□□□□ -0.01
PTPRA-201ENST00000216877 NRP1O14786 923 aa14.97□□□□□ -0.01
PTPRA-201ENST00000216877 SLC16A4O15374 487 aa14.97□□□□□ -0.01
PTPRA-201ENST00000216877 PPP1R11O60927 126 aaPredicted RBP14.97□□□□□ -0.01
PTPRA-201ENST00000216877 RPS6KA4O75676 772 aa14.97□□□□□ -0.01
PTPRA-201ENST00000216877 TSPAN9O75954 239 aa14.97□□□□□ -0.01
PTPRA-201ENST00000216877 CACNB3P54284 484 aa14.97□□□□□ -0.01
PTPRA-201ENST00000216877 NFIXQ14938 502 aa14.97□□□□□ -0.01
PTPRA-201ENST00000216877 ZIK1Q3SY52 487 aaPredicted RBP14.97□□□□□ -0.01
PTPRA-201ENST00000216877 TEX44Q53QW1 395 aa14.97□□□□□ -0.01
PTPRA-201ENST00000216877 BRDTQ58F21 947 aaPredicted RBP14.97□□□□□ -0.01
PTPRA-201ENST00000216877 PPM1JQ5JR12 505 aa14.97□□□□□ -0.01
PTPRA-201ENST00000216877 CCDC81Q6ZN84 652 aa14.97□□□□□ -0.01
PTPRA-201ENST00000216877 SAMD3Q8N6K7 520 aa14.97□□□□□ -0.01
PTPRA-201ENST00000216877 BHMTQ93088 406 aa14.97□□□□□ -0.01
PTPRA-201ENST00000216877 VTI1AQ96AJ9 217 aa14.97□□□□□ -0.01
PTPRA-201ENST00000216877 ACDQ96AP0 544 aa14.97□□□□□ -0.01
PTPRA-201ENST00000216877 NLRP4Q96MN2 994 aa14.97□□□□□ -0.01
PTPRA-201ENST00000216877 PKD2L2Q9NZM6 624 aa14.97□□□□□ -0.01
PTPRA-201ENST00000216877 NXF1Q9UBU9 619 aaKnown RBP14.97□□□□□ -0.01
PTPRA-201ENST00000216877 DEAF1O75398 565 aaPredicted RBP14.97□□□□□ -0.01
PTPRA-201ENST00000216877 SERPINE1P05121 402 aa14.97□□□□□ -0.01
PTPRA-201ENST00000216877 F7P08709 466 aaPredicted RBP14.97□□□□□ -0.01
PTPRA-201ENST00000216877 MMP10P09238 476 aa14.97□□□□□ -0.01
PTPRA-201ENST00000216877 ZNF26P17031 533 aaPredicted RBP14.97□□□□□ -0.01
PTPRA-201ENST00000216877 ATP2B4P23634 1241 aa14.97□□□□□ -0.01
PTPRA-201ENST00000216877 DSG3P32926 999 aa14.97□□□□□ -0.01
PTPRA-201ENST00000216877 SELENBP1Q13228 472 aa14.97□□□□□ -0.01
PTPRA-201ENST00000216877 TRIM25Q14258 630 aaKnown RBP14.97□□□□□ -0.01
PTPRA-201ENST00000216877 CCDC58Q4VC31 144 aa14.97□□□□□ -0.01
PTPRA-201ENST00000216877 PITRM1Q5JRX3 1037 aa14.97□□□□□ -0.01
PTPRA-201ENST00000216877 IQSEC1Q6DN90 963 aa14.97□□□□□ -0.01
PTPRA-201ENST00000216877 INTS5Q6P9B9 1019 aaKnown RBP14.97□□□□□ -0.01
PTPRA-201ENST00000216877 ZNF781Q8N8C0 355 aa14.97□□□□□ -0.01
PTPRA-201ENST00000216877 FBXL13Q8NEE6 735 aa14.97□□□□□ -0.01
PTPRA-201ENST00000216877 FEZF2Q8TBJ5 459 aa14.97□□□□□ -0.01
PTPRA-201ENST00000216877 HM13Q8TCT9 377 aa14.97□□□□□ -0.01
PTPRA-201ENST00000216877 SLC7A5P2Q9GIP4 190 aa14.97□□□□□ -0.01
PTPRA-201ENST00000216877 IFT52Q9Y366 437 aa14.97□□□□□ -0.01
PTPRA-201ENST00000216877 EIF3DO15371 548 aaKnown RBP eCLIP14.96□□□□□ -0.01
PTPRA-201ENST00000216877 CLPXO76031 633 aa14.96□□□□□ -0.01
PTPRA-201ENST00000216877 CSH1P0DML2 217 aa14.96□□□□□ -0.01
PTPRA-201ENST00000216877 CSH2P0DML3 217 aa14.96□□□□□ -0.01
PTPRA-201ENST00000216877 ABCG1P45844 678 aa14.96□□□□□ -0.01
PTPRA-201ENST00000216877 MAMLD1Q13495 774 aa14.96□□□□□ -0.01
PTPRA-201ENST00000216877 CYP4V2Q6ZWL3 525 aaPredicted RBP14.96□□□□□ -0.01
PTPRA-201ENST00000216877 DPH6Q7L8W6 267 aa14.96□□□□□ -0.01
PTPRA-201ENST00000216877 GOLM1Q8NBJ4 401 aa14.96□□□□□ -0.01
PTPRA-201ENST00000216877 NEDD1Q8NHV4 660 aa14.96□□□□□ -0.01
PTPRA-201ENST00000216877 EFCAB1Q9HAE3 211 aa14.96□□□□□ -0.01
PTPRA-201ENST00000216877 TCEAL9Q9UHQ7 104 aa14.96□□□□□ -0.01
PTPRA-201ENST00000216877 TLL2Q9Y6L7 1015 aa14.96□□□□□ -0.01
PTPRA-201ENST00000216877 NRXN2Q9P2S2 1712 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms