RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 STAU2Q9NUL3 570 aaKnown RBP eCLIP20.35■□□□□ 0.85
UPF3A-211ENST00000618700 WNT16Q9UBV4 365 aa20.35■□□□□ 0.85
UPF3A-211ENST00000618700 PIAS3Q9Y6X2 628 aa20.35■□□□□ 0.85
UPF3A-211ENST00000618700 MUC3AQ02505 3323 aa20.35■□□□□ 0.85
UPF3A-211ENST00000618700 KIAA1549LQ6ZVL6 1849 aa20.34■□□□□ 0.85
UPF3A-211ENST00000618700 SHISA7A6NL88 538 aa20.34■□□□□ 0.85
UPF3A-211ENST00000618700 DRGXA6NNA5 263 aa20.34■□□□□ 0.85
UPF3A-211ENST00000618700 ZSCAN12O43309 604 aa20.34■□□□□ 0.85
UPF3A-211ENST00000618700 SPOPO43791 374 aa20.34■□□□□ 0.85
UPF3A-211ENST00000618700 PALMO75781 387 aa20.34■□□□□ 0.85
UPF3A-211ENST00000618700 LRIG2O94898 1065 aa20.34■□□□□ 0.85
UPF3A-211ENST00000618700 CTHP32929 405 aa20.34■□□□□ 0.85
UPF3A-211ENST00000618700 IRAK1P51617 712 aa20.34■□□□□ 0.85
UPF3A-211ENST00000618700 ZXDAP98168 799 aa20.34■□□□□ 0.85
UPF3A-211ENST00000618700 MLF2Q15773 248 aaPredicted RBP20.34■□□□□ 0.85
UPF3A-211ENST00000618700 ANO4Q32M45 955 aa20.34■□□□□ 0.85
UPF3A-211ENST00000618700 SLC44A4Q53GD3 710 aa20.34■□□□□ 0.85
UPF3A-211ENST00000618700 C12orf40Q86WS4 652 aa20.34■□□□□ 0.85
UPF3A-211ENST00000618700 RALGPS2Q86X27 583 aaPredicted RBP20.34■□□□□ 0.85
UPF3A-211ENST00000618700 DDI1Q8WTU0 396 aa20.34■□□□□ 0.85
UPF3A-211ENST00000618700 BHMTQ93088 406 aa20.34■□□□□ 0.85
UPF3A-211ENST00000618700 RPRD1AQ96P16 312 aaPredicted RBP20.34■□□□□ 0.85
UPF3A-211ENST00000618700 DHX35Q9H5Z1 703 aaKnown RBP20.34■□□□□ 0.85
UPF3A-211ENST00000618700 PPARGC1AQ9UBK2 798 aaKnown RBP20.34■□□□□ 0.85
UPF3A-211ENST00000618700 TYW5A2RUC4 315 aaKnown RBP20.33■□□□□ 0.85
UPF3A-211ENST00000618700 SPECC1L-ADORA2AF8WAN1 911 aa20.33■□□□□ 0.85
UPF3A-211ENST00000618700 PSTPIP1O43586 416 aa20.33■□□□□ 0.85
UPF3A-211ENST00000618700 TBL1XO60907 577 aa20.33■□□□□ 0.85
UPF3A-211ENST00000618700 KRT7P08729 469 aa20.33■□□□□ 0.85
UPF3A-211ENST00000618700 HTR7P34969 479 aa20.33■□□□□ 0.85
UPF3A-211ENST00000618700 OPRD1P41143 372 aa20.33■□□□□ 0.85
UPF3A-211ENST00000618700 EIF2DP41214 584 aaKnown RBP20.33■□□□□ 0.85
UPF3A-211ENST00000618700 ARSEP51690 589 aa20.33■□□□□ 0.85
UPF3A-211ENST00000618700 ATP13A4Q4VNC1 1196 aa20.33■□□□□ 0.85
UPF3A-211ENST00000618700 LRRC31Q6UY01 552 aa20.33■□□□□ 0.85
UPF3A-211ENST00000618700 CIR1Q86X95 450 aaPredicted RBP20.33■□□□□ 0.85
UPF3A-211ENST00000618700 CFAP52Q8N1V2 620 aa20.33■□□□□ 0.85
UPF3A-211ENST00000618700 FAM71BQ8TC56 605 aa20.33■□□□□ 0.85
UPF3A-211ENST00000618700 KIAA1524Q8TCG1 905 aa20.33■□□□□ 0.85
UPF3A-211ENST00000618700 HSPH1Q92598 858 aa20.33■□□□□ 0.85
UPF3A-211ENST00000618700 TBC1D31Q96DN5 1066 aa20.33■□□□□ 0.85
UPF3A-211ENST00000618700 ARHGEF3Q9NR81 526 aa20.33■□□□□ 0.85
UPF3A-211ENST00000618700 PLK2Q9NYY3 685 aa20.33■□□□□ 0.85
UPF3A-211ENST00000618700 FBXO10Q9UK96 956 aa20.33■□□□□ 0.85
UPF3A-211ENST00000618700 A0A1B0GVM2 712 aa20.32■□□□□ 0.84
UPF3A-211ENST00000618700 TCAF2A6NFQ2 919 aa20.32■□□□□ 0.84
UPF3A-211ENST00000618700 DCXO43602 365 aa20.32■□□□□ 0.84
UPF3A-211ENST00000618700 GJC1P36383 396 aa20.32■□□□□ 0.84
UPF3A-211ENST00000618700 ZNF135P52742 658 aaPredicted RBP20.32■□□□□ 0.84
UPF3A-211ENST00000618700 ALFQ53S48 1182 aa20.32■□□□□ 0.84
UPF3A-211ENST00000618700 NAIF1Q69YI7 327 aaPredicted RBP20.32■□□□□ 0.84
UPF3A-211ENST00000618700 TXNDC11Q6PKC3 985 aa20.32■□□□□ 0.84
UPF3A-211ENST00000618700 TPRG1Q6ZUI0 275 aa20.32■□□□□ 0.84
UPF3A-211ENST00000618700 CHST9Q7L1S5 443 aa20.32■□□□□ 0.84
UPF3A-211ENST00000618700 NT5DC3Q86UY8 548 aa20.32■□□□□ 0.84
UPF3A-211ENST00000618700 RHOT1Q8IXI2 618 aa20.32■□□□□ 0.84
UPF3A-211ENST00000618700 SYCE1Q8N0S2 351 aa20.32■□□□□ 0.84
UPF3A-211ENST00000618700 PHTF2Q8N3S3 785 aa20.32■□□□□ 0.84
UPF3A-211ENST00000618700 EPAS1Q99814 870 aa20.32■□□□□ 0.84
UPF3A-211ENST00000618700 PCDH18Q9HCL0 1135 aa20.32■□□□□ 0.84
UPF3A-211ENST00000618700 ZNF212Q9UDV6 495 aa20.32■□□□□ 0.84
UPF3A-211ENST00000618700 CA14Q9ULX7 337 aa20.32■□□□□ 0.84
UPF3A-211ENST00000618700 CLEC4EQ9ULY5 219 aa20.32■□□□□ 0.84
UPF3A-211ENST00000618700 F5P12259 2224 aa20.32■□□□□ 0.84
UPF3A-211ENST00000618700 KRBA1A5PL33 1030 aa20.31■□□□□ 0.84
UPF3A-211ENST00000618700 USP27XA6NNY8 438 aa20.31■□□□□ 0.84
UPF3A-211ENST00000618700 SRGAP2O75044 1071 aa20.31■□□□□ 0.84
UPF3A-211ENST00000618700 TULP3O75386 442 aa20.31■□□□□ 0.84
UPF3A-211ENST00000618700 PRKCQQ04759 706 aa20.31■□□□□ 0.84
UPF3A-211ENST00000618700 HS1BP3Q53T59 392 aa20.31■□□□□ 0.84
UPF3A-211ENST00000618700 CCAR2Q8N163 923 aaKnown RBP20.31■□□□□ 0.84
UPF3A-211ENST00000618700 TSC1Q92574 1164 aa20.31■□□□□ 0.84
UPF3A-211ENST00000618700 EDAQ92838 391 aa20.31■□□□□ 0.84
UPF3A-211ENST00000618700 XPO6Q96QU8 1125 aaKnown RBP20.31■□□□□ 0.84
UPF3A-211ENST00000618700 SLC2A11Q9BYW1 496 aa20.31■□□□□ 0.84
UPF3A-211ENST00000618700 ZYG11BQ9C0D3 744 aa20.31■□□□□ 0.84
UPF3A-211ENST00000618700 KCND1Q9NSA2 647 aa20.31■□□□□ 0.84
UPF3A-211ENST00000618700 MPP6Q9NZW5 540 aa20.31■□□□□ 0.84
UPF3A-211ENST00000618700 STIM2Q9P246 746 aa20.31■□□□□ 0.84
UPF3A-211ENST00000618700 FBXL21Q9UKT6 434 aa20.31■□□□□ 0.84
UPF3A-211ENST00000618700 DOCK4Q8N1I0 1966 aa20.31■□□□□ 0.84
UPF3A-211ENST00000618700 PALM2-AKAP2B1ALY0 433 aaPredicted RBP20.3■□□□□ 0.84
UPF3A-211ENST00000618700 CREB3O43889 395 aa20.3■□□□□ 0.84
UPF3A-211ENST00000618700 CLDN11O75508 207 aa20.3■□□□□ 0.84
UPF3A-211ENST00000618700 CNTN5O94779 1100 aa20.3■□□□□ 0.84
UPF3A-211ENST00000618700 LUC7L3O95232 432 aaKnown RBP20.3■□□□□ 0.84
UPF3A-211ENST00000618700 FTCDO95954 541 aa20.3■□□□□ 0.84
UPF3A-211ENST00000618700 CISD3P0C7P0 127 aa20.3■□□□□ 0.84
UPF3A-211ENST00000618700 RHOQP17081 205 aa20.3■□□□□ 0.84
UPF3A-211ENST00000618700 CTNNA2P26232 953 aa20.3■□□□□ 0.84
UPF3A-211ENST00000618700 CTNNA1P35221 906 aaKnown RBP20.3■□□□□ 0.84
UPF3A-211ENST00000618700 MARCKSL1P49006 195 aa20.3■□□□□ 0.84
UPF3A-211ENST00000618700 CDH4P55283 916 aa20.3■□□□□ 0.84
UPF3A-211ENST00000618700 AMPD2Q01433 879 aa20.3■□□□□ 0.84
UPF3A-211ENST00000618700 PPP6R3Q5H9R7 873 aaPredicted RBP20.3■□□□□ 0.84
UPF3A-211ENST00000618700 C1orf228Q6PIY5 440 aa20.3■□□□□ 0.84
UPF3A-211ENST00000618700 NLRP14Q86W24 1093 aa20.3■□□□□ 0.84
UPF3A-211ENST00000618700 NAT16Q8N8M0 369 aa20.3■□□□□ 0.84
UPF3A-211ENST00000618700 WFDC5Q8TCV5 224 aa20.3■□□□□ 0.84
UPF3A-211ENST00000618700 KRT35Q92764 455 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms