RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 H3BRJ5 948 aa10.83□□□□□ -0.68
VPS11-208ENST00000621676 TEX28O15482 410 aa10.83□□□□□ -0.68
VPS11-208ENST00000621676 TTC4O95801 387 aa10.83□□□□□ -0.68
VPS11-208ENST00000621676 NFKB1P19838 968 aa10.83□□□□□ -0.68
VPS11-208ENST00000621676 OR1E1P30953 314 aa10.83□□□□□ -0.68
VPS11-208ENST00000621676 PCK1P35558 622 aa10.83□□□□□ -0.68
VPS11-208ENST00000621676 AVPR1AP37288 418 aa10.83□□□□□ -0.68
VPS11-208ENST00000621676 ALDH1A3P47895 512 aa10.83□□□□□ -0.68
VPS11-208ENST00000621676 ITIH3Q06033 890 aa10.83□□□□□ -0.68
VPS11-208ENST00000621676 DSC1Q08554 894 aa10.83□□□□□ -0.68
VPS11-208ENST00000621676 SEPT7Q16181 437 aaKnown RBP10.83□□□□□ -0.68
VPS11-208ENST00000621676 CENPUQ71F23 418 aa10.83□□□□□ -0.68
VPS11-208ENST00000621676 ZNF567Q8N184 647 aa10.83□□□□□ -0.68
VPS11-208ENST00000621676 RYBPQ8N488 228 aaPredicted RBP10.83□□□□□ -0.68
VPS11-208ENST00000621676 MAIP1Q8WWC4 291 aa10.83□□□□□ -0.68
VPS11-208ENST00000621676 IGSF8Q969P0 613 aa10.83□□□□□ -0.68
VPS11-208ENST00000621676 ZNF333Q96JL9 665 aa10.83□□□□□ -0.68
VPS11-208ENST00000621676 DNAI2Q9GZS0 605 aa10.83□□□□□ -0.68
VPS11-208ENST00000621676 USP29Q9HBJ7 922 aa10.83□□□□□ -0.68
VPS11-208ENST00000621676 KANSL3Q9P2N6 904 aa10.83□□□□□ -0.68
VPS11-208ENST00000621676 ZC3H7BQ9UGR2 993 aaKnown RBP10.83□□□□□ -0.68
VPS11-208ENST00000621676 OGDHLQ9ULD0 1010 aa10.83□□□□□ -0.68
VPS11-208ENST00000621676 SHOC2Q9UQ13 582 aa10.83□□□□□ -0.68
VPS11-208ENST00000621676 ANTXRLA6NF34 631 aa10.83□□□□□ -0.68
VPS11-208ENST00000621676 CPP00450 1065 aa10.83□□□□□ -0.68
VPS11-208ENST00000621676 MBL2P11226 248 aaPredicted RBP10.83□□□□□ -0.68
VPS11-208ENST00000621676 CCR1P32246 355 aa10.83□□□□□ -0.68
VPS11-208ENST00000621676 CTNNB1P35222 781 aa10.83□□□□□ -0.68
VPS11-208ENST00000621676 PTK6Q13882 451 aa10.83□□□□□ -0.68
VPS11-208ENST00000621676 PCBP1Q15365 356 aaKnown RBP eCLIP10.83□□□□□ -0.68
VPS11-208ENST00000621676 TMC5Q6UXY8 1006 aa10.83□□□□□ -0.68
VPS11-208ENST00000621676 ZNF572Q7Z3I7 529 aaPredicted RBP10.83□□□□□ -0.68
VPS11-208ENST00000621676 PSMG2Q969U7 264 aa10.83□□□□□ -0.68
VPS11-208ENST00000621676 MFSD3Q96ES6 412 aa10.83□□□□□ -0.68
VPS11-208ENST00000621676 IGSF21Q96ID5 467 aa10.83□□□□□ -0.68
VPS11-208ENST00000621676 FTHL17Q9BXU8 183 aa10.83□□□□□ -0.68
VPS11-208ENST00000621676 RBM22Q9NW64 420 aaKnown RBP eCLIP10.83□□□□□ -0.68
VPS11-208ENST00000621676 MYOFQ9NZM1 2061 aa10.82□□□□□ -0.68
VPS11-208ENST00000621676 URODP06132 367 aa10.82□□□□□ -0.68
VPS11-208ENST00000621676 KITP10721 976 aa10.82□□□□□ -0.68
VPS11-208ENST00000621676 MAN1A1P33908 653 aa10.82□□□□□ -0.68
VPS11-208ENST00000621676 ERVFC1P60507 584 aa10.82□□□□□ -0.68
VPS11-208ENST00000621676 OVGP1Q12889 678 aa10.82□□□□□ -0.68
VPS11-208ENST00000621676 USP41Q3LFD5 358 aa10.82□□□□□ -0.68
VPS11-208ENST00000621676 C9orf50Q5SZB4 431 aa10.82□□□□□ -0.68
VPS11-208ENST00000621676 AGGF1Q8N302 714 aaeCLIP10.82□□□□□ -0.68
VPS11-208ENST00000621676 SLC39A8Q9C0K1 460 aa10.82□□□□□ -0.68
VPS11-208ENST00000621676 HCFC2Q9Y5Z7 792 aa10.82□□□□□ -0.68
VPS11-208ENST00000621676 HS3ST4Q9Y661 456 aa10.82□□□□□ -0.68
VPS11-208ENST00000621676 ARHGAP42A6NI28 874 aa10.82□□□□□ -0.68
VPS11-208ENST00000621676 CA4P22748 312 aa10.82□□□□□ -0.68
VPS11-208ENST00000621676 GABRR2P28476 465 aa10.82□□□□□ -0.68
VPS11-208ENST00000621676 SGSHP51688 502 aa10.82□□□□□ -0.68
VPS11-208ENST00000621676 WDR5P61964 334 aaKnown RBP10.82□□□□□ -0.68
VPS11-208ENST00000621676 DMTNQ08495 405 aa10.82□□□□□ -0.68
VPS11-208ENST00000621676 SLMAPQ14BN4 828 aa10.82□□□□□ -0.68
VPS11-208ENST00000621676 CLUL1Q15846 466 aa10.82□□□□□ -0.68
VPS11-208ENST00000621676 FBXO48Q5FWF7 155 aa10.82□□□□□ -0.68
VPS11-208ENST00000621676 FAM171BQ6P995 826 aa10.82□□□□□ -0.68
VPS11-208ENST00000621676 CPLX4Q7Z7G2 160 aa10.82□□□□□ -0.68
VPS11-208ENST00000621676 CARNMT1Q8N4J0 409 aa10.82□□□□□ -0.68
VPS11-208ENST00000621676 TTC39CQ8N584 583 aa10.82□□□□□ -0.68
VPS11-208ENST00000621676 PPM1EQ8WY54 764 aa10.82□□□□□ -0.68
VPS11-208ENST00000621676 CAVIN3Q969G5 261 aa10.82□□□□□ -0.68
VPS11-208ENST00000621676 SERPINB12Q96P63 405 aa10.82□□□□□ -0.68
VPS11-208ENST00000621676 EPAS1Q99814 870 aa10.82□□□□□ -0.68
VPS11-208ENST00000621676 TSEN34Q9BSV6 310 aaKnown RBP10.82□□□□□ -0.68
VPS11-208ENST00000621676 CHRAC1Q9NRG0 131 aa10.82□□□□□ -0.68
VPS11-208ENST00000621676 MARCOQ9UEW3 520 aaPredicted RBP10.82□□□□□ -0.68
VPS11-208ENST00000621676 ANKRD12Q6UB98 2062 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 TMEM120BA0PK00 339 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 TUBBP07437 444 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 CNPP09543 421 aaKnown RBP10.81□□□□□ -0.68
VPS11-208ENST00000621676 SKIP12755 728 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 PBX2P40425 430 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 ARL4CP56559 192 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 MPP2Q14168 576 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 RNASEH2BQ5TBB1 312 aaKnown RBP10.81□□□□□ -0.68
VPS11-208ENST00000621676 C16orf46Q6P387 395 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 LRRC43Q8N309 656 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 FNIP1Q8TF40 1166 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 PRCCQ92733 491 aaPredicted RBP10.81□□□□□ -0.68
VPS11-208ENST00000621676 TTC17Q96AE7 1141 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 ZNF558Q96NG5 402 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 TCF25Q9BQ70 676 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 ZNF395Q9H8N7 513 aaPredicted RBP10.81□□□□□ -0.68
VPS11-208ENST00000621676 FBXW11Q9UKB1 542 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 PCDHB8Q9UN66 801 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 H0YGN5 161 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 M0QZQ0 153 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 CES2O00748 559 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 KRT4P19013 534 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 SCNN1BP51168 640 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 GPX6P59796 221 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 TUBB4BP68371 445 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 AUHQ13825 339 aaKnown RBP10.81□□□□□ -0.68
VPS11-208ENST00000621676 NFE2Q16621 373 aaPredicted RBP10.81□□□□□ -0.68
VPS11-208ENST00000621676 ACCSLQ4AC99 568 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 PIK3R6Q5UE93 754 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 FBXL22Q6P050 247 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms